Wall clock time and date at job start Tue Mar 31 2020 23:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.57953 * 2 1 4 4 O 1.45702 * 110.52069 * 237.29498 * 2 1 3 5 5 C 1.33770 * 109.47787 * 241.37143 * 4 2 1 6 6 O 1.21520 * 123.07021 * 180.02562 * 5 4 2 7 7 N 1.33995 * 113.85722 * 0.02562 * 5 4 2 8 8 C 1.47094 * 108.88496 * 0.02562 * 7 5 4 9 9 H 1.08999 * 110.56792 * 241.28405 * 8 7 5 10 10 C 1.50698 * 110.56776 * 118.57049 * 8 7 5 11 11 O 1.20822 * 119.99804 * 341.45975 * 10 8 7 12 12 O 1.34231 * 120.00053 * 161.45960 * 10 8 7 13 13 C 1.45198 * 116.99983 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47036 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47162 * 90.00410 * 17 16 14 19 19 H 1.07998 * 119.99576 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00057 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00061 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00225 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46861 * 89.99972 * 22 20 18 24 24 H 1.48498 * 109.47453 * 210.00313 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00240 * 22 20 18 26 26 C 1.46490 * 120.00111 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47305 * 89.99580 * 26 16 14 28 28 C 1.47208 * 109.47132 * 179.97438 * 27 26 16 29 29 N 9.39593 * 59.76740 * 128.61367 * 2 1 3 30 30 H 1.08994 * 109.47516 * 297.29163 * 1 2 3 31 31 H 1.09000 * 109.46864 * 57.29353 * 1 2 3 32 32 H 1.09002 * 109.47505 * 177.29202 * 1 2 3 33 33 H 0.97007 * 125.56169 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47379 * 59.99613 * 13 12 10 35 35 H 1.09001 * 109.46782 * 299.99696 * 13 12 10 36 36 H 1.09000 * 109.47018 * 209.99971 * 17 16 14 37 37 H 1.09000 * 109.47828 * 330.00266 * 17 16 14 38 38 H 0.96997 * 120.00410 * 179.97438 * 21 20 18 39 39 H 1.09006 * 109.47028 * 209.99878 * 26 16 14 40 40 H 1.09002 * 109.47109 * 329.99455 * 26 16 14 41 41 H 1.09001 * 109.47263 * 299.99631 * 27 26 16 42 42 H 1.08996 * 109.47107 * 60.00334 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0204 0.0000 4 8 2.0407 -0.7373 -1.1482 5 6 2.7630 -1.7800 -0.7234 6 8 3.3056 -2.5625 -1.4784 7 7 2.8335 -1.8829 0.6107 8 6 2.0688 -0.7808 1.2143 9 1 2.7196 -0.1493 1.8190 10 6 0.9329 -1.3180 2.0463 11 8 0.5489 -2.4520 1.8839 12 8 0.3478 -0.5366 2.9676 13 6 -0.7396 -1.1204 3.7325 14 6 -1.2683 -0.1033 4.7108 15 8 -0.7773 1.0047 4.7582 16 7 -2.2874 -0.4246 5.5321 17 6 -2.8017 0.5644 6.4827 18 6 -3.9069 1.3574 5.8339 19 1 -4.1968 1.1460 4.8152 20 6 -4.5478 2.3526 6.5407 21 7 -5.5126 3.0443 5.9748 22 14 -4.0469 2.7176 8.3029 23 1 -2.9752 3.7456 8.3100 24 1 -5.2221 3.2225 9.0573 25 1 -3.5449 1.4749 8.9424 26 6 -2.8808 -1.7627 5.4743 27 6 -2.1445 -2.6895 6.4438 28 6 -2.7412 -4.0340 6.3861 29 7 -3.2010 -5.0662 6.3432 30 1 -0.3634 0.4712 0.9132 31 1 -0.3633 0.5553 -0.8647 32 1 -0.3634 -1.0265 -0.0486 33 1 3.3110 -2.5718 1.0990 34 1 -0.3745 -1.9916 4.2764 35 1 -1.5383 -1.4233 3.0554 36 1 -3.1901 0.0537 7.3638 37 1 -1.9968 1.2374 6.7781 38 1 -5.9638 3.7442 6.4721 39 1 -3.9328 -1.7060 5.7541 40 1 -2.7950 -2.1548 4.4609 41 1 -1.0925 -2.7462 6.1640 42 1 -2.2303 -2.2975 7.4572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786075689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:52 Heat of formation + Delta-G solvation = -173.302189 kcal Electronic energy + Delta-G solvation = -29476.588389 eV Core-core repulsion = 25036.330562 eV Total energy + Delta-G solvation = -4440.257827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.21910 -41.61568 -40.59679 -38.62013 -38.14374 -37.68622 -36.75802 -35.94187 -34.80246 -33.33239 -32.40879 -31.03750 -29.17742 -27.94841 -25.29082 -24.93057 -24.06022 -23.58718 -22.08149 -20.29433 -19.59324 -19.24031 -19.10074 -18.54872 -18.28365 -17.98709 -17.81072 -17.50765 -17.21864 -16.60940 -16.15007 -16.04696 -15.85765 -15.77170 -15.46409 -15.00945 -14.81678 -14.68810 -14.41757 -14.20628 -13.85572 -13.82777 -13.72546 -13.60572 -13.29876 -13.22875 -13.02632 -12.75417 -12.69961 -12.37733 -12.24652 -12.10160 -12.07733 -11.94429 -11.79692 -11.75352 -11.65819 -10.80175 -10.73566 -10.65493 -9.53844 -8.24654 -6.29849 0.78794 0.87092 1.43203 1.46895 1.50538 1.51310 1.54510 1.59433 1.79797 1.87910 2.20785 2.39826 2.41376 2.79926 3.01836 3.12929 3.28700 3.53566 3.63919 3.69150 3.91906 3.98897 4.08355 4.10980 4.13385 4.16462 4.54455 4.60721 4.66317 4.80057 4.87143 4.97492 5.04615 5.08750 5.13419 5.52049 5.57499 5.57959 5.97935 6.28587 6.38795 6.54998 6.62825 6.74371 6.82992 7.22549 7.37202 8.91964 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.002937 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.185970 B = 9532.256992 C =11146.461594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.181 0.819 4 O -0.331 6.331 5 C 0.651 3.349 6 O -0.562 6.562 7 N -0.698 5.698 8 C 0.112 3.888 9 H 0.190 0.810 10 C 0.463 3.537 11 O -0.513 6.513 12 O -0.329 6.329 13 C 0.051 3.949 14 C 0.510 3.490 15 O -0.559 6.559 16 N -0.587 5.587 17 C 0.223 3.777 18 C -0.534 4.534 19 H 0.032 0.968 20 C 0.010 3.990 21 N -0.949 5.949 22 Si 0.942 3.058 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.224 1.224 26 C 0.105 3.895 27 C -0.040 4.040 28 C 0.244 3.756 29 N -0.492 5.492 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.449 0.551 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.139 0.861 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.302 -7.308 -2.816 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.030 3.970 3 H 0.198 0.802 4 O -0.241 6.241 5 C 0.405 3.595 6 O -0.450 6.450 7 N -0.372 5.372 8 C 0.004 3.996 9 H 0.207 0.793 10 C 0.304 3.696 11 O -0.400 6.400 12 O -0.244 6.244 13 C -0.026 4.026 14 C 0.297 3.703 15 O -0.437 6.437 16 N -0.319 5.319 17 C 0.101 3.899 18 C -0.573 4.573 19 H 0.050 0.950 20 C -0.188 4.188 21 N -0.590 5.590 22 Si 0.765 3.235 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.147 1.147 26 C -0.019 4.019 27 C -0.081 4.081 28 C -0.074 4.074 29 N -0.169 5.169 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.295 0.705 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.156 0.844 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 15.733 -8.679 -3.556 18.316 hybrid contribution -0.441 0.420 0.809 1.012 sum 15.291 -8.259 -2.747 17.595 Atomic orbital electron populations 1.22424 0.92135 1.03476 1.06139 1.24282 0.96629 0.98000 0.78125 0.80160 1.87359 1.63392 1.38985 1.34337 1.18508 0.77785 0.80422 0.82832 1.91066 1.51045 1.43874 1.58985 1.45695 1.53805 1.32523 1.05185 1.22341 0.91894 0.89563 0.95755 0.79300 1.23915 0.83194 0.84131 0.78400 1.90751 1.62437 1.20374 1.66460 1.86553 1.46354 1.44462 1.47011 1.23003 0.89777 0.95589 0.94216 1.20368 0.80217 0.88157 0.81570 1.90726 1.59588 1.24079 1.69262 1.47720 1.32842 1.13663 1.37656 1.19499 0.93252 0.88180 0.88952 1.21612 1.17716 1.17997 0.99971 0.94973 1.25833 0.94503 0.95267 1.03209 1.70055 1.25603 1.23684 1.39636 0.85810 0.77810 0.80677 0.79235 1.20206 1.21480 1.14660 1.21637 0.99038 0.80341 1.00889 1.19898 1.01321 0.81931 1.04904 1.29012 0.92235 0.94468 0.91667 1.81062 1.10820 1.14662 1.10400 0.88414 0.88343 0.92957 0.70497 0.84787 0.86845 0.91701 0.94970 0.92574 0.89053 0.88159 0.84374 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 8.47 71.98 0.61 -2.00 16 2 C 0.08 0.94 4.51 30.96 0.14 1.08 16 3 H 0.18 0.60 8.14 -2.39 -0.02 0.58 16 4 O -0.33 -6.38 10.80 -47.30 -0.51 -6.89 16 5 C 0.65 14.29 9.16 129.91 1.19 15.48 16 6 O -0.56 -17.30 18.04 19.62 0.35 -16.94 16 7 N -0.70 -9.66 5.65 -573.43 -3.24 -12.90 16 8 C 0.11 1.15 4.28 44.50 0.19 1.34 16 9 H 0.19 0.38 8.14 -2.39 -0.02 0.36 16 10 C 0.46 7.48 5.09 71.24 0.36 7.84 16 11 O -0.51 -10.92 16.12 21.98 0.35 -10.56 16 12 O -0.33 -6.26 8.90 -45.07 -0.40 -6.67 16 13 C 0.05 0.97 4.50 71.24 0.32 1.29 16 14 C 0.51 14.87 7.75 87.66 0.68 15.55 16 15 O -0.56 -21.90 16.08 15.77 0.25 -21.65 16 16 N -0.59 -16.86 2.46 -826.16 -2.03 -18.89 16 17 C 0.22 8.46 4.23 85.64 0.36 8.82 16 18 C -0.53 -27.21 9.94 25.60 0.25 -26.96 16 19 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 20 C 0.01 0.51 5.47 84.65 0.46 0.98 16 21 N -0.95 -56.15 13.96 21.45 0.30 -55.85 16 22 Si 0.94 39.28 27.47 68.60 1.88 41.17 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.22 -7.80 6.54 99.48 0.65 -7.15 16 26 C 0.11 2.02 5.17 86.38 0.45 2.46 16 27 C -0.04 -0.48 6.03 28.79 0.17 -0.31 16 28 C 0.24 4.46 15.42 89.50 1.38 5.84 16 29 N -0.49 -12.58 18.50 19.95 0.37 -12.21 16 30 H 0.10 1.46 6.91 -2.39 -0.02 1.44 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 0.94 7.39 -2.39 -0.02 0.93 16 33 H 0.45 4.71 8.96 -92.70 -0.83 3.87 16 34 H 0.13 1.63 7.18 -2.39 -0.02 1.61 16 35 H 0.11 1.96 7.39 -2.39 -0.02 1.94 16 36 H 0.07 2.13 7.13 -2.39 -0.02 2.11 16 37 H 0.03 1.32 6.85 -2.39 -0.02 1.30 16 38 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.09 2.02 8.07 -2.38 -0.02 2.00 16 40 H 0.10 1.51 6.44 -2.39 -0.02 1.49 16 41 H 0.14 0.90 7.22 -2.39 -0.02 0.88 16 42 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -86.73 371.22 4.11 -82.62 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.21 Total: 7.35 kcal Atomic # 6 Polarization: 24.85 SS G_CDS: 6.57 Total: 31.42 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -4.60 Total: -99.85 kcal Atomic # 8 Polarization: -62.75 SS G_CDS: 0.05 Total: -62.70 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.88 Total: 41.17 kcal Total: -86.73 4.11 -82.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786075689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.678 kcal (2) G-P(sol) polarization free energy of solvation -86.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds