Wall clock time and date at job start Tue Mar 31 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48502 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46892 * 299.99359 * 3 2 1 6 6 H 1.48501 * 109.47339 * 59.99685 * 3 2 1 7 7 C 1.37876 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99997 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99635 * 180.02562 * 10 9 7 12 12 O 1.21579 * 120.00114 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99908 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 H 1.09005 * 110.43546 * 327.54750 * 14 13 11 16 16 C 1.54626 * 110.48977 * 205.00104 * 14 13 11 17 17 C 1.54473 * 101.76699 * 216.52279 * 16 14 13 18 18 N 1.46765 * 105.47150 * 25.41754 * 17 16 14 19 19 C 1.40175 * 124.34930 * 162.98513 * 18 17 16 20 20 C 1.38987 * 120.07999 * 269.72770 * 19 18 17 21 21 F 1.35099 * 120.04682 * 359.97438 * 20 19 18 22 22 C 1.38352 * 119.90961 * 179.74309 * 20 19 18 23 23 C 1.38264 * 120.08363 * 0.50616 * 22 20 19 24 24 C 1.38264 * 120.17335 * 359.76760 * 23 22 20 25 25 C 1.38342 * 120.08715 * 359.97438 * 24 23 22 26 26 F 1.35102 * 120.04306 * 180.02562 * 25 24 23 27 27 C 1.34417 * 111.30319 * 342.98140 * 18 17 16 28 28 O 1.21291 * 124.94416 * 180.44395 * 27 18 17 29 29 H 0.96998 * 119.99718 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46877 * 59.99988 * 9 7 2 31 31 H 1.09002 * 109.46993 * 300.00334 * 9 7 2 32 32 H 0.96995 * 120.00292 * 0.27660 * 10 9 7 33 33 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 34 34 H 1.08994 * 110.96973 * 334.64507 * 16 14 13 35 35 H 1.09004 * 110.96675 * 98.40472 * 16 14 13 36 36 H 1.09003 * 110.24721 * 144.41851 * 17 16 14 37 37 H 1.09005 * 110.24956 * 266.41620 * 17 16 14 38 38 H 1.07994 * 119.95665 * 180.22569 * 22 20 19 39 39 H 1.07998 * 119.91382 * 179.74272 * 23 22 20 40 40 H 1.08002 * 119.95610 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5583 -5.1055 -0.0009 13 7 2.6294 -5.9078 -0.0005 14 6 2.1411 -7.2890 -0.0005 15 1 1.2018 -7.3606 0.5480 16 6 3.1986 -8.2370 0.6111 17 6 3.0293 -9.5015 -0.2598 18 7 2.4799 -9.0276 -1.5356 19 6 2.4866 -9.7705 -2.7243 20 6 3.5572 -9.6668 -3.6045 21 9 4.5934 -8.8492 -3.3160 22 6 3.5627 -10.4056 -4.7742 23 6 2.5002 -11.2383 -5.0730 24 6 1.4307 -11.3398 -4.2026 25 6 1.4203 -10.6083 -3.0284 26 9 0.3750 -10.7085 -2.1783 27 6 1.9693 -7.7898 -1.4177 28 8 1.4463 -7.1655 -2.3165 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 3.1566 -3.4355 0.0046 33 1 3.5831 -5.7306 -0.0001 34 1 4.2012 -7.8224 0.5062 35 1 2.9735 -8.4500 1.6561 36 1 3.9949 -9.9813 -0.4199 37 1 2.3361 -10.1963 0.2146 38 1 4.3959 -10.3284 -5.4569 39 1 2.5054 -11.8106 -5.9888 40 1 0.6023 -11.9909 -4.4397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:47 Heat of formation + Delta-G solvation = -110.418432 kcal Electronic energy + Delta-G solvation = -29014.425874 eV Core-core repulsion = 24465.807376 eV Total energy + Delta-G solvation = -4548.618498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.35080 -49.32038 -41.04606 -39.25185 -38.57412 -36.57822 -34.80241 -33.96343 -32.46088 -31.83672 -30.80192 -29.14436 -27.68505 -26.40380 -23.90872 -23.35015 -22.71687 -21.98511 -20.51867 -19.97898 -18.56403 -18.24662 -17.82892 -17.63371 -16.71380 -16.40514 -16.14729 -16.00784 -15.77798 -15.63169 -15.53937 -14.85361 -14.75762 -14.57651 -14.39339 -13.92956 -13.81423 -13.46742 -13.23880 -13.14351 -12.88099 -12.49387 -12.43209 -12.22413 -12.17123 -11.90894 -11.82070 -11.37141 -10.88378 -10.87794 -10.36068 -10.25549 -9.45563 -9.38197 -9.29638 -9.26658 -9.22100 -8.72476 -8.64372 -7.72035 -6.09919 -4.16180 0.39761 0.49946 2.30990 2.49182 2.82267 3.27868 3.31691 3.35723 3.37669 3.41152 3.89887 3.94871 4.13787 4.22702 4.34707 4.37285 4.38958 4.59743 4.62554 4.65141 4.90535 5.06652 5.18277 5.26124 5.26857 5.38842 5.39761 5.48185 5.51891 5.65713 5.69876 5.99154 6.44621 6.64792 6.76623 7.11584 7.56969 7.58736 7.64908 7.93132 8.04793 8.08733 8.81666 8.97496 9.37361 9.52937 11.00480 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.002425 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.103888 B =11544.570315 C =11761.190006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.726 5.726 11 C 0.697 3.303 12 O -0.589 6.589 13 N -0.739 5.739 14 C 0.146 3.854 15 H 0.130 0.870 16 C -0.135 4.135 17 C 0.110 3.890 18 N -0.586 5.586 19 C 0.077 3.923 20 C 0.138 3.862 21 F -0.122 7.122 22 C -0.161 4.161 23 C -0.056 4.056 24 C -0.160 4.160 25 C 0.138 3.862 26 F -0.121 7.121 27 C 0.507 3.493 28 O -0.484 6.484 29 H 0.265 0.735 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.386 0.614 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.287 -28.980 -4.820 31.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.378 5.378 11 C 0.396 3.604 12 O -0.467 6.467 13 N -0.396 5.396 14 C 0.035 3.965 15 H 0.148 0.852 16 C -0.173 4.173 17 C -0.012 4.012 18 N -0.321 5.321 19 C -0.016 4.016 20 C 0.117 3.883 21 F -0.100 7.100 22 C -0.180 4.180 23 C -0.074 4.074 24 C -0.180 4.180 25 C 0.117 3.883 26 F -0.099 7.099 27 C 0.293 3.707 28 O -0.353 6.353 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.218 0.782 33 H 0.230 0.770 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.656 -28.574 -5.288 30.621 hybrid contribution 1.292 1.147 0.097 1.731 sum 10.948 -27.426 -5.191 29.984 Atomic orbital electron populations 1.69996 1.06080 1.27100 1.49096 1.24952 0.94915 0.99395 0.94847 0.86356 0.79782 0.83016 0.77693 1.19686 1.20831 1.20836 1.21262 0.93281 0.90411 1.52879 0.91905 1.19006 0.87770 0.80962 0.97700 1.45673 1.10804 1.04212 1.77126 1.16098 0.85142 0.81030 0.78102 1.90887 1.14052 1.83920 1.57822 1.44901 1.09048 1.03389 1.82311 1.21170 1.00647 0.82152 0.92549 0.85212 1.22938 0.99982 0.93845 1.00584 1.22189 0.99710 0.97134 0.82146 1.45542 1.62063 1.16632 1.07820 1.17344 0.95010 0.99083 0.90144 1.17727 0.84913 0.91411 0.94270 1.91548 1.55221 1.69876 1.93354 1.21201 1.01651 0.98771 0.96391 1.20938 0.91341 0.96248 0.98882 1.21205 1.01379 1.02088 0.93315 1.17744 0.84346 0.96863 0.89344 1.91557 1.54596 1.94523 1.69260 1.21881 0.76855 0.79998 0.91996 1.90789 1.40469 1.59046 1.45022 0.92545 0.95647 0.95667 0.78174 0.76993 0.88941 0.87663 0.89826 0.90130 0.83421 0.83401 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.54 -15.17 9.28 -34.44 -0.32 -15.49 16 8 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.27 7.46 5.43 -5.19 -0.03 7.43 16 10 N -0.73 -16.42 5.55 -66.41 -0.37 -16.79 16 11 C 0.70 15.33 8.57 -86.91 -0.74 14.59 16 12 O -0.59 -15.69 15.99 5.30 0.08 -15.61 16 13 N -0.74 -11.68 5.13 -58.69 -0.30 -11.98 16 14 C 0.15 2.01 3.28 -67.94 -0.22 1.79 16 15 H 0.13 1.95 7.55 -51.93 -0.39 1.56 16 16 C -0.14 -1.03 6.87 -25.10 -0.17 -1.20 16 17 C 0.11 0.85 7.28 -3.12 -0.02 0.82 16 18 N -0.59 -7.25 2.62 -112.12 -0.29 -7.54 16 19 C 0.08 0.91 5.40 -83.49 -0.45 0.46 16 20 C 0.14 1.46 7.31 -39.26 -0.29 1.17 16 21 F -0.12 -1.44 17.08 2.25 0.04 -1.40 16 22 C -0.16 -1.17 10.02 -39.53 -0.40 -1.56 16 23 C -0.06 -0.32 10.04 -39.56 -0.40 -0.72 16 24 C -0.16 -1.18 10.02 -39.53 -0.40 -1.57 16 25 C 0.14 1.48 7.31 -39.27 -0.29 1.19 16 26 F -0.12 -1.48 17.08 2.25 0.04 -1.44 16 27 C 0.51 8.35 7.63 -10.86 -0.08 8.27 16 28 O -0.48 -10.65 17.70 5.55 0.10 -10.55 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.39 7.41 8.34 -40.82 -0.34 7.07 16 33 H 0.40 4.87 8.44 -40.82 -0.34 4.53 16 34 H 0.09 0.58 7.82 -51.93 -0.41 0.18 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -39.92 362.12 -7.83 -47.76 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.40 Total: 5.00 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: -3.90 Total: 16.87 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.23 Total: -62.47 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: 0.18 Total: -26.16 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.08 Total: -2.84 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.92 -7.83 -47.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.660 kcal (2) G-P(sol) polarization free energy of solvation -39.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds