Wall clock time and date at job start Tue Mar 31 2020 22:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48498 * 109.46966 * 30.00026 * 3 2 1 6 6 H 1.48494 * 109.47213 * 150.00501 * 3 2 1 7 7 C 1.37876 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99986 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99656 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99876 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 10 15 15 H 1.09000 * 110.43878 * 36.36293 * 14 13 11 16 16 C 1.54629 * 110.49011 * 159.05211 * 14 13 11 17 17 C 1.54476 * 101.76859 * 143.47407 * 16 14 13 18 18 N 1.46760 * 105.47393 * 334.58287 * 17 16 14 19 19 C 1.40170 * 124.34810 * 196.99211 * 18 17 16 20 20 C 1.38985 * 120.08259 * 89.73236 * 19 18 17 21 21 F 1.35098 * 120.04288 * 359.96766 * 20 19 18 22 22 C 1.38344 * 119.90762 * 179.74308 * 20 19 18 23 23 C 1.38259 * 120.09012 * 0.52904 * 22 20 19 24 24 C 1.38272 * 120.16916 * 359.72137 * 23 22 20 25 25 C 1.38332 * 120.08886 * 0.02562 * 24 23 22 26 26 F 1.35097 * 120.04828 * 179.97438 * 25 24 23 27 27 C 1.34416 * 111.29935 * 17.02166 * 18 17 16 28 28 O 1.21298 * 124.93966 * 179.62958 * 27 18 17 29 29 H 0.97006 * 120.00538 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46948 * 60.00523 * 9 7 2 31 31 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 32 32 H 0.97000 * 119.99601 * 359.97438 * 10 9 7 33 33 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 34 34 H 1.09005 * 110.96589 * 261.60027 * 16 14 13 35 35 H 1.09009 * 110.96663 * 25.35011 * 16 14 13 36 36 H 1.09005 * 110.24236 * 215.58024 * 17 16 14 37 37 H 1.08994 * 110.31780 * 93.62607 * 17 16 14 38 38 H 1.08002 * 119.95155 * 180.22801 * 22 20 19 39 39 H 1.08003 * 119.91612 * 179.74426 * 23 22 20 40 40 H 1.08004 * 119.95664 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1150 -1.8974 -0.0021 13 7 5.7741 -4.0922 -0.0029 14 6 7.2144 -4.3599 -0.0092 15 1 7.7417 -3.6201 0.5930 16 6 7.5018 -5.7881 0.5091 17 6 8.6888 -6.2141 -0.3831 18 7 8.5635 -5.4165 -1.6086 19 6 9.2136 -5.7124 -2.8147 20 6 8.6011 -6.5351 -3.7527 21 9 7.3780 -7.0516 -3.5031 22 6 9.2437 -6.8204 -4.9441 23 6 10.4981 -6.2973 -5.1977 24 6 11.1129 -5.4826 -4.2648 25 6 10.4747 -5.1884 -3.0733 26 9 11.0763 -4.3928 -2.1621 27 6 7.7458 -4.3655 -1.4257 28 8 7.4730 -3.5418 -2.2733 29 1 -0.4851 0.8400 0.0004 30 1 3.8751 -0.6804 0.8889 31 1 3.8745 -0.6800 -0.8911 32 1 3.3695 -3.3125 -0.0021 33 1 5.1438 -4.8295 -0.0035 34 1 7.7902 -5.7709 1.5602 35 1 6.6424 -6.4402 0.3526 36 1 8.6229 -7.2769 -0.6162 37 1 9.6336 -5.9956 0.1144 38 1 8.7668 -7.4566 -5.6750 39 1 10.9990 -6.5252 -6.1270 40 1 12.0927 -5.0755 -4.4666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787350821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:49 Heat of formation + Delta-G solvation = -137.261391 kcal Electronic energy + Delta-G solvation = -29118.557654 eV Core-core repulsion = 24568.775157 eV Total energy + Delta-G solvation = -4549.782496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.17483 -50.14188 -42.15594 -40.70646 -39.58718 -37.77478 -36.37746 -35.78746 -34.45687 -33.07455 -31.44778 -30.28003 -29.61806 -27.95333 -24.75742 -24.16617 -24.04137 -22.96124 -22.17438 -21.13851 -20.08451 -19.34870 -18.68532 -18.65470 -18.35659 -17.73188 -17.60633 -17.04042 -16.78082 -16.55816 -16.47303 -16.28843 -16.20647 -15.93965 -15.51070 -15.15544 -15.04742 -15.00332 -14.76455 -14.44293 -14.15637 -13.91436 -13.69530 -13.28896 -13.10952 -13.07516 -12.92804 -12.81411 -12.74169 -12.19125 -11.94061 -11.72053 -11.67411 -11.37188 -10.93458 -10.43038 -10.21696 -10.04703 -9.90126 -9.71527 -8.41481 -6.47919 -0.28345 -0.16385 1.08364 1.31533 1.33346 1.47140 1.52204 1.90217 2.16358 2.21222 2.27488 2.66298 2.93874 3.24597 3.28057 3.30451 3.45481 3.69946 3.71996 3.81333 3.95492 4.09732 4.26173 4.36232 4.57835 4.64981 4.72554 4.86166 4.89872 4.94321 4.95124 5.02177 5.09091 5.21989 5.28115 5.34791 5.50714 5.67579 5.73025 5.90753 6.22099 6.53157 6.88686 7.10278 7.20874 7.60383 8.73205 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.002576 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.575242 B =10867.701616 C =10953.736077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.719 5.719 11 C 0.697 3.303 12 O -0.635 6.635 13 N -0.716 5.716 14 C 0.138 3.862 15 H 0.115 0.885 16 C -0.113 4.113 17 C 0.102 3.898 18 N -0.577 5.577 19 C 0.044 3.956 20 C 0.111 3.889 21 F -0.136 7.136 22 C -0.151 4.151 23 C -0.039 4.039 24 C -0.151 4.151 25 C 0.108 3.892 26 F -0.138 7.138 27 C 0.494 3.506 28 O -0.556 6.556 29 H 0.273 0.727 30 H 0.014 0.986 31 H 0.001 0.999 32 H 0.406 0.594 33 H 0.417 0.583 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.175 0.825 39 H 0.194 0.806 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.292 -23.800 -5.821 35.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.128 3.872 10 N -0.373 5.373 11 C 0.397 3.603 12 O -0.517 6.517 13 N -0.374 5.374 14 C 0.028 3.972 15 H 0.133 0.867 16 C -0.151 4.151 17 C -0.018 4.018 18 N -0.309 5.309 19 C -0.049 4.049 20 C 0.091 3.909 21 F -0.114 7.114 22 C -0.170 4.170 23 C -0.057 4.057 24 C -0.170 4.170 25 C 0.088 3.912 26 F -0.117 7.117 27 C 0.282 3.718 28 O -0.432 6.432 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.018 0.982 32 H 0.241 0.759 33 H 0.255 0.745 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.192 0.808 39 H 0.211 0.789 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 26.643 -22.389 -6.221 35.353 hybrid contribution -0.903 0.714 0.139 1.159 sum 25.740 -21.675 -6.082 34.196 Atomic orbital electron populations 1.69966 1.07512 1.28635 1.50660 1.25536 0.95554 1.02486 0.93570 0.85894 0.79331 0.79567 0.79322 1.19458 1.19236 1.18604 1.21243 0.89621 0.94722 1.52650 0.92018 1.18950 0.93248 0.79693 0.95319 1.45053 1.04393 1.10021 1.77799 1.16219 0.82851 0.83810 0.77463 1.90848 1.56179 1.44908 1.59720 1.44635 1.06695 1.05776 1.80245 1.21496 0.81754 1.02076 0.91921 0.86703 1.23041 0.99286 0.90302 1.02477 1.22588 1.00393 0.96954 0.81822 1.45598 1.46226 1.28304 1.10787 1.17694 0.93485 1.03930 0.89744 1.18048 0.81410 0.96195 0.95280 1.91505 1.40768 1.84602 1.94549 1.21630 0.96969 1.03280 0.95123 1.21487 0.92544 0.91905 0.99741 1.21621 1.03076 1.01073 0.91226 1.18105 0.90972 0.92768 0.89396 1.91503 1.82586 1.71371 1.66204 1.22352 0.78042 0.79664 0.91791 1.90738 1.60375 1.41409 1.50650 0.91750 0.96786 0.98157 0.75860 0.74532 0.84125 0.86849 0.87155 0.88302 0.80790 0.78901 0.80839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.96 21.45 0.30 -56.60 16 2 C 0.03 1.71 5.47 84.65 0.46 2.17 16 3 Si 0.94 46.34 27.47 68.60 1.88 48.22 16 4 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -12.98 6.54 99.48 0.65 -12.33 16 7 C -0.54 -31.49 9.83 25.60 0.25 -31.24 16 8 H 0.06 3.70 7.84 -2.91 -0.02 3.68 16 9 C 0.25 13.43 4.50 85.63 0.38 13.82 16 10 N -0.72 -31.86 5.55 -482.30 -2.68 -34.54 16 11 C 0.70 29.94 8.50 179.05 1.52 31.46 16 12 O -0.64 -33.30 16.05 -3.98 -0.06 -33.37 16 13 N -0.72 -21.49 5.16 -457.85 -2.36 -23.85 16 14 C 0.14 3.57 3.22 44.99 0.15 3.71 16 15 H 0.12 3.30 7.67 -2.39 -0.02 3.28 16 16 C -0.11 -1.29 6.86 31.65 0.22 -1.07 16 17 C 0.10 1.28 7.28 86.83 0.63 1.91 16 18 N -0.58 -13.80 2.62 -627.24 -1.64 -15.44 16 19 C 0.04 1.01 5.40 38.17 0.21 1.21 16 20 C 0.11 2.23 7.31 22.47 0.16 2.40 16 21 F -0.14 -3.13 17.08 44.97 0.77 -2.37 16 22 C -0.15 -1.77 10.02 22.30 0.22 -1.54 16 23 C -0.04 -0.29 10.04 22.28 0.22 -0.07 16 24 C -0.15 -1.80 10.02 22.30 0.22 -1.57 16 25 C 0.11 2.22 7.31 22.47 0.16 2.39 16 26 F -0.14 -3.35 17.08 44.97 0.77 -2.58 16 27 C 0.49 16.36 7.62 87.90 0.67 17.03 16 28 O -0.56 -25.48 17.65 -3.08 -0.05 -25.53 16 29 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 30 H 0.01 0.78 7.20 -2.39 -0.02 0.77 16 31 H 0.00 0.03 7.57 -2.39 -0.02 0.01 16 32 H 0.41 15.46 8.34 -92.71 -0.77 14.69 16 33 H 0.42 9.23 8.40 -92.71 -0.78 8.45 16 34 H 0.14 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.11 0.90 7.80 -2.38 -0.02 0.89 16 36 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.19 -0.26 8.06 -2.91 -0.02 -0.28 16 40 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -93.06 358.48 1.93 -91.13 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -0.48 Total: 14.32 kcal Atomic # 6 Polarization: 35.11 SS G_CDS: 5.49 Total: 40.61 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -6.39 Total: -130.43 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -0.12 Total: -58.90 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 1.54 Total: -4.94 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.88 Total: 48.22 kcal Total: -93.06 1.93 -91.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.130 kcal (2) G-P(sol) polarization free energy of solvation -93.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds