Wall clock time and date at job start Tue Mar 31 2020 22:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99758 * 2 1 4 4 H 1.48495 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47022 * 300.00312 * 3 2 1 6 6 H 1.48497 * 109.47129 * 60.00575 * 3 2 1 7 7 C 1.37875 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47213 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99850 * 265.02248 * 10 9 7 12 12 C 1.50706 * 109.46891 * 274.19348 * 11 10 9 13 13 C 1.34510 * 125.78780 * 89.72197 * 12 11 10 14 14 C 1.41383 * 106.83881 * 179.88651 * 13 12 11 15 15 C 1.34520 * 106.83864 * 0.36991 * 14 13 12 16 16 O 1.34297 * 108.42097 * 359.77158 * 15 14 13 17 17 C 1.34776 * 119.99567 * 85.02280 * 10 9 7 18 18 O 1.21569 * 120.00741 * 354.40464 * 17 10 9 19 19 C 1.47710 * 119.99458 * 174.68034 * 17 10 9 20 20 C 1.41510 * 126.51865 * 184.57434 * 19 17 10 21 21 C 1.35363 * 105.50244 * 179.87679 * 20 19 17 22 22 N 1.35034 * 107.23064 * 0.38423 * 21 20 19 23 23 C 1.46504 * 124.88526 * 179.71964 * 22 21 20 24 24 C 1.53003 * 109.46653 * 125.00197 * 23 22 21 25 25 F 1.39899 * 109.47463 * 65.00200 * 24 23 22 26 26 F 1.39906 * 109.46993 * 185.00295 * 24 23 22 27 27 N 1.28465 * 110.23162 * 359.74698 * 22 21 20 28 28 H 0.96995 * 120.00208 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46573 * 60.00129 * 9 7 2 30 30 H 1.08998 * 109.46941 * 300.00367 * 9 7 2 31 31 H 1.08999 * 109.47244 * 34.19318 * 11 10 9 32 32 H 1.08995 * 109.47039 * 154.19517 * 11 10 9 33 33 H 1.07996 * 126.58265 * 0.02562 * 13 12 11 34 34 H 1.07997 * 126.58110 * 180.15830 * 14 13 12 35 35 H 1.08001 * 125.78366 * 179.74929 * 15 14 13 36 36 H 1.07995 * 127.24550 * 359.97438 * 20 19 17 37 37 H 1.08000 * 126.38664 * 180.10940 * 21 20 19 38 38 H 1.08998 * 109.47337 * 245.00075 * 23 22 21 39 39 H 1.08996 * 109.46883 * 5.00517 * 23 22 21 40 40 H 1.09003 * 109.47243 * 305.00170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.5956 -4.2409 -1.2645 12 6 1.5952 -5.3083 -1.6267 13 6 0.4824 -5.1271 -2.3602 14 6 -0.1553 -6.3854 -2.4547 15 6 0.6018 -7.2586 -1.7662 16 8 1.6607 -6.6006 -1.2669 17 6 2.7181 -4.0590 1.1623 18 8 2.4729 -3.4746 2.1998 19 6 3.5853 -5.2546 1.1753 20 6 4.1227 -5.8927 2.3183 21 6 4.8439 -6.9358 1.8449 22 7 4.7464 -6.9111 0.4983 23 6 5.3879 -7.8687 -0.4060 24 6 4.3305 -8.4997 -1.3141 25 9 3.7821 -7.5165 -2.1447 26 9 4.9232 -9.4952 -2.0983 27 7 4.0105 -5.9267 0.1242 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.6237 -3.4873 -2.0515 32 1 3.5828 -4.6900 -1.1559 33 1 0.1426 -4.1990 -2.7956 34 1 -1.0756 -6.6030 -2.9763 35 1 0.3930 -8.3103 -1.6367 36 1 3.9849 -5.6084 3.3510 37 1 5.3981 -7.6515 2.4340 38 1 6.1291 -7.3521 -1.0159 39 1 5.8772 -8.6481 0.1780 40 1 3.5424 -8.9398 -0.7029 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789917786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:30 Heat of formation + Delta-G solvation = -37.784439 kcal Electronic energy + Delta-G solvation = -30691.581563 eV Core-core repulsion = 26146.112711 eV Total energy + Delta-G solvation = -4545.468852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88381 -47.88057 -43.65383 -43.25879 -40.38921 -36.94093 -35.20802 -34.72554 -33.72639 -31.83386 -31.40836 -30.44344 -29.09444 -26.82772 -25.97144 -24.45582 -22.90975 -22.56199 -22.25349 -21.48013 -20.28171 -18.94661 -18.81609 -18.58278 -18.13651 -17.92750 -17.70548 -17.27501 -16.88143 -16.61502 -16.25797 -16.15452 -15.67466 -15.08986 -14.93846 -14.70601 -14.55660 -14.33448 -14.22277 -14.04356 -13.96732 -13.85476 -13.61890 -13.51615 -13.29815 -13.19589 -12.96674 -12.82548 -12.59028 -12.25514 -12.12732 -11.76770 -11.39966 -10.94434 -10.71215 -10.64194 -10.21786 -10.05517 -9.64390 -9.30758 -8.22153 -6.36211 0.56643 0.87239 1.22580 1.34232 1.36978 1.39382 1.51898 1.74908 2.17083 2.31266 2.46438 2.54571 2.69877 3.07695 3.26449 3.32017 3.58913 3.79542 3.92403 4.02075 4.05258 4.18671 4.24131 4.36753 4.39010 4.43343 4.64897 4.78210 4.85605 4.94426 5.01950 5.09005 5.17669 5.28021 5.37075 5.53143 5.68455 5.78524 5.91470 6.04087 6.36435 6.56310 6.71786 6.90145 7.23953 7.38599 8.85966 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.004161 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.166703 B = 6727.855827 C = 7840.405823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.268 3.732 10 N -0.586 5.586 11 C 0.179 3.821 12 C -0.016 4.016 13 C -0.227 4.227 14 C -0.227 4.227 15 C -0.047 4.047 16 O -0.155 6.155 17 C 0.580 3.420 18 O -0.577 6.577 19 C -0.033 4.033 20 C -0.205 4.205 21 C 0.022 3.978 22 N -0.286 5.286 23 C 0.073 3.927 24 C 0.252 3.748 25 F -0.201 7.201 26 F -0.201 7.201 27 N -0.253 5.253 28 H 0.268 0.732 29 H 0.027 0.973 30 H -0.005 1.005 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.163 0.837 35 H 0.237 0.763 36 H 0.159 0.841 37 H 0.242 0.758 38 H 0.122 0.878 39 H 0.186 0.814 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.913 -24.849 -3.046 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.148 3.852 10 N -0.316 5.316 11 C 0.056 3.944 12 C -0.068 4.068 13 C -0.247 4.247 14 C -0.246 4.246 15 C -0.115 4.115 16 O -0.049 6.049 17 C 0.368 3.632 18 O -0.456 6.456 19 C -0.192 4.192 20 C -0.233 4.233 21 C -0.119 4.119 22 N -0.074 5.074 23 C -0.047 4.047 24 C 0.198 3.802 25 F -0.183 7.183 26 F -0.182 7.182 27 N -0.089 5.089 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.013 0.987 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.181 0.819 35 H 0.253 0.747 36 H 0.176 0.824 37 H 0.258 0.742 38 H 0.140 0.860 39 H 0.203 0.797 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.874 -24.639 -3.621 27.590 hybrid contribution -0.563 1.524 0.520 1.706 sum 11.311 -23.115 -3.101 25.920 Atomic orbital electron populations 1.70057 1.07512 1.28129 1.50994 1.25829 0.95799 1.02927 0.94296 0.85349 0.78691 0.78577 0.78074 1.19318 1.19284 1.20487 1.21658 0.93171 0.91721 1.51279 0.93047 1.18776 0.87425 0.83295 0.95730 1.48125 1.44230 1.33283 1.05933 1.20379 0.97502 0.90542 0.85988 1.22673 0.99560 0.83672 1.00936 1.21850 0.97086 1.00064 1.05732 1.22009 1.03599 0.92452 1.06534 1.24700 0.87451 0.99766 0.99546 1.84058 1.41623 1.19410 1.59855 1.17694 0.79604 0.82590 0.83312 1.90717 1.62194 1.59066 1.33591 1.21842 1.05469 0.99085 0.92805 1.21983 1.03307 0.98447 0.99530 1.23495 1.03415 1.01756 0.83259 1.45653 1.34934 1.20215 1.06630 1.23352 0.94462 0.93065 0.93852 1.22164 0.94083 0.78781 0.85175 1.93099 1.86869 1.63546 1.74742 1.93017 1.85773 1.61926 1.77477 1.73637 1.09500 1.00346 1.25403 0.92338 0.95485 0.98672 0.88431 0.84925 0.84825 0.81931 0.74737 0.82369 0.74212 0.85990 0.79680 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 2 C 0.01 0.62 5.46 84.65 0.46 1.09 16 3 Si 0.97 46.56 29.54 68.60 2.03 48.58 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.54 -32.77 9.35 25.60 0.24 -32.53 16 8 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 9 C 0.27 15.51 5.09 85.63 0.44 15.95 16 10 N -0.59 -28.49 2.45 -834.07 -2.05 -30.54 16 11 C 0.18 7.10 5.49 85.64 0.47 7.57 16 12 C -0.02 -0.60 6.76 24.83 0.17 -0.43 16 13 C -0.23 -8.16 10.81 22.19 0.24 -7.92 16 14 C -0.23 -6.53 10.91 22.19 0.24 -6.28 16 15 C -0.05 -1.18 12.09 66.97 0.81 -0.37 16 16 O -0.15 -4.80 7.16 -2.41 -0.02 -4.82 16 17 C 0.58 28.10 7.63 86.75 0.66 28.76 16 18 O -0.58 -32.81 16.65 -3.93 -0.07 -32.87 16 19 C -0.03 -1.19 6.85 42.46 0.29 -0.90 16 20 C -0.20 -5.57 10.81 22.41 0.24 -5.32 16 21 C 0.02 0.34 11.40 83.54 0.95 1.29 16 22 N -0.29 -5.05 3.41 -347.95 -1.19 -6.24 16 23 C 0.07 0.58 6.63 86.38 0.57 1.16 16 24 C 0.25 3.14 5.48 71.98 0.39 3.54 16 25 F -0.20 -4.50 14.05 44.97 0.63 -3.87 16 26 F -0.20 -2.60 17.34 44.97 0.78 -1.82 16 27 N -0.25 -7.29 6.23 -48.17 -0.30 -7.59 16 28 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.03 1.59 8.03 -2.39 -0.02 1.57 16 30 H 0.00 -0.32 7.66 -2.39 -0.02 -0.33 16 31 H 0.10 3.87 8.10 -2.39 -0.02 3.85 16 32 H 0.13 4.85 4.87 -2.39 -0.01 4.84 16 33 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 35 H 0.24 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.24 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.19 -0.51 8.04 -2.39 -0.02 -0.53 16 40 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -87.77 355.58 7.37 -80.39 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.08 Total: 10.51 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.18 Total: 5.60 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -3.25 Total: -101.70 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.08 Total: -37.70 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 1.41 Total: -5.69 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -87.77 7.37 -80.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789917786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.609 kcal (2) G-P(sol) polarization free energy of solvation -87.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds