Wall clock time and date at job start Tue Mar 31 2020 22:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00463 * 2 1 4 4 H 1.48496 * 109.46690 * 269.99809 * 3 2 1 5 5 H 1.48501 * 109.46902 * 29.99628 * 3 2 1 6 6 H 1.48493 * 109.47502 * 149.99706 * 3 2 1 7 7 C 1.37879 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99729 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00535 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47588 * 179.97438 * 9 7 2 11 11 C 1.34548 * 125.23955 * 124.71763 * 10 9 7 12 12 C 1.36806 * 108.04715 * 179.83775 * 11 10 9 13 13 C 1.47338 * 126.69264 * 180.13669 * 12 11 10 14 14 N 1.29805 * 119.99924 * 185.34965 * 13 12 11 15 15 N 1.40101 * 120.00085 * 179.97438 * 14 13 12 16 16 C 1.36785 * 127.14828 * 359.68381 * 15 14 13 17 17 N 1.30430 * 107.25808 * 179.83409 * 16 15 14 18 18 N 1.28523 * 110.05453 * 0.44437 * 17 16 15 19 19 C 1.31100 * 109.90879 * 359.72010 * 18 17 16 20 20 O 1.35571 * 126.46144 * 180.02562 * 19 18 17 21 21 C 1.46523 * 106.60724 * 0.41397 * 12 11 10 22 22 C 1.48226 * 126.50510 * 179.74453 * 21 12 11 23 23 C 1.39836 * 120.91064 * 223.85871 * 22 21 12 24 24 C 1.37944 * 119.01386 * 179.72880 * 23 22 21 25 25 N 1.31937 * 120.88626 * 0.56124 * 24 23 22 26 26 C 1.31933 * 122.02119 * 359.70924 * 25 24 23 27 27 C 1.37951 * 120.88676 * 0.02562 * 26 25 24 28 28 N 1.31523 * 106.98868 * 359.74442 * 21 12 11 29 29 H 0.97004 * 120.00127 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47185 * 59.99300 * 9 7 2 31 31 H 1.09004 * 109.46414 * 300.00066 * 9 7 2 32 32 H 1.07994 * 125.96955 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.00104 * 5.35172 * 13 12 11 34 34 H 1.08002 * 126.36874 * 0.02562 * 16 15 14 35 35 H 0.96701 * 113.99697 * 269.96787 * 20 19 18 36 36 H 1.08007 * 120.48866 * 0.02562 * 23 22 21 37 37 H 1.08003 * 119.55697 * 180.26994 * 24 23 22 38 38 H 1.08003 * 119.55801 * 180.02562 * 26 25 24 39 39 H 1.08003 * 120.49642 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 4.8489 -3.0993 -0.9004 12 6 5.0702 -4.4071 -0.5649 13 6 5.9367 -5.3637 -1.2754 14 7 5.9725 -6.6069 -0.9037 15 7 6.7961 -7.5167 -1.5796 16 6 7.6124 -7.2574 -2.6461 17 7 8.2015 -8.3770 -2.9636 18 7 7.8084 -9.3188 -2.1825 19 6 6.9461 -8.8481 -1.3143 20 8 6.3217 -9.5504 -0.3371 21 6 4.2720 -4.6724 0.6348 22 6 4.1821 -5.9577 1.3677 23 6 2.9495 -6.4476 1.8103 24 6 2.9105 -7.6509 2.4837 25 7 4.0162 -8.3306 2.7206 26 6 5.1995 -7.9014 2.3252 27 6 5.3284 -6.7106 1.6408 28 7 3.6503 -3.5538 0.9380 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8910 31 1 3.8750 -0.6806 -0.8889 32 1 5.2820 -2.5779 -1.7411 33 1 6.5421 -5.0306 -2.1054 34 1 7.7468 -6.3026 -3.1325 35 1 5.4792 -9.9394 -0.6094 36 1 2.0409 -5.8943 1.6235 37 1 1.9626 -8.0396 2.8256 38 1 6.0790 -8.4902 2.5402 39 1 6.3001 -6.3654 1.3196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788436979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:11 Heat of formation + Delta-G solvation = 189.500562 kcal Electronic energy + Delta-G solvation = -27951.932507 eV Core-core repulsion = 23899.301410 eV Total energy + Delta-G solvation = -4052.631097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.99392 -42.13800 -40.74695 -38.56110 -38.07231 -35.83818 -34.57214 -33.57836 -32.68246 -32.11100 -31.02668 -30.96802 -29.28659 -25.70197 -25.67729 -24.37940 -23.85871 -23.29326 -22.71818 -21.52757 -20.84454 -19.88887 -19.12961 -18.70633 -18.01952 -17.43048 -17.23062 -17.05205 -16.66884 -16.40023 -16.29996 -15.72151 -15.54674 -15.35167 -14.94972 -14.69462 -14.61130 -14.38500 -14.05783 -13.85030 -13.70739 -13.41222 -13.22656 -13.03493 -12.66672 -12.50811 -12.23613 -11.95955 -11.79358 -11.55586 -11.35733 -11.26431 -10.95249 -10.84802 -10.48243 -10.36223 -10.10648 -9.98886 -9.19209 -8.38176 -6.49830 -0.31719 0.05345 0.24683 0.67878 0.85434 1.25920 1.37641 1.39446 1.48122 1.58839 1.61952 2.03926 2.28696 2.51469 2.91549 2.95270 3.12644 3.36915 3.52173 3.58798 3.79483 3.90259 4.02866 4.11355 4.13674 4.22475 4.28156 4.40421 4.51946 4.63303 4.67110 4.77784 4.78094 4.88771 4.92333 5.10497 5.20061 5.32661 5.46463 5.74269 5.82829 6.15563 6.23561 6.55436 6.69603 6.78782 7.02547 7.13533 7.47199 8.78593 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003126 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.439947 B = 8955.044449 C =10579.629406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.250 1.250 5 H -0.290 1.290 6 H -0.234 1.234 7 C -0.550 4.550 8 H 0.027 0.973 9 C 0.232 3.768 10 N -0.337 5.337 11 C 0.137 3.863 12 C -0.247 4.247 13 C 0.238 3.762 14 N -0.294 5.294 15 N -0.345 5.345 16 C 0.138 3.862 17 N -0.306 5.306 18 N -0.320 5.320 19 C 0.386 3.614 20 O -0.431 6.431 21 C 0.115 3.885 22 C 0.026 3.974 23 C -0.161 4.161 24 C 0.094 3.906 25 N -0.494 5.494 26 C 0.103 3.897 27 C -0.103 4.103 28 N -0.303 5.303 29 H 0.271 0.729 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.184 0.816 34 H 0.270 0.730 35 H 0.422 0.578 36 H 0.123 0.877 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.613 -8.011 -3.930 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.174 1.174 5 H -0.216 1.216 6 H -0.157 1.157 7 C -0.588 4.588 8 H 0.046 0.954 9 C 0.113 3.887 10 N -0.113 5.113 11 C -0.016 4.016 12 C -0.263 4.263 13 C 0.033 3.967 14 N -0.099 5.099 15 N -0.133 5.133 16 C -0.150 4.150 17 N -0.147 5.147 18 N -0.172 5.172 19 C 0.081 3.919 20 O -0.232 6.232 21 C -0.055 4.055 22 C 0.016 3.984 23 C -0.182 4.182 24 C -0.062 4.062 25 N -0.204 5.204 26 C -0.054 4.054 27 C -0.124 4.124 28 N -0.123 5.123 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.260 0.740 33 H 0.201 0.799 34 H 0.286 0.714 35 H 0.282 0.718 36 H 0.141 0.859 37 H 0.195 0.805 38 H 0.188 0.812 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.528 -9.598 -2.349 17.570 hybrid contribution -1.150 2.397 -0.863 2.795 sum 13.378 -7.201 -3.212 15.529 Atomic orbital electron populations 1.70047 1.08774 1.28830 1.50440 1.25909 0.95654 1.03595 0.93223 0.85670 0.79612 0.77209 0.80199 1.17363 1.21551 1.15701 1.21199 0.90573 0.93683 1.53312 0.95412 1.20091 0.94145 0.73844 1.00670 1.48798 1.32496 1.11019 1.19019 1.23547 0.90662 0.92784 0.94625 1.19185 1.11315 0.94053 1.01699 1.24151 0.90199 0.88429 0.93921 1.75981 1.12227 1.03282 1.18454 1.48264 1.31906 1.09123 1.24023 1.27525 0.93943 1.03319 0.90227 1.74151 1.22522 0.97454 1.20580 1.74720 1.14276 1.23228 1.05010 1.22052 0.97513 0.79564 0.92752 1.84851 1.40573 1.66738 1.31069 1.22210 0.95544 0.92305 0.95407 1.18123 0.94325 0.90475 0.95475 1.22275 0.97842 0.98216 0.99883 1.22908 0.97807 0.90748 0.94745 1.67688 0.99158 1.34250 1.19265 1.22813 0.95618 0.93308 0.93633 1.21902 0.97999 0.95237 0.97310 1.77621 1.21777 0.97684 1.15180 0.91953 0.93213 0.88536 0.74021 0.79934 0.71413 0.71808 0.85916 0.80508 0.81205 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.60 13.96 21.45 0.30 -54.30 16 2 C 0.02 0.80 5.47 84.66 0.46 1.26 16 3 Si 0.95 36.27 27.47 68.60 1.88 38.16 16 4 H -0.25 -8.66 7.11 99.48 0.71 -7.96 16 5 H -0.29 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.23 -7.73 6.54 99.48 0.65 -7.08 16 7 C -0.55 -28.08 9.76 25.60 0.25 -27.83 16 8 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 9 C 0.23 8.64 5.28 85.63 0.45 9.09 16 10 N -0.34 -11.45 3.63 -350.88 -1.27 -12.72 16 11 C 0.14 2.97 11.34 83.94 0.95 3.93 16 12 C -0.25 -5.63 6.24 -19.06 -0.12 -5.75 16 13 C 0.24 3.66 10.58 87.39 0.92 4.58 16 14 N -0.29 -5.85 7.72 -52.25 -0.40 -6.25 16 15 N -0.35 -6.93 3.94 -311.46 -1.23 -8.16 16 16 C 0.14 2.30 12.03 179.72 2.16 4.46 16 17 N -0.31 -7.53 12.18 -59.23 -0.72 -8.26 16 18 N -0.32 -8.81 12.22 -173.39 -2.12 -10.93 16 19 C 0.39 9.13 9.48 179.59 1.70 10.84 16 20 O -0.43 -8.75 13.64 -88.79 -1.21 -9.96 16 21 C 0.11 3.64 6.92 44.01 0.30 3.94 16 22 C 0.03 0.77 5.51 -19.85 -0.11 0.66 16 23 C -0.16 -4.71 9.89 22.59 0.22 -4.49 16 24 C 0.09 2.39 11.17 84.61 0.95 3.33 16 25 N -0.49 -12.80 10.35 -196.15 -2.03 -14.83 16 26 C 0.10 2.45 11.17 84.61 0.95 3.39 16 27 C -0.10 -2.59 7.67 22.59 0.17 -2.41 16 28 N -0.30 -11.81 12.33 -44.55 -0.55 -12.36 16 29 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.05 1.86 7.20 -2.39 -0.02 1.84 16 31 H 0.10 2.81 7.48 -2.39 -0.02 2.79 16 32 H 0.24 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.18 0.78 6.66 -2.91 -0.02 0.76 16 34 H 0.27 1.26 7.15 -2.91 -0.02 1.23 16 35 H 0.42 5.34 9.06 -74.06 -0.67 4.67 16 36 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.18 3.49 8.06 -2.91 -0.02 3.46 16 38 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.13 3.18 6.94 -2.91 -0.02 3.16 16 Total: -1.00 -80.08 353.80 2.33 -77.76 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.41 Total: 16.86 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 9.27 Total: 5.00 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -8.02 Total: -127.80 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.21 Total: -9.96 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 1.88 Total: 38.16 kcal Total: -80.08 2.33 -77.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788436979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.257 kcal (2) G-P(sol) polarization free energy of solvation -80.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds