Wall clock time and date at job start Tue Mar 31 2020 22:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48498 * 109.46966 * 30.00026 * 3 2 1 6 6 H 1.48494 * 109.47213 * 150.00501 * 3 2 1 7 7 C 1.37876 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99986 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99656 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99876 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 10 15 15 H 1.09000 * 110.43878 * 36.36293 * 14 13 11 16 16 C 1.54629 * 110.49011 * 159.05211 * 14 13 11 17 17 C 1.54476 * 101.76859 * 143.47407 * 16 14 13 18 18 N 1.46760 * 105.47393 * 334.58287 * 17 16 14 19 19 C 1.40170 * 124.34810 * 196.99211 * 18 17 16 20 20 C 1.38985 * 120.08259 * 89.73236 * 19 18 17 21 21 F 1.35098 * 120.04288 * 359.96766 * 20 19 18 22 22 C 1.38344 * 119.90762 * 179.74308 * 20 19 18 23 23 C 1.38259 * 120.09012 * 0.52904 * 22 20 19 24 24 C 1.38272 * 120.16916 * 359.72137 * 23 22 20 25 25 C 1.38332 * 120.08886 * 0.02562 * 24 23 22 26 26 F 1.35097 * 120.04828 * 179.97438 * 25 24 23 27 27 C 1.34416 * 111.29935 * 17.02166 * 18 17 16 28 28 O 1.21298 * 124.93966 * 179.62958 * 27 18 17 29 29 H 0.97006 * 120.00538 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46948 * 60.00523 * 9 7 2 31 31 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 32 32 H 0.97000 * 119.99601 * 359.97438 * 10 9 7 33 33 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 34 34 H 1.09005 * 110.96589 * 261.60027 * 16 14 13 35 35 H 1.09009 * 110.96663 * 25.35011 * 16 14 13 36 36 H 1.09005 * 110.24236 * 215.58024 * 17 16 14 37 37 H 1.08994 * 110.31780 * 93.62607 * 17 16 14 38 38 H 1.08002 * 119.95155 * 180.22801 * 22 20 19 39 39 H 1.08003 * 119.91612 * 179.74426 * 23 22 20 40 40 H 1.08004 * 119.95664 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1150 -1.8974 -0.0021 13 7 5.7741 -4.0922 -0.0029 14 6 7.2144 -4.3599 -0.0092 15 1 7.7417 -3.6201 0.5930 16 6 7.5018 -5.7881 0.5091 17 6 8.6888 -6.2141 -0.3831 18 7 8.5635 -5.4165 -1.6086 19 6 9.2136 -5.7124 -2.8147 20 6 8.6011 -6.5351 -3.7527 21 9 7.3780 -7.0516 -3.5031 22 6 9.2437 -6.8204 -4.9441 23 6 10.4981 -6.2973 -5.1977 24 6 11.1129 -5.4826 -4.2648 25 6 10.4747 -5.1884 -3.0733 26 9 11.0763 -4.3928 -2.1621 27 6 7.7458 -4.3655 -1.4257 28 8 7.4730 -3.5418 -2.2733 29 1 -0.4851 0.8400 0.0004 30 1 3.8751 -0.6804 0.8889 31 1 3.8745 -0.6800 -0.8911 32 1 3.3695 -3.3125 -0.0021 33 1 5.1438 -4.8295 -0.0035 34 1 7.7902 -5.7709 1.5602 35 1 6.6424 -6.4402 0.3526 36 1 8.6229 -7.2769 -0.6162 37 1 9.6336 -5.9956 0.1144 38 1 8.7668 -7.4566 -5.6750 39 1 10.9990 -6.5252 -6.1270 40 1 12.0927 -5.0755 -4.4666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:50 Heat of formation + Delta-G solvation = -106.470969 kcal Electronic energy + Delta-G solvation = -29117.222481 eV Core-core repulsion = 24568.775157 eV Total energy + Delta-G solvation = -4548.447323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.37619 -49.34943 -41.10048 -39.33199 -38.65560 -36.62315 -34.90249 -34.06961 -32.48557 -31.93402 -30.82703 -29.22230 -28.07544 -26.69417 -23.94352 -23.37527 -22.47625 -21.91902 -20.57167 -20.03841 -18.59822 -18.37255 -17.86937 -17.67087 -16.79155 -16.47123 -16.28070 -16.07202 -16.02325 -15.65950 -15.56868 -14.85778 -14.78536 -14.66423 -14.30264 -13.96734 -13.95082 -13.60300 -13.24179 -13.17252 -12.92464 -12.56552 -12.45531 -12.37036 -12.25188 -12.18702 -12.13440 -11.44035 -10.92104 -10.72348 -10.40696 -9.90721 -9.58361 -9.45762 -9.39832 -9.31185 -9.24648 -8.80182 -8.69819 -7.97962 -6.15400 -4.16836 0.37147 0.47496 2.25741 2.45212 2.79867 3.24204 3.34092 3.35100 3.40556 3.49731 3.78382 3.92369 4.08244 4.20074 4.29739 4.32089 4.40277 4.53861 4.59795 4.60534 4.86777 4.95766 5.12888 5.20546 5.20865 5.35121 5.37492 5.42447 5.49136 5.62805 5.63483 5.96045 6.40402 6.58064 6.69992 6.78794 7.19269 7.28124 7.45124 7.56325 8.00438 8.32804 8.72647 8.85958 9.24574 9.46360 10.96573 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.002576 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.575242 B =10867.701616 C =10953.736077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.720 5.720 11 C 0.698 3.302 12 O -0.590 6.590 13 N -0.737 5.737 14 C 0.146 3.854 15 H 0.128 0.872 16 C -0.135 4.135 17 C 0.110 3.890 18 N -0.586 5.586 19 C 0.077 3.923 20 C 0.138 3.862 21 F -0.121 7.121 22 C -0.160 4.160 23 C -0.056 4.056 24 C -0.160 4.160 25 C 0.138 3.862 26 F -0.122 7.122 27 C 0.507 3.493 28 O -0.483 6.483 29 H 0.267 0.733 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.392 0.608 33 H 0.398 0.602 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.218 -21.603 -5.300 32.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.372 5.372 11 C 0.398 3.602 12 O -0.468 6.468 13 N -0.395 5.395 14 C 0.035 3.965 15 H 0.146 0.854 16 C -0.173 4.173 17 C -0.012 4.012 18 N -0.320 5.320 19 C -0.016 4.016 20 C 0.117 3.883 21 F -0.100 7.100 22 C -0.180 4.180 23 C -0.074 4.074 24 C -0.180 4.180 25 C 0.117 3.883 26 F -0.100 7.100 27 C 0.292 3.708 28 O -0.352 6.352 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.225 0.775 33 H 0.232 0.768 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 24.542 -20.054 -5.729 32.207 hybrid contribution -0.355 0.188 0.070 0.407 sum 24.188 -19.867 -5.658 31.808 Atomic orbital electron populations 1.69881 1.06197 1.27368 1.49733 1.24772 0.94785 0.99156 0.93907 0.86813 0.80593 0.83164 0.79125 1.19835 1.20968 1.18400 1.21091 0.88546 0.95183 1.53041 0.90294 1.19376 0.94789 0.77525 0.96725 1.45345 1.03473 1.11102 1.77270 1.16058 0.83724 0.82425 0.77994 1.90884 1.55228 1.42830 1.57852 1.44871 1.05077 1.07438 1.82142 1.21179 0.83697 0.98454 0.93120 0.85428 1.22930 0.98699 0.94769 1.00883 1.22187 0.99412 0.96107 0.83499 1.45529 1.47962 1.29317 1.09204 1.17338 0.92631 1.02419 0.89207 1.17725 0.81439 0.95084 0.94069 1.91551 1.39818 1.84290 1.94306 1.21208 0.96635 1.03900 0.96219 1.20944 0.93486 0.94051 0.98913 1.21204 1.02287 1.01856 0.92632 1.17738 0.90573 0.91845 0.88180 1.91552 1.82368 1.70673 1.65381 1.21848 0.77802 0.79657 0.91450 1.90794 1.57404 1.38545 1.48455 0.92318 0.95838 0.96286 0.77479 0.76754 0.87604 0.88831 0.89769 0.90116 0.83386 0.83383 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 4 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.54 -15.36 9.83 -34.44 -0.34 -15.70 16 8 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 9 C 0.24 6.23 4.50 -5.19 -0.02 6.20 16 10 N -0.72 -15.68 5.55 -66.41 -0.37 -16.05 16 11 C 0.70 14.71 8.50 -86.92 -0.74 13.97 16 12 O -0.59 -14.94 16.05 5.29 0.08 -14.86 16 13 N -0.74 -11.15 5.16 -58.69 -0.30 -11.46 16 14 C 0.15 1.92 3.22 -67.94 -0.22 1.70 16 15 H 0.13 1.80 7.67 -51.93 -0.40 1.40 16 16 C -0.13 -0.95 6.86 -25.10 -0.17 -1.12 16 17 C 0.11 0.80 7.28 -3.13 -0.02 0.78 16 18 N -0.59 -7.03 2.62 -112.13 -0.29 -7.32 16 19 C 0.08 0.89 5.40 -83.49 -0.45 0.43 16 20 C 0.14 1.43 7.31 -39.27 -0.29 1.15 16 21 F -0.12 -1.42 17.08 2.25 0.04 -1.38 16 22 C -0.16 -1.14 10.02 -39.53 -0.40 -1.54 16 23 C -0.06 -0.31 10.04 -39.56 -0.40 -0.71 16 24 C -0.16 -1.14 10.02 -39.53 -0.40 -1.54 16 25 C 0.14 1.44 7.31 -39.27 -0.29 1.15 16 26 F -0.12 -1.44 17.08 2.25 0.04 -1.40 16 27 C 0.51 8.11 7.62 -10.86 -0.08 8.03 16 28 O -0.48 -10.40 17.65 5.54 0.10 -10.30 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 32 H 0.39 7.42 8.34 -40.82 -0.34 7.08 16 33 H 0.40 4.65 8.40 -40.82 -0.34 4.31 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.55 7.80 -51.92 -0.41 0.14 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.15 0.32 8.06 -52.48 -0.42 -0.10 16 40 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -39.92 358.48 -7.48 -47.39 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.37 Total: 3.80 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: -3.91 Total: 14.96 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.19 Total: -61.24 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.18 Total: -25.16 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.92 -7.48 -47.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.076 kcal (2) G-P(sol) polarization free energy of solvation -39.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds