Wall clock time and date at job start Tue Mar 31 2020 23:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.57724 * 2 1 4 4 O 1.45697 * 110.52516 * 122.70697 * 2 1 3 5 5 C 1.33773 * 109.47806 * 118.63271 * 4 2 1 6 6 O 1.21514 * 123.07751 * 179.97438 * 5 4 2 7 7 N 1.34002 * 113.85678 * 359.97438 * 5 4 2 8 8 C 1.47096 * 108.88168 * 0.02562 * 7 5 4 9 9 H 1.09002 * 110.56650 * 118.56988 * 8 7 5 10 10 C 1.50695 * 110.69037 * 241.36551 * 8 7 5 11 11 O 1.20828 * 120.00099 * 16.46489 * 10 8 7 12 12 O 1.34229 * 119.99873 * 196.46937 * 10 8 7 13 13 C 1.45206 * 116.99889 * 179.97438 * 12 10 8 14 14 C 1.50695 * 109.47055 * 179.97438 * 13 12 10 15 15 O 1.21286 * 120.00361 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00113 * 179.97438 * 14 13 12 17 17 C 1.46504 * 120.00340 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46902 * 89.99872 * 17 16 14 19 19 H 1.07995 * 119.99968 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99828 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99666 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99966 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46917 * 60.00538 * 22 20 18 24 24 H 1.48499 * 109.47054 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47395 * 300.00489 * 22 20 18 26 26 C 1.46500 * 119.99885 * 0.02562 * 16 14 13 27 27 C 1.53002 * 109.47083 * 89.99644 * 26 16 14 28 28 C 1.47203 * 109.47099 * 179.97438 * 27 26 16 29 29 N 8.95129 * 42.57773 * 226.28566 * 2 1 3 30 30 H 1.09001 * 109.46846 * 182.70458 * 1 2 3 31 31 H 1.08997 * 109.46822 * 302.70078 * 1 2 3 32 32 H 1.08995 * 109.47270 * 62.70587 * 1 2 3 33 33 H 0.97002 * 125.56508 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47233 * 299.99976 * 13 12 10 35 35 H 1.09000 * 109.46842 * 60.00362 * 13 12 10 36 36 H 1.08990 * 109.47418 * 210.00573 * 17 16 14 37 37 H 1.09001 * 109.46669 * 330.00244 * 17 16 14 38 38 H 0.97009 * 119.99480 * 179.97438 * 21 20 18 39 39 H 1.08996 * 109.47152 * 209.99274 * 26 16 14 40 40 H 1.08995 * 109.46832 * 329.99768 * 26 16 14 41 41 H 1.08996 * 109.47218 * 300.00500 * 27 26 16 42 42 H 1.09009 * 109.46846 * 59.99917 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0204 0.0000 4 8 2.0408 -0.7373 1.1481 5 6 2.7632 -1.7799 0.7232 6 8 3.3059 -2.5624 1.4780 7 7 2.8337 -1.8827 -0.6110 8 6 2.0698 -0.7799 -1.2144 9 1 2.7217 -0.1473 -1.8169 10 6 0.9336 -1.3131 -2.0484 11 8 0.5718 -2.4582 -1.9151 12 8 0.3236 -0.5159 -2.9395 13 6 -0.7626 -1.0968 -3.7085 14 6 -1.3220 -0.0609 -4.6493 15 8 -0.8513 1.0567 -4.6701 16 7 -2.3447 -0.3767 -5.4684 17 6 -2.8881 0.6301 -6.3834 18 6 -2.1491 0.5676 -7.6953 19 1 -1.3545 -0.1504 -7.8337 20 6 -2.4876 1.4273 -8.7188 21 7 -3.4550 2.3021 -8.5499 22 14 -1.5720 1.3494 -10.3452 23 1 -1.7364 -0.0006 -10.9416 24 1 -2.1220 2.3709 -11.2722 25 1 -0.1296 1.6164 -10.1145 26 6 -2.9128 -1.7268 -5.4438 27 6 -4.0500 -1.7830 -4.4217 28 6 -4.6214 -3.1394 -4.3974 29 7 -5.0614 -4.1853 -4.3775 30 1 -0.3633 -1.0265 0.0485 31 1 -0.3633 0.5552 0.8648 32 1 -0.3633 0.4712 -0.9132 33 1 3.3112 -2.5715 -1.0994 34 1 -0.3887 -1.9449 -4.2821 35 1 -1.5475 -1.4337 -3.0314 36 1 -3.9467 0.4334 -6.5529 37 1 -2.7683 1.6211 -5.9458 38 1 -3.6928 2.9072 -9.2699 39 1 -3.2997 -1.9763 -6.4317 40 1 -2.1386 -2.4418 -5.1655 41 1 -3.6633 -1.5334 -3.4337 42 1 -4.8243 -1.0679 -4.7000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786075688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:49 Heat of formation + Delta-G solvation = -150.776846 kcal Electronic energy + Delta-G solvation = -29444.913297 eV Core-core repulsion = 25005.632242 eV Total energy + Delta-G solvation = -4439.281055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.48489 -40.70621 -39.33635 -37.71317 -37.09548 -36.74701 -35.42095 -35.21926 -33.04858 -32.66275 -31.03020 -29.72314 -27.80895 -26.67939 -24.25988 -24.10621 -22.93321 -22.78705 -21.30450 -19.12513 -18.88116 -18.32130 -17.85669 -17.41426 -17.23976 -16.87040 -16.59513 -16.46602 -16.04840 -15.52955 -15.15169 -15.06117 -14.87280 -14.77828 -14.31802 -14.16733 -13.83515 -13.58304 -13.32437 -13.06267 -12.86502 -12.61585 -12.58031 -12.37073 -12.24610 -12.16160 -11.89654 -11.47799 -11.41938 -11.20474 -11.14187 -11.09598 -11.03198 -10.88492 -10.72889 -10.31160 -10.01145 -9.87544 -9.31212 -8.58101 -8.09623 -6.20424 -4.25925 1.53943 1.69022 2.19991 2.37474 2.62305 2.73232 2.93461 2.98743 3.22941 3.28409 3.29994 3.36211 3.40274 3.89194 4.10302 4.13149 4.30604 4.33359 4.60394 4.62099 4.67961 4.76427 4.84556 4.98342 5.01170 5.15411 5.17713 5.20641 5.29886 5.60405 5.65357 5.87008 5.91088 6.22952 6.69522 6.72494 7.13672 7.17037 7.25090 7.48481 7.60910 7.74433 7.96067 8.02564 8.56055 8.78643 9.40165 10.87674 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.002847 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.889433 B = 9834.169378 C =11244.565733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.140 0.860 4 O -0.318 6.318 5 C 0.653 3.347 6 O -0.514 6.514 7 N -0.713 5.713 8 C 0.107 3.893 9 H 0.146 0.854 10 C 0.456 3.544 11 O -0.489 6.489 12 O -0.321 6.321 13 C 0.044 3.956 14 C 0.509 3.491 15 O -0.508 6.508 16 N -0.590 5.590 17 C 0.247 3.753 18 C -0.535 4.535 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.111 3.889 27 C -0.051 4.051 28 C 0.214 3.786 29 N -0.440 5.440 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.442 0.558 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.039 0.961 37 H 0.049 0.951 38 H 0.266 0.734 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.649 -3.393 13.219 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.031 3.969 3 H 0.158 0.842 4 O -0.229 6.229 5 C 0.405 3.595 6 O -0.398 6.398 7 N -0.386 5.386 8 C -0.002 4.002 9 H 0.163 0.837 10 C 0.296 3.704 11 O -0.375 6.375 12 O -0.236 6.236 13 C -0.033 4.033 14 C 0.293 3.707 15 O -0.382 6.382 16 N -0.323 5.323 17 C 0.129 3.871 18 C -0.573 4.573 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.015 4.015 27 C -0.092 4.092 28 C -0.104 4.104 29 N -0.117 5.117 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.286 0.714 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.135 -4.725 13.883 15.897 hybrid contribution 0.639 -0.162 -1.542 1.677 sum 6.775 -4.887 12.342 14.903 Atomic orbital electron populations 1.22436 0.91288 1.04582 1.05786 1.23868 0.97236 0.96560 0.79278 0.84203 1.87375 1.63682 1.39123 1.32672 1.18389 0.78149 0.80672 0.82251 1.91108 1.48931 1.42083 1.57636 1.45763 1.54551 1.32088 1.06235 1.21996 0.92404 0.89948 0.95825 0.83659 1.23454 0.83200 0.84832 0.78931 1.90749 1.62669 1.18743 1.65331 1.86557 1.45980 1.42984 1.48039 1.23106 0.88753 0.96955 0.94481 1.19660 0.81262 0.88321 0.81410 1.90754 1.57919 1.21763 1.67801 1.48175 1.32903 1.12587 1.38635 1.19435 0.93981 0.86828 0.86884 1.21346 1.19088 1.19432 0.97459 0.92328 1.24907 0.95086 0.94890 0.98934 1.69903 1.29026 1.20624 1.33473 0.86558 0.80194 0.77796 0.82900 1.20204 1.21135 1.20115 1.21419 0.94569 0.85221 1.00287 1.19877 1.00210 0.86204 1.02908 1.28976 0.93484 0.94751 0.93176 1.81181 1.09421 1.12394 1.08694 0.91077 0.89194 0.88130 0.71395 0.88165 0.88410 0.94259 0.93268 0.92462 0.88080 0.90662 0.87716 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 8.47 37.16 0.31 -0.92 16 2 C 0.09 0.56 4.50 -26.16 -0.12 0.44 16 3 H 0.14 0.46 8.14 -51.93 -0.42 0.03 16 4 O -0.32 -3.17 10.80 -37.84 -0.41 -3.58 16 5 C 0.65 7.42 9.16 53.71 0.49 7.91 16 6 O -0.51 -7.82 18.04 -19.12 -0.34 -8.17 16 7 N -0.71 -5.82 5.65 -59.35 -0.34 -6.15 16 8 C 0.11 0.73 4.28 -68.19 -0.29 0.43 16 9 H 0.15 0.55 8.14 -51.93 -0.42 0.13 16 10 C 0.46 4.38 5.12 36.00 0.18 4.56 16 11 O -0.49 -5.85 16.20 -18.75 -0.30 -6.15 16 12 O -0.32 -3.57 8.75 -45.90 -0.40 -3.97 16 13 C 0.04 0.50 4.50 36.00 0.16 0.66 16 14 C 0.51 8.15 7.75 -10.99 -0.09 8.07 16 15 O -0.51 -10.48 16.08 -14.11 -0.23 -10.71 16 16 N -0.59 -9.46 2.46 -175.06 -0.43 -9.89 16 17 C 0.25 5.31 5.16 -5.19 -0.03 5.29 16 18 C -0.53 -13.31 9.39 -34.44 -0.32 -13.63 16 19 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 22 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.11 1.27 5.17 -4.04 -0.02 1.25 16 27 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 28 C 0.21 2.39 15.43 -20.79 -0.32 2.07 16 29 N -0.44 -6.20 18.53 42.11 0.78 -5.42 16 30 H 0.07 0.59 7.46 -51.93 -0.39 0.20 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.69 6.80 -51.93 -0.35 0.33 16 33 H 0.44 2.95 8.96 -40.82 -0.37 2.58 16 34 H 0.10 1.03 7.39 -51.93 -0.38 0.64 16 35 H 0.10 0.86 7.18 -51.93 -0.37 0.49 16 36 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 40 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 41 H 0.10 0.71 7.22 -51.93 -0.38 0.33 16 42 H 0.12 1.04 8.14 -51.92 -0.42 0.61 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -35.93 374.78 -5.65 -41.58 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.03 Total: -2.03 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -0.31 Total: 17.10 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.75 Total: -44.87 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.69 Total: -32.58 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.93 -5.65 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786075688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.195 kcal (2) G-P(sol) polarization free energy of solvation -35.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds