Wall clock time and date at job start Tue Mar 31 2020 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99758 * 2 1 4 4 H 1.48495 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47022 * 300.00312 * 3 2 1 6 6 H 1.48497 * 109.47129 * 60.00575 * 3 2 1 7 7 C 1.37875 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47213 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99850 * 265.02248 * 10 9 7 12 12 C 1.50706 * 109.46891 * 274.19348 * 11 10 9 13 13 C 1.34510 * 125.78780 * 89.72197 * 12 11 10 14 14 C 1.41383 * 106.83881 * 179.88651 * 13 12 11 15 15 C 1.34520 * 106.83864 * 0.36991 * 14 13 12 16 16 O 1.34297 * 108.42097 * 359.77158 * 15 14 13 17 17 C 1.34776 * 119.99567 * 85.02280 * 10 9 7 18 18 O 1.21569 * 120.00741 * 354.40464 * 17 10 9 19 19 C 1.47710 * 119.99458 * 174.68034 * 17 10 9 20 20 C 1.41510 * 126.51865 * 184.57434 * 19 17 10 21 21 C 1.35363 * 105.50244 * 179.87679 * 20 19 17 22 22 N 1.35034 * 107.23064 * 0.38423 * 21 20 19 23 23 C 1.46504 * 124.88526 * 179.71964 * 22 21 20 24 24 C 1.53003 * 109.46653 * 125.00197 * 23 22 21 25 25 F 1.39899 * 109.47463 * 65.00200 * 24 23 22 26 26 F 1.39906 * 109.46993 * 185.00295 * 24 23 22 27 27 N 1.28465 * 110.23162 * 359.74698 * 22 21 20 28 28 H 0.96995 * 120.00208 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46573 * 60.00129 * 9 7 2 30 30 H 1.08998 * 109.46941 * 300.00367 * 9 7 2 31 31 H 1.08999 * 109.47244 * 34.19318 * 11 10 9 32 32 H 1.08995 * 109.47039 * 154.19517 * 11 10 9 33 33 H 1.07996 * 126.58265 * 0.02562 * 13 12 11 34 34 H 1.07997 * 126.58110 * 180.15830 * 14 13 12 35 35 H 1.08001 * 125.78366 * 179.74929 * 15 14 13 36 36 H 1.07995 * 127.24550 * 359.97438 * 20 19 17 37 37 H 1.08000 * 126.38664 * 180.10940 * 21 20 19 38 38 H 1.08998 * 109.47337 * 245.00075 * 23 22 21 39 39 H 1.08996 * 109.46883 * 5.00517 * 23 22 21 40 40 H 1.09003 * 109.47243 * 305.00170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.5956 -4.2409 -1.2645 12 6 1.5952 -5.3083 -1.6267 13 6 0.4824 -5.1271 -2.3602 14 6 -0.1553 -6.3854 -2.4547 15 6 0.6018 -7.2586 -1.7662 16 8 1.6607 -6.6006 -1.2669 17 6 2.7181 -4.0590 1.1623 18 8 2.4729 -3.4746 2.1998 19 6 3.5853 -5.2546 1.1753 20 6 4.1227 -5.8927 2.3183 21 6 4.8439 -6.9358 1.8449 22 7 4.7464 -6.9111 0.4983 23 6 5.3879 -7.8687 -0.4060 24 6 4.3305 -8.4997 -1.3141 25 9 3.7821 -7.5165 -2.1447 26 9 4.9232 -9.4952 -2.0983 27 7 4.0105 -5.9267 0.1242 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.6237 -3.4873 -2.0515 32 1 3.5828 -4.6900 -1.1559 33 1 0.1426 -4.1990 -2.7956 34 1 -1.0756 -6.6030 -2.9763 35 1 0.3930 -8.3103 -1.6367 36 1 3.9849 -5.6084 3.3510 37 1 5.3981 -7.6515 2.4340 38 1 6.1291 -7.3521 -1.0159 39 1 5.8772 -8.6481 0.1780 40 1 3.5424 -8.9398 -0.7029 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789917786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:31 Heat of formation + Delta-G solvation = -14.052817 kcal Electronic energy + Delta-G solvation = -30690.552483 eV Core-core repulsion = 26146.112711 eV Total energy + Delta-G solvation = -4544.439772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.22435 -47.17568 -42.61386 -42.02755 -38.65081 -35.14126 -34.25517 -32.69582 -32.44665 -30.72221 -29.94806 -29.38509 -27.32512 -25.39473 -24.50073 -23.14140 -21.59820 -21.45104 -21.11695 -20.20393 -18.90315 -18.14741 -17.73238 -17.30234 -17.04123 -16.70162 -16.18344 -15.97905 -15.43669 -15.34812 -15.02652 -14.47056 -14.20575 -14.17443 -13.71797 -13.61205 -13.52852 -13.33196 -13.14088 -12.70195 -12.52404 -12.47123 -12.36812 -12.31396 -12.08154 -11.60187 -11.46879 -11.20251 -10.89262 -10.59040 -10.23191 -10.05867 -9.61654 -9.44884 -9.19786 -9.16299 -9.01755 -8.38979 -8.08358 -7.71539 -5.99262 -4.03138 1.73571 2.13251 2.14978 2.29616 3.02545 3.26189 3.34563 3.41932 3.42307 3.46902 3.82529 3.85399 3.99229 4.09460 4.29040 4.50040 4.64259 4.78065 4.85730 4.93697 5.13479 5.31020 5.37078 5.44072 5.48556 5.73079 5.77756 5.88570 6.12136 6.21860 6.37285 6.49067 6.54646 6.71753 6.93354 7.10807 7.44674 7.52217 7.66497 7.93295 7.98467 8.25715 8.39012 8.92441 9.07932 9.61393 11.09102 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.004161 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.166703 B = 6727.855827 C = 7840.405823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.249 3.751 10 N -0.579 5.579 11 C 0.175 3.825 12 C 0.003 3.997 13 C -0.209 4.209 14 C -0.211 4.211 15 C -0.064 4.064 16 O -0.156 6.156 17 C 0.589 3.411 18 O -0.522 6.522 19 C 0.007 3.993 20 C -0.176 4.176 21 C -0.022 4.022 22 N -0.300 5.300 23 C 0.078 3.922 24 C 0.258 3.742 25 F -0.173 7.173 26 F -0.200 7.200 27 N -0.244 5.244 28 H 0.262 0.738 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.189 0.811 36 H 0.162 0.838 37 H 0.180 0.820 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 -21.700 -2.819 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.130 3.870 10 N -0.310 5.310 11 C 0.050 3.950 12 C -0.049 4.049 13 C -0.229 4.229 14 C -0.231 4.231 15 C -0.133 4.133 16 O -0.051 6.051 17 C 0.373 3.627 18 O -0.396 6.396 19 C -0.155 4.155 20 C -0.204 4.204 21 C -0.163 4.163 22 N -0.088 5.088 23 C -0.045 4.045 24 C 0.203 3.797 25 F -0.154 7.154 26 F -0.182 7.182 27 N -0.078 5.078 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.206 0.794 36 H 0.180 0.820 37 H 0.197 0.803 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.526 -21.459 -3.346 23.715 hybrid contribution 0.138 0.769 0.501 0.928 sum 9.664 -20.689 -2.845 23.012 Atomic orbital electron populations 1.69943 1.05969 1.26847 1.50679 1.24912 0.94849 0.99148 0.95117 0.86445 0.80075 0.83416 0.77505 1.19769 1.21043 1.20917 1.21454 0.93481 0.90423 1.50704 0.92220 1.19360 0.87140 0.81901 0.98602 1.48173 1.44886 1.33882 1.04044 1.20367 0.96272 0.90326 0.88045 1.23061 0.99383 0.82906 0.99588 1.21672 0.96594 0.99115 1.05545 1.21721 1.02367 0.93534 1.05449 1.23783 0.89253 0.98213 1.02013 1.84073 1.40785 1.20325 1.59870 1.16969 0.79759 0.81506 0.84417 1.90784 1.59980 1.56820 1.31981 1.22541 1.03442 0.99246 0.90235 1.21812 1.01582 0.96703 1.00276 1.22790 1.06309 1.03319 0.83875 1.45255 1.36937 1.21366 1.05239 1.22856 0.95253 0.92725 0.93668 1.21880 0.93154 0.79189 0.85446 1.93147 1.86268 1.62266 1.73717 1.93016 1.85748 1.62063 1.77360 1.73823 1.08714 0.99260 1.26010 0.92820 0.94420 0.94139 0.87691 0.86323 0.83610 0.84270 0.79411 0.81995 0.80295 0.86788 0.85253 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -14.97 9.35 -34.44 -0.32 -15.29 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.25 6.63 5.09 -5.19 -0.03 6.60 16 10 N -0.58 -13.09 2.45 -177.60 -0.44 -13.53 16 11 C 0.17 3.27 5.49 -5.19 -0.03 3.24 16 12 C 0.00 0.05 6.76 -35.62 -0.24 -0.19 16 13 C -0.21 -3.62 10.81 -39.70 -0.43 -4.05 16 14 C -0.21 -3.14 10.91 -39.70 -0.43 -3.57 16 15 C -0.06 -0.88 12.09 29.42 0.36 -0.53 16 16 O -0.16 -2.49 7.16 5.73 0.04 -2.45 16 17 C 0.59 13.33 7.63 -12.39 -0.09 13.24 16 18 O -0.52 -13.68 16.65 5.31 0.09 -13.59 16 19 C 0.01 0.13 6.85 -82.76 -0.57 -0.44 16 20 C -0.18 -2.49 10.81 -39.36 -0.43 -2.92 16 21 C -0.02 -0.22 11.40 -17.17 -0.20 -0.41 16 22 N -0.30 -3.23 3.41 -61.33 -0.21 -3.44 16 23 C 0.08 0.51 6.63 -4.04 -0.03 0.48 16 24 C 0.26 2.10 5.48 37.16 0.20 2.31 16 25 F -0.17 -2.12 14.05 2.25 0.03 -2.09 16 26 F -0.20 -1.67 17.34 2.25 0.04 -1.63 16 27 N -0.24 -3.67 6.23 33.42 0.21 -3.46 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.04 1.01 8.03 -51.93 -0.42 0.59 16 30 H 0.04 1.21 7.66 -51.93 -0.40 0.81 16 31 H 0.11 1.92 8.10 -51.93 -0.42 1.50 16 32 H 0.12 2.09 4.87 -51.93 -0.25 1.84 16 33 H 0.15 2.51 8.06 -52.49 -0.42 2.09 16 34 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.13 0.32 8.04 -51.93 -0.42 -0.10 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -36.25 355.58 -5.90 -42.16 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.41 Total: 1.42 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.33 Total: 0.15 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.30 Total: -46.44 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.13 Total: -16.04 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.25 -5.90 -42.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789917786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.103 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds