Wall clock time and date at job start Tue Mar 31 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.46902 * 2 1 4 4 O 1.45702 * 110.52340 * 122.78492 * 2 1 3 5 5 C 1.33768 * 109.47853 * 118.63164 * 4 2 1 6 6 O 1.21515 * 123.06994 * 179.97438 * 5 4 2 7 7 N 1.34001 * 113.85667 * 359.97438 * 5 4 2 8 8 C 1.47093 * 108.88138 * 0.02562 * 7 5 4 9 9 H 1.09001 * 110.69031 * 241.36216 * 8 7 5 10 10 C 1.50706 * 110.56424 * 118.57245 * 8 7 5 11 11 O 1.20824 * 120.00104 * 345.63890 * 10 8 7 12 12 O 1.34230 * 119.99717 * 165.64446 * 10 8 7 13 13 C 1.45199 * 116.99614 * 179.97438 * 12 10 8 14 14 C 1.50703 * 109.46928 * 179.97438 * 13 12 10 15 15 O 1.21278 * 119.99985 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00271 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47398 * 89.99557 * 17 16 14 19 19 H 1.08003 * 120.00015 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00048 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00473 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99797 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47398 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47236 * 120.00416 * 22 20 18 25 25 H 1.48507 * 109.47103 * 240.00011 * 22 20 18 26 26 C 1.46505 * 119.99832 * 359.97438 * 16 14 13 27 27 C 1.52994 * 109.47022 * 90.00138 * 26 16 14 28 28 C 1.47206 * 109.47290 * 179.97438 * 27 26 16 29 29 N 9.40460 * 132.25362 * 292.36027 * 2 1 3 30 30 H 1.08996 * 109.46809 * 182.63297 * 1 2 3 31 31 H 1.09001 * 109.46802 * 302.62849 * 1 2 3 32 32 H 1.09003 * 109.47157 * 62.62612 * 1 2 3 33 33 H 0.97003 * 125.55800 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47177 * 299.99820 * 13 12 10 35 35 H 1.09001 * 109.47399 * 59.99991 * 13 12 10 36 36 H 1.09000 * 109.47082 * 209.99555 * 17 16 14 37 37 H 1.09004 * 109.46754 * 329.99821 * 17 16 14 38 38 H 0.96999 * 120.00725 * 179.97438 * 21 20 18 39 39 H 1.08997 * 109.47024 * 210.00620 * 26 16 14 40 40 H 1.09000 * 109.46875 * 330.00379 * 26 16 14 41 41 H 1.09005 * 109.47443 * 299.99879 * 27 26 16 42 42 H 1.09000 * 109.47099 * 60.00377 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 8 2.0408 -0.7389 1.1472 5 6 2.7631 -1.7810 0.7209 6 8 3.3057 -2.5644 1.4748 7 7 2.8337 -1.8819 -0.6134 8 6 2.0699 -0.7783 -1.2154 9 1 1.2480 -1.1631 -1.8192 10 6 2.9712 0.0973 -2.0473 11 8 4.1710 0.0043 -1.9396 12 8 2.4410 0.9806 -2.9077 13 6 3.3691 1.7913 -3.6757 14 6 2.5976 2.7165 -4.5811 15 8 1.3851 2.6945 -4.5797 16 7 3.2552 3.5677 -5.3933 17 6 2.5053 4.4675 -6.2731 18 6 2.2329 5.7628 -5.5527 19 1 2.5838 5.9021 -4.5408 20 6 1.5359 6.7702 -6.1853 21 7 1.1081 6.6005 -7.4173 22 14 1.1990 8.3761 -5.2926 23 1 1.7807 8.3151 -3.9277 24 1 1.8150 9.4989 -6.0441 25 1 -0.2673 8.5906 -5.1960 26 6 4.7200 3.5939 -5.3954 27 6 5.2463 2.6007 -6.4334 28 6 6.7181 2.6274 -6.4360 29 7 7.8538 2.6482 -6.4377 30 1 -0.3633 -1.0266 0.0472 31 1 -0.3633 0.5541 0.8655 32 1 -0.3633 0.4725 -0.9126 33 1 3.3106 -2.5705 -1.1026 34 1 3.9867 2.3787 -2.9962 35 1 4.0063 1.1429 -4.2771 36 1 3.0892 4.6673 -7.1715 37 1 1.5602 4.0003 -6.5502 38 1 0.6174 7.3091 -7.8623 39 1 5.0651 4.5972 -5.6448 40 1 5.0897 3.3175 -4.4080 41 1 4.9012 1.5973 -6.1839 42 1 4.8766 2.8771 -7.4208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786075687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:45 Heat of formation + Delta-G solvation = -178.364548 kcal Electronic energy + Delta-G solvation = -29175.075505 eV Core-core repulsion = 24734.598158 eV Total energy + Delta-G solvation = -4440.477347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.16842 -41.61999 -40.54770 -38.64147 -38.08192 -37.69360 -36.69261 -35.96816 -34.86100 -33.18011 -32.21372 -30.91846 -29.01922 -27.87719 -25.35452 -24.72867 -24.14221 -23.54572 -22.45243 -20.34184 -19.56700 -19.10335 -18.91404 -18.41660 -18.29664 -18.02229 -17.74246 -17.50395 -17.15264 -16.61433 -16.17762 -16.03210 -15.88232 -15.72680 -15.63799 -14.91367 -14.70461 -14.51680 -14.41533 -14.12122 -13.89264 -13.72058 -13.58914 -13.55644 -13.16863 -13.00210 -12.94978 -12.80580 -12.70434 -12.52463 -12.18481 -12.14779 -12.07753 -12.05616 -11.84463 -11.76727 -11.62331 -10.79411 -10.63306 -10.56431 -9.54730 -8.16286 -6.27639 0.74933 0.84264 1.42455 1.45645 1.47143 1.52478 1.55428 1.61289 1.80248 1.83985 2.20507 2.38549 2.46896 2.78337 3.02256 3.16984 3.30277 3.52757 3.55865 3.78746 3.92066 4.00264 4.05325 4.10796 4.15041 4.20812 4.54039 4.81994 4.82278 4.86290 5.00500 5.03605 5.15467 5.27541 5.36216 5.56428 5.58816 5.85532 5.96043 6.13659 6.35563 6.59194 6.64737 6.81408 6.82263 7.28254 7.45189 8.90708 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.002959 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.304980 B = 9461.385863 C =11473.083384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.079 3.921 3 H 0.128 0.872 4 O -0.331 6.331 5 C 0.652 3.348 6 O -0.561 6.561 7 N -0.698 5.698 8 C 0.116 3.884 9 H 0.185 0.815 10 C 0.458 3.542 11 O -0.510 6.510 12 O -0.329 6.329 13 C 0.051 3.949 14 C 0.507 3.493 15 O -0.562 6.562 16 N -0.590 5.590 17 C 0.260 3.740 18 C -0.540 4.540 19 H 0.056 0.944 20 C 0.014 3.986 21 N -0.924 5.924 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.285 1.285 26 C 0.107 3.893 27 C -0.039 4.039 28 C 0.244 3.756 29 N -0.491 5.491 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.450 0.550 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.040 0.960 37 H 0.011 0.989 38 H 0.265 0.735 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 -14.143 7.954 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.145 0.855 4 O -0.241 6.241 5 C 0.405 3.595 6 O -0.448 6.448 7 N -0.372 5.372 8 C 0.008 3.992 9 H 0.202 0.798 10 C 0.298 3.702 11 O -0.398 6.398 12 O -0.243 6.243 13 C -0.025 4.025 14 C 0.294 3.706 15 O -0.440 6.440 16 N -0.322 5.322 17 C 0.140 3.860 18 C -0.579 4.579 19 H 0.074 0.926 20 C -0.186 4.186 21 N -0.564 5.564 22 Si 0.780 3.220 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.211 1.211 26 C -0.017 4.017 27 C -0.080 4.080 28 C -0.073 4.073 29 N -0.169 5.169 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.296 0.704 34 H 0.136 0.864 35 H 0.150 0.850 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.154 0.846 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.835 -14.221 8.524 16.681 hybrid contribution -0.156 0.955 -0.321 1.019 sum 1.679 -13.266 8.203 15.687 Atomic orbital electron populations 1.22214 0.88021 1.05250 1.06037 1.24134 0.99105 0.96175 0.78248 0.85462 1.87358 1.63733 1.38710 1.34305 1.18509 0.77715 0.80508 0.82794 1.91066 1.50643 1.44068 1.59011 1.45690 1.56289 1.29980 1.05203 1.22225 0.94097 0.87081 0.95798 0.79783 1.24004 0.88503 0.79148 0.78496 1.90751 1.17063 1.66747 1.65213 1.86538 1.40508 1.47397 1.49884 1.23043 0.90673 0.93836 0.94961 1.20381 0.87837 0.81223 0.81126 1.90723 1.15731 1.69826 1.67752 1.47982 1.06846 1.36921 1.40423 1.18900 0.91501 0.86791 0.88848 1.21780 1.35545 1.00090 1.00440 0.92590 1.25659 0.95378 1.01929 0.95587 1.70009 1.38628 1.34755 1.13036 0.85559 0.77717 0.79730 0.78953 1.19162 1.20324 1.21101 1.21625 0.78780 1.01156 1.00182 1.19870 0.79909 1.03990 1.04259 1.29186 0.95017 0.91523 0.91604 1.81266 1.14624 1.10516 1.10452 0.89890 0.89573 0.87267 0.70439 0.86376 0.85009 0.94191 0.97045 0.92590 0.89063 0.87738 0.84551 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.45 71.98 0.68 -0.50 16 2 C 0.08 0.96 4.14 30.96 0.13 1.08 16 3 H 0.13 1.47 7.72 -2.39 -0.02 1.45 16 4 O -0.33 -6.56 10.80 -47.28 -0.51 -7.07 16 5 C 0.65 14.49 9.16 129.91 1.19 15.68 16 6 O -0.56 -17.28 18.04 19.64 0.35 -16.92 16 7 N -0.70 -10.03 5.63 -573.42 -3.23 -13.26 16 8 C 0.12 1.29 3.93 44.50 0.17 1.46 16 9 H 0.19 0.71 7.73 -2.39 -0.02 0.69 16 10 C 0.46 7.63 7.08 71.24 0.50 8.13 16 11 O -0.51 -11.03 16.31 21.97 0.36 -10.67 16 12 O -0.33 -6.55 9.76 -45.07 -0.44 -6.99 16 13 C 0.05 1.03 4.50 71.24 0.32 1.35 16 14 C 0.51 15.63 7.75 87.66 0.68 16.31 16 15 O -0.56 -23.25 16.08 15.78 0.25 -23.00 16 16 N -0.59 -18.25 2.46 -826.17 -2.03 -20.28 16 17 C 0.26 11.31 5.16 85.63 0.44 11.75 16 18 C -0.54 -26.93 9.39 25.60 0.24 -26.69 16 19 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 20 C 0.01 0.72 5.46 84.65 0.46 1.18 16 21 N -0.92 -50.69 13.29 21.45 0.28 -50.41 16 22 Si 0.95 41.27 29.54 68.60 2.03 43.30 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 26 C 0.11 2.20 5.17 86.38 0.45 2.64 16 27 C -0.04 -0.58 6.03 28.79 0.17 -0.41 16 28 C 0.24 4.86 15.43 89.45 1.38 6.24 16 29 N -0.49 -13.10 18.54 20.01 0.37 -12.73 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.45 4.95 8.96 -92.71 -0.83 4.12 16 34 H 0.12 2.00 7.39 -2.39 -0.02 1.98 16 35 H 0.13 1.77 7.17 -2.39 -0.02 1.75 16 36 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 37 H 0.01 0.59 7.42 -2.39 -0.02 0.57 16 38 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 39 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 40 H 0.10 1.57 6.44 -2.39 -0.02 1.56 16 41 H 0.14 1.26 7.22 -2.38 -0.02 1.24 16 42 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -80.91 379.29 4.52 -76.39 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.26 Total: 3.41 kcal Atomic # 6 Polarization: 31.41 SS G_CDS: 6.82 Total: 38.23 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.60 Total: -96.67 kcal Atomic # 8 Polarization: -64.67 SS G_CDS: 0.02 Total: -64.65 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -80.91 4.52 -76.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786075687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.974 kcal (2) G-P(sol) polarization free energy of solvation -80.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds