Wall clock time and date at job start Tue Mar 31 2020 22:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00463 * 2 1 4 4 H 1.48496 * 109.46690 * 269.99809 * 3 2 1 5 5 H 1.48501 * 109.46902 * 29.99628 * 3 2 1 6 6 H 1.48493 * 109.47502 * 149.99706 * 3 2 1 7 7 C 1.37879 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99729 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00535 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47588 * 179.97438 * 9 7 2 11 11 C 1.34548 * 125.23955 * 124.71763 * 10 9 7 12 12 C 1.36806 * 108.04715 * 179.83775 * 11 10 9 13 13 C 1.47338 * 126.69264 * 180.13669 * 12 11 10 14 14 N 1.29805 * 119.99924 * 185.34965 * 13 12 11 15 15 N 1.40101 * 120.00085 * 179.97438 * 14 13 12 16 16 C 1.36785 * 127.14828 * 359.68381 * 15 14 13 17 17 N 1.30430 * 107.25808 * 179.83409 * 16 15 14 18 18 N 1.28523 * 110.05453 * 0.44437 * 17 16 15 19 19 C 1.31100 * 109.90879 * 359.72010 * 18 17 16 20 20 O 1.35571 * 126.46144 * 180.02562 * 19 18 17 21 21 C 1.46523 * 106.60724 * 0.41397 * 12 11 10 22 22 C 1.48226 * 126.50510 * 179.74453 * 21 12 11 23 23 C 1.39836 * 120.91064 * 223.85871 * 22 21 12 24 24 C 1.37944 * 119.01386 * 179.72880 * 23 22 21 25 25 N 1.31937 * 120.88626 * 0.56124 * 24 23 22 26 26 C 1.31933 * 122.02119 * 359.70924 * 25 24 23 27 27 C 1.37951 * 120.88676 * 0.02562 * 26 25 24 28 28 N 1.31523 * 106.98868 * 359.74442 * 21 12 11 29 29 H 0.97004 * 120.00127 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47185 * 59.99300 * 9 7 2 31 31 H 1.09004 * 109.46414 * 300.00066 * 9 7 2 32 32 H 1.07994 * 125.96955 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.00104 * 5.35172 * 13 12 11 34 34 H 1.08002 * 126.36874 * 0.02562 * 16 15 14 35 35 H 0.96701 * 113.99697 * 269.96787 * 20 19 18 36 36 H 1.08007 * 120.48866 * 0.02562 * 23 22 21 37 37 H 1.08003 * 119.55697 * 180.26994 * 24 23 22 38 38 H 1.08003 * 119.55801 * 180.02562 * 26 25 24 39 39 H 1.08003 * 120.49642 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 4.8489 -3.0993 -0.9004 12 6 5.0702 -4.4071 -0.5649 13 6 5.9367 -5.3637 -1.2754 14 7 5.9725 -6.6069 -0.9037 15 7 6.7961 -7.5167 -1.5796 16 6 7.6124 -7.2574 -2.6461 17 7 8.2015 -8.3770 -2.9636 18 7 7.8084 -9.3188 -2.1825 19 6 6.9461 -8.8481 -1.3143 20 8 6.3217 -9.5504 -0.3371 21 6 4.2720 -4.6724 0.6348 22 6 4.1821 -5.9577 1.3677 23 6 2.9495 -6.4476 1.8103 24 6 2.9105 -7.6509 2.4837 25 7 4.0162 -8.3306 2.7206 26 6 5.1995 -7.9014 2.3252 27 6 5.3284 -6.7106 1.6408 28 7 3.6503 -3.5538 0.9380 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8910 31 1 3.8750 -0.6806 -0.8889 32 1 5.2820 -2.5779 -1.7411 33 1 6.5421 -5.0306 -2.1054 34 1 7.7468 -6.3026 -3.1325 35 1 5.4792 -9.9394 -0.6094 36 1 2.0409 -5.8943 1.6235 37 1 1.9626 -8.0396 2.8256 38 1 6.0790 -8.4902 2.5402 39 1 6.3001 -6.3654 1.3196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788436979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:12 Heat of formation + Delta-G solvation = 214.772446 kcal Electronic energy + Delta-G solvation = -27950.836636 eV Core-core repulsion = 23899.301410 eV Total energy + Delta-G solvation = -4051.535226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.13274 -41.01767 -39.68834 -37.74714 -37.20142 -34.44018 -33.04285 -32.63827 -31.32757 -31.06253 -30.10275 -29.94187 -27.86935 -24.77470 -24.34992 -23.34637 -22.69170 -22.33798 -21.66523 -20.47039 -19.84887 -18.98895 -17.82223 -17.36511 -16.97747 -16.54567 -16.03612 -15.94047 -15.76553 -15.45499 -14.94699 -14.70528 -14.32266 -14.27115 -13.82824 -13.58723 -13.49560 -13.01429 -12.90074 -12.72724 -12.60112 -12.41880 -12.33513 -11.60420 -11.39264 -11.08606 -10.93490 -10.79178 -10.55990 -10.44769 -10.27755 -9.94090 -9.74056 -9.48106 -9.42579 -9.01021 -8.98858 -8.91294 -8.09956 -6.46879 -4.52910 0.52560 1.11348 1.26795 1.52792 1.73487 2.34541 2.44704 2.71615 2.97238 2.98412 3.02268 3.09846 3.34359 3.90741 3.96298 4.00797 4.19572 4.41938 4.54642 4.56478 4.73122 4.83204 4.99820 5.07137 5.16112 5.19093 5.28284 5.38351 5.48243 5.56065 5.69496 5.83929 5.90740 5.95702 6.03956 6.25094 6.38503 6.55374 6.77520 6.85479 6.97210 7.09643 7.54855 7.82284 8.04653 8.06397 8.33813 8.59025 9.05337 10.65194 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003126 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.439947 B = 8955.044449 C =10579.629406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.081 3.919 3 Si 0.872 3.128 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.224 3.776 10 N -0.308 5.308 11 C 0.120 3.880 12 C -0.249 4.249 13 C 0.229 3.771 14 N -0.275 5.275 15 N -0.343 5.343 16 C 0.119 3.881 17 N -0.270 5.270 18 N -0.287 5.287 19 C 0.391 3.609 20 O -0.426 6.426 21 C 0.123 3.877 22 C 0.040 3.960 23 C -0.144 4.144 24 C 0.090 3.910 25 N -0.484 5.484 26 C 0.099 3.901 27 C -0.111 4.111 28 N -0.239 5.239 29 H 0.272 0.728 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.187 0.813 33 H 0.130 0.870 34 H 0.222 0.778 35 H 0.407 0.593 36 H 0.138 0.862 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.386 -9.103 -2.425 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.105 0.895 9 C 0.106 3.894 10 N -0.083 5.083 11 C -0.036 4.036 12 C -0.265 4.265 13 C 0.024 3.976 14 N -0.081 5.081 15 N -0.131 5.131 16 C -0.169 4.169 17 N -0.112 5.112 18 N -0.140 5.140 19 C 0.087 3.913 20 O -0.224 6.224 21 C -0.046 4.046 22 C 0.030 3.970 23 C -0.166 4.166 24 C -0.066 4.066 25 N -0.194 5.194 26 C -0.058 4.058 27 C -0.132 4.132 28 N -0.058 5.058 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.204 0.796 33 H 0.147 0.853 34 H 0.238 0.762 35 H 0.265 0.735 36 H 0.156 0.844 37 H 0.172 0.828 38 H 0.170 0.830 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.269 -10.631 -0.830 15.514 hybrid contribution -0.106 2.921 -1.350 3.220 sum 11.163 -7.709 -2.179 13.740 Atomic orbital electron populations 1.69845 1.06197 1.27701 1.47780 1.24805 0.94878 0.98835 0.93892 0.86926 0.80423 0.83824 0.79051 1.19533 1.20264 1.18849 1.20980 0.87177 0.95958 1.54279 0.89476 1.20324 0.98139 0.71926 0.99046 1.49050 1.30271 1.11638 1.17378 1.22648 0.92972 0.92952 0.95025 1.18934 1.11580 0.93208 1.02774 1.23928 0.90870 0.89444 0.93328 1.75988 1.11943 1.02290 1.17853 1.48265 1.31662 1.09509 1.23688 1.26577 0.96211 1.02536 0.91545 1.74219 1.20902 0.96415 1.19686 1.74795 1.13137 1.22103 1.03952 1.21984 0.97568 0.78906 0.92828 1.84895 1.39641 1.66668 1.31222 1.21803 0.95728 0.92804 0.94255 1.17941 0.93678 0.90406 0.94960 1.22269 0.98182 0.97411 0.98690 1.22597 0.96916 0.91478 0.95638 1.67609 0.98792 1.34062 1.18910 1.22506 0.95260 0.93476 0.94517 1.21919 0.98451 0.95394 0.97485 1.77720 1.19280 0.96053 1.12770 0.91821 0.93126 0.92754 0.79636 0.85313 0.76158 0.73496 0.84430 0.82773 0.83035 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.30 13.96 55.43 0.77 -23.53 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 17.97 27.47 -169.99 -4.67 13.30 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.06 6.54 56.52 0.37 -4.69 16 7 C -0.55 -13.54 9.76 -34.44 -0.34 -13.87 16 8 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 9 C 0.22 4.35 5.28 -5.20 -0.03 4.32 16 10 N -0.31 -5.41 3.63 -62.26 -0.23 -5.63 16 11 C 0.12 1.52 11.34 -16.88 -0.19 1.33 16 12 C -0.25 -3.19 6.24 -103.38 -0.64 -3.83 16 13 C 0.23 2.27 10.58 -14.71 -0.16 2.11 16 14 N -0.27 -3.16 7.72 32.13 0.25 -2.91 16 15 N -0.34 -3.95 3.94 -14.83 -0.06 -4.01 16 16 C 0.12 1.22 12.03 -88.82 -1.07 0.15 16 17 N -0.27 -3.60 12.18 29.93 0.36 -3.23 16 18 N -0.29 -4.10 12.22 29.72 0.36 -3.74 16 19 C 0.39 4.92 9.48 -88.45 -0.84 4.08 16 20 O -0.43 -4.56 13.64 -18.41 -0.25 -4.81 16 21 C 0.12 1.96 6.92 -80.56 -0.56 1.40 16 22 C 0.04 0.59 5.51 -104.60 -0.58 0.01 16 23 C -0.14 -2.03 9.89 -39.09 -0.39 -2.42 16 24 C 0.09 1.14 11.17 -17.61 -0.20 0.95 16 25 N -0.48 -6.48 10.35 -13.35 -0.14 -6.61 16 26 C 0.10 1.24 11.17 -17.61 -0.20 1.04 16 27 C -0.11 -1.45 7.67 -39.09 -0.30 -1.75 16 28 N -0.24 -4.52 12.33 34.57 0.43 -4.10 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.05 0.99 7.20 -51.93 -0.37 0.62 16 31 H 0.05 0.91 7.48 -51.93 -0.39 0.52 16 32 H 0.19 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 0.73 6.66 -52.49 -0.35 0.38 16 34 H 0.22 1.20 7.15 -52.49 -0.38 0.82 16 35 H 0.41 2.75 9.06 45.56 0.41 3.17 16 36 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 37 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.13 1.63 6.94 -52.48 -0.36 1.27 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -33.06 353.80 -6.13 -39.19 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -2.72 Total: 5.26 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -5.57 Total: -4.50 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 1.75 Total: -53.77 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.25 Total: -4.81 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.67 Total: 13.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.06 -6.13 -39.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788436979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.965 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 220.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds