Wall clock time and date at job start Tue Mar 31 2020 23:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.57953 * 2 1 4 4 O 1.45702 * 110.52069 * 237.29498 * 2 1 3 5 5 C 1.33770 * 109.47787 * 241.37143 * 4 2 1 6 6 O 1.21520 * 123.07021 * 180.02562 * 5 4 2 7 7 N 1.33995 * 113.85722 * 0.02562 * 5 4 2 8 8 C 1.47094 * 108.88496 * 0.02562 * 7 5 4 9 9 H 1.08999 * 110.56792 * 241.28405 * 8 7 5 10 10 C 1.50698 * 110.56776 * 118.57049 * 8 7 5 11 11 O 1.20822 * 119.99804 * 341.45975 * 10 8 7 12 12 O 1.34231 * 120.00053 * 161.45960 * 10 8 7 13 13 C 1.45198 * 116.99983 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47036 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 16 14 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00061 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00225 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46861 * 89.99972 * 22 20 18 24 24 H 1.48498 * 109.47453 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00240 * 22 20 18 26 26 C 1.46490 * 120.00111 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47305 * 89.99580 * 26 16 14 28 28 C 1.47208 * 109.47132 * 179.97438 * 27 26 16 29 29 N 9.39593 * 59.76740 * 128.61367 * 2 1 3 30 30 H 1.08994 * 109.47516 * 297.29163 * 1 2 3 31 31 H 1.09000 * 109.46864 * 57.29353 * 1 2 3 32 32 H 1.09002 * 109.47505 * 177.29202 * 1 2 3 33 33 H 0.97007 * 125.56169 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47379 * 59.99613 * 13 12 10 35 35 H 1.09001 * 109.46782 * 299.99696 * 13 12 10 36 36 H 1.09000 * 109.47018 * 209.99971 * 17 16 14 37 37 H 1.09000 * 109.47828 * 330.00266 * 17 16 14 38 38 H 0.96997 * 120.00410 * 179.97438 * 21 20 18 39 39 H 1.09006 * 109.47028 * 209.99878 * 26 16 14 40 40 H 1.09002 * 109.47109 * 329.99455 * 26 16 14 41 41 H 1.09001 * 109.47263 * 299.99631 * 27 26 16 42 42 H 1.08996 * 109.47107 * 60.00334 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0204 0.0000 4 8 2.0407 -0.7373 -1.1482 5 6 2.7630 -1.7800 -0.7234 6 8 3.3056 -2.5625 -1.4784 7 7 2.8335 -1.8829 0.6107 8 6 2.0688 -0.7808 1.2143 9 1 2.7196 -0.1493 1.8190 10 6 0.9329 -1.3180 2.0463 11 8 0.5489 -2.4520 1.8839 12 8 0.3478 -0.5366 2.9676 13 6 -0.7396 -1.1204 3.7325 14 6 -1.2683 -0.1033 4.7108 15 8 -0.7773 1.0047 4.7582 16 7 -2.2874 -0.4246 5.5321 17 6 -2.8017 0.5644 6.4827 18 6 -3.9069 1.3574 5.8339 19 1 -4.1968 1.1460 4.8152 20 6 -4.5478 2.3526 6.5407 21 7 -5.5126 3.0443 5.9748 22 14 -4.0469 2.7176 8.3029 23 1 -2.9752 3.7456 8.3100 24 1 -5.2221 3.2225 9.0573 25 1 -3.5449 1.4749 8.9424 26 6 -2.8808 -1.7627 5.4743 27 6 -2.1445 -2.6895 6.4438 28 6 -2.7412 -4.0340 6.3861 29 7 -3.2010 -5.0662 6.3432 30 1 -0.3634 0.4712 0.9132 31 1 -0.3633 0.5553 -0.8647 32 1 -0.3634 -1.0265 -0.0486 33 1 3.3110 -2.5718 1.0990 34 1 -0.3745 -1.9916 4.2764 35 1 -1.5383 -1.4233 3.0554 36 1 -3.1901 0.0537 7.3638 37 1 -1.9968 1.2374 6.7781 38 1 -5.9638 3.7442 6.4721 39 1 -3.9328 -1.7060 5.7541 40 1 -2.7950 -2.1548 4.4609 41 1 -1.0925 -2.7462 6.1640 42 1 -2.2303 -2.2975 7.4572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786075689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:52 Heat of formation + Delta-G solvation = -145.358941 kcal Electronic energy + Delta-G solvation = -29475.376679 eV Core-core repulsion = 25036.330562 eV Total energy + Delta-G solvation = -4439.046117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.48525 -40.73496 -39.44686 -37.71043 -37.20101 -36.80704 -35.54747 -35.22388 -32.98079 -32.63755 -31.22306 -29.91115 -28.03452 -26.97500 -24.31513 -24.08183 -22.86568 -22.55151 -21.29501 -19.13119 -18.89427 -18.33583 -17.96679 -17.46079 -17.22047 -17.00611 -16.87677 -16.53605 -16.14912 -15.55437 -15.18834 -15.12611 -14.85922 -14.83318 -14.37440 -13.99783 -13.86901 -13.68063 -13.43223 -13.00390 -12.90311 -12.67957 -12.64162 -12.52632 -12.40867 -12.14582 -12.01972 -11.75403 -11.47945 -11.28765 -11.18990 -11.13431 -11.02747 -10.92103 -10.68899 -10.34677 -10.02122 -9.73696 -9.42431 -8.73789 -8.17196 -6.23074 -4.24273 1.52099 1.66131 2.20310 2.37196 2.57718 2.69600 2.85543 2.97638 3.17634 3.22315 3.25151 3.32846 3.37538 3.84406 4.07600 4.12237 4.25565 4.33172 4.52492 4.60854 4.67340 4.73055 4.78442 4.91197 4.94399 5.09743 5.22578 5.22895 5.25701 5.55293 5.67295 5.82355 5.86326 6.22020 6.38824 6.67671 6.72783 6.92262 7.16725 7.40663 7.42816 7.60958 7.76139 8.26180 8.49966 8.79294 9.35234 10.89891 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.002937 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.185970 B = 9532.256992 C =11146.461594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.141 0.859 4 O -0.318 6.318 5 C 0.653 3.347 6 O -0.514 6.514 7 N -0.713 5.713 8 C 0.108 3.892 9 H 0.146 0.854 10 C 0.456 3.544 11 O -0.488 6.488 12 O -0.322 6.322 13 C 0.045 3.955 14 C 0.512 3.488 15 O -0.507 6.507 16 N -0.585 5.585 17 C 0.216 3.784 18 C -0.537 4.537 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.893 5.893 22 Si 0.875 3.125 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.265 1.265 26 C 0.111 3.889 27 C -0.052 4.052 28 C 0.214 3.786 29 N -0.436 5.436 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.441 0.559 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.266 0.734 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.305 -6.675 -4.534 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.031 3.969 3 H 0.158 0.842 4 O -0.228 6.228 5 C 0.406 3.594 6 O -0.398 6.398 7 N -0.387 5.387 8 C -0.001 4.001 9 H 0.163 0.837 10 C 0.296 3.704 11 O -0.374 6.374 12 O -0.236 6.236 13 C -0.032 4.032 14 C 0.297 3.703 15 O -0.381 6.381 16 N -0.318 5.318 17 C 0.097 3.903 18 C -0.575 4.575 19 H 0.094 0.906 20 C -0.128 4.128 21 N -0.530 5.530 22 Si 0.702 3.298 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.190 1.190 26 C -0.015 4.015 27 C -0.093 4.093 28 C -0.104 4.104 29 N -0.113 5.113 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.285 0.715 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.735 -7.991 -5.298 16.751 hybrid contribution 0.257 0.181 1.441 1.475 sum 13.993 -7.810 -3.857 16.482 Atomic orbital electron populations 1.22440 0.91146 1.04683 1.05913 1.23881 0.97313 0.96510 0.79201 0.84166 1.87381 1.63640 1.39086 1.32671 1.18393 0.78127 0.80683 0.82237 1.91109 1.48953 1.42092 1.57608 1.45762 1.54557 1.32112 1.06264 1.21999 0.92316 0.89939 0.95843 0.83708 1.23470 0.83271 0.84643 0.79016 1.90750 1.61629 1.19215 1.65808 1.86552 1.46427 1.43963 1.46648 1.23061 0.88982 0.96534 0.94611 1.19669 0.80935 0.88054 0.81689 1.90752 1.57867 1.21683 1.67797 1.47811 1.32824 1.12885 1.38316 1.19808 0.95423 0.87444 0.87635 1.21262 1.16802 1.17764 1.01696 0.90552 1.24846 0.94525 0.95286 0.98152 1.69877 1.23427 1.22305 1.37421 0.86881 0.78590 0.79453 0.84914 1.19804 1.21034 1.18953 1.21450 0.99507 0.81931 0.98631 1.19870 1.00346 0.84260 1.04822 1.28749 0.93703 0.94624 0.93372 1.81016 1.09027 1.12738 1.08540 0.88160 0.89094 0.91000 0.71462 0.88313 0.87953 0.94540 0.93982 0.92356 0.87825 0.90276 0.87641 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 8.47 37.16 0.31 -1.12 16 2 C 0.09 0.59 4.51 -26.16 -0.12 0.48 16 3 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 4 O -0.32 -3.27 10.80 -37.83 -0.41 -3.68 16 5 C 0.65 7.46 9.16 53.71 0.49 7.96 16 6 O -0.51 -7.84 18.04 -19.12 -0.35 -8.19 16 7 N -0.71 -5.68 5.65 -59.36 -0.34 -6.01 16 8 C 0.11 0.72 4.28 -68.19 -0.29 0.43 16 9 H 0.15 0.49 8.14 -51.93 -0.42 0.07 16 10 C 0.46 4.30 5.09 36.00 0.18 4.49 16 11 O -0.49 -5.76 16.12 -18.75 -0.30 -6.06 16 12 O -0.32 -3.50 8.90 -45.91 -0.41 -3.90 16 13 C 0.05 0.50 4.50 36.01 0.16 0.66 16 14 C 0.51 7.95 7.75 -10.98 -0.09 7.86 16 15 O -0.51 -10.14 16.08 -14.11 -0.23 -10.36 16 16 N -0.59 -9.03 2.46 -175.06 -0.43 -9.46 16 17 C 0.22 4.31 4.23 -5.19 -0.02 4.28 16 18 C -0.54 -13.51 9.94 -34.44 -0.34 -13.85 16 19 H 0.08 2.13 8.06 -52.49 -0.42 1.70 16 20 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 22 Si 0.87 19.37 27.47 -169.99 -4.67 14.70 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 26 C 0.11 1.22 5.17 -4.05 -0.02 1.19 16 27 C -0.05 -0.42 6.03 -29.51 -0.18 -0.60 16 28 C 0.21 2.27 15.42 -20.93 -0.32 1.95 16 29 N -0.44 -5.95 18.50 41.96 0.78 -5.17 16 30 H 0.10 0.82 6.91 -51.93 -0.36 0.46 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.67 7.39 -51.93 -0.38 0.29 16 33 H 0.44 2.76 8.96 -40.82 -0.37 2.40 16 34 H 0.10 0.83 7.18 -51.93 -0.37 0.45 16 35 H 0.10 1.02 7.39 -51.93 -0.38 0.64 16 36 H 0.04 0.67 7.13 -51.93 -0.37 0.30 16 37 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.08 0.72 6.44 -51.93 -0.33 0.38 16 41 H 0.11 0.64 7.22 -51.93 -0.38 0.26 16 42 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -37.10 371.22 -5.31 -42.41 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.00 Total: -0.74 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: -0.33 Total: 15.62 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.78 Total: -45.39 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.69 Total: -32.19 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.10 -5.31 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786075689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.951 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds