Wall clock time and date at job start Tue Mar 31 2020 22:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86793 * 120.00203 * 2 1 4 4 H 1.48499 * 109.47458 * 270.00305 * 3 2 1 5 5 H 1.48509 * 109.46808 * 30.00111 * 3 2 1 6 6 H 1.48501 * 109.47364 * 149.99947 * 3 2 1 7 7 C 1.38988 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.37322 * 120.00125 * 0.02562 * 7 2 1 10 10 C 1.36504 * 126.07133 * 180.28219 * 9 7 2 11 11 C 1.35681 * 107.50710 * 180.15483 * 10 9 7 12 12 N 1.40582 * 126.08371 * 179.84196 * 11 10 9 13 13 C 1.34773 * 119.99876 * 179.71577 * 12 11 10 14 14 O 1.21708 * 120.00462 * 0.02562 * 13 12 11 15 15 C 1.46769 * 119.99526 * 180.02562 * 13 12 11 16 16 C 1.41521 * 126.51228 * 359.97372 * 15 13 12 17 17 N 1.30304 * 108.26387 * 180.02562 * 16 15 13 18 18 N 1.39898 * 109.24881 * 0.02562 * 17 16 15 19 19 C 1.39727 * 125.77872 * 179.97438 * 18 17 16 20 20 C 1.38977 * 119.68831 * 335.02465 * 19 18 17 21 21 C 1.38400 * 119.10226 * 180.25851 * 20 19 18 22 22 C 1.38805 * 118.48864 * 359.47761 * 21 20 19 23 23 C 1.38112 * 119.29783 * 0.49761 * 22 21 20 24 24 N 1.31904 * 120.84358 * 359.77200 * 23 22 21 25 25 C 1.35254 * 108.44454 * 0.24245 * 18 17 16 26 26 N 1.37949 * 126.46924 * 179.75677 * 25 18 17 27 27 C 1.40658 * 107.83660 * 359.58078 * 11 10 9 28 28 N 1.30918 * 108.38561 * 0.25845 * 27 11 10 29 29 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24694 * 0.02742 * 10 9 7 31 31 H 0.97003 * 119.99632 * 359.71899 * 12 11 10 32 32 H 1.08000 * 125.86842 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.44460 * 359.97438 * 20 19 18 34 34 H 1.08004 * 120.75128 * 179.72396 * 21 20 19 35 35 H 1.08002 * 120.35076 * 180.24665 * 22 21 20 36 36 H 1.08007 * 119.57967 * 179.74113 * 23 22 21 37 37 H 0.97002 * 119.99862 * 359.97438 * 26 25 18 38 38 H 0.96997 * 119.99718 * 179.97438 * 26 25 18 39 39 H 1.07999 * 125.80849 * 180.22659 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6176 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4444 2.6526 0.7001 6 1 3.5445 1.4401 0.7000 7 6 2.0079 -1.2037 -0.0005 8 1 3.0878 -1.2037 -0.0010 9 7 1.3213 -2.3929 -0.0016 10 6 1.8749 -3.6406 0.0032 11 6 0.8578 -4.5386 -0.0034 12 7 0.9889 -5.9382 -0.0046 13 6 -0.1103 -6.7180 -0.0057 14 8 -1.2165 -6.2106 -0.0061 15 6 0.0267 -8.1793 -0.0065 16 6 1.2378 -8.9115 -0.0066 17 7 0.9471 -10.1817 -0.0079 18 7 -0.4433 -10.3366 -0.0091 19 6 -1.1297 -11.5537 -0.0112 20 6 -0.5141 -12.6902 -0.5219 21 6 -1.2071 -13.8882 -0.5228 22 6 -2.4930 -13.9097 -0.0006 23 6 -3.0424 -12.7418 0.4910 24 7 -2.3594 -11.6134 0.4736 25 6 -1.0106 -9.1088 -0.0141 26 7 -2.3616 -8.8298 -0.0215 27 6 -0.3514 -3.8199 -0.0027 28 7 -0.0716 -2.5410 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 2.9301 -3.8710 0.0089 31 1 1.8706 -6.3427 -0.0046 32 1 2.2321 -8.4899 -0.0059 33 1 0.4898 -12.6382 -0.9168 34 1 -0.7560 -14.7868 -0.9173 35 1 -3.0595 -14.8290 0.0172 36 1 -4.0442 -12.7524 0.8946 37 1 -3.0065 -9.5545 -0.0240 38 1 -2.6666 -7.9091 -0.0242 39 1 -1.3420 -4.2499 -0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815152497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:44 Heat of formation + Delta-G solvation = 179.187098 kcal Electronic energy + Delta-G solvation = -27211.709395 eV Core-core repulsion = 23158.631073 eV Total energy + Delta-G solvation = -4053.078323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85110 -40.29747 -39.59892 -38.08646 -35.10922 -33.97167 -33.70716 -33.05021 -32.85692 -30.24878 -29.85606 -28.95864 -27.43592 -25.03049 -24.27773 -24.21146 -22.39270 -21.35300 -20.82390 -19.86316 -19.29680 -18.71835 -17.37894 -17.10450 -16.63925 -16.52728 -15.98531 -15.77125 -15.41699 -15.36227 -14.99324 -14.62106 -14.39074 -14.02133 -13.81668 -13.67305 -13.33717 -13.27511 -12.95650 -12.75574 -12.48288 -11.61046 -11.35724 -11.34814 -11.21248 -11.06191 -10.84212 -10.68536 -10.48639 -10.37549 -10.13940 -10.02177 -9.09649 -9.07530 -8.72248 -8.70721 -7.97901 -7.86890 -6.55286 -6.48219 -4.13822 0.36996 0.68928 1.72002 1.93465 2.21747 3.00893 3.09541 3.14376 3.24259 3.54550 3.65044 3.75850 3.89860 3.98449 4.07137 4.22384 4.41620 4.52950 4.60924 4.64961 4.77975 4.95839 5.08673 5.09842 5.21349 5.25523 5.49964 5.65474 5.71967 5.90232 6.29235 6.34837 6.52841 6.61414 7.01118 7.08582 7.09421 7.22181 7.28328 7.36983 7.42203 7.82576 7.95174 8.33295 8.43912 8.74627 9.06089 9.47642 9.77391 10.48011 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.043704 B = 0.001965 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.524640 B =14245.877716 C =14835.328348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.045 3.955 3 Si 0.933 3.067 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.115 0.885 9 N -0.146 5.146 10 C -0.085 4.085 11 C -0.052 4.052 12 N -0.621 5.621 13 C 0.592 3.408 14 O -0.560 6.560 15 C -0.362 4.362 16 C 0.132 3.868 17 N -0.306 5.306 18 N -0.354 5.354 19 C 0.377 3.623 20 C -0.160 4.160 21 C -0.051 4.051 22 C -0.189 4.189 23 C 0.133 3.867 24 N -0.517 5.517 25 C 0.456 3.544 26 N -0.812 5.812 27 C -0.034 4.034 28 N -0.261 5.261 29 H 0.273 0.727 30 H 0.145 0.855 31 H 0.395 0.605 32 H 0.197 0.803 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.167 0.833 37 H 0.409 0.591 38 H 0.432 0.568 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 -26.373 -0.945 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.171 4.171 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.455 4.455 8 H 0.133 0.867 9 N 0.086 4.914 10 C -0.235 4.235 11 C -0.157 4.157 12 N -0.262 5.262 13 C 0.381 3.619 14 O -0.441 6.441 15 C -0.383 4.383 16 C -0.058 4.058 17 N -0.123 5.123 18 N -0.137 5.137 19 C 0.150 3.850 20 C -0.182 4.182 21 C -0.077 4.077 22 C -0.210 4.210 23 C -0.024 4.024 24 N -0.231 5.231 25 C 0.223 3.777 26 N -0.360 5.360 27 C -0.210 4.210 28 N -0.092 5.092 29 H 0.084 0.916 30 H 0.163 0.837 31 H 0.228 0.772 32 H 0.214 0.786 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.241 0.759 38 H 0.269 0.731 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.122 -25.077 -0.614 25.278 hybrid contribution 1.008 -0.313 -0.242 1.083 sum -2.114 -25.390 -0.856 25.492 Atomic orbital electron populations 1.70221 1.06082 1.27799 1.35780 1.25623 0.95688 1.00188 0.95620 0.85850 0.79389 0.80126 0.78890 1.19669 1.20168 1.18858 1.19835 0.91603 0.80605 1.53464 0.86721 1.44516 1.04019 1.03249 1.39580 1.21256 0.96825 0.85398 1.20065 1.17253 0.94242 0.81266 1.22968 1.42149 1.07884 1.04202 1.71952 1.16636 0.84238 0.83919 0.77099 1.90573 1.25777 1.74512 1.53204 1.19360 0.91086 0.93440 1.34364 1.23998 0.98982 0.89861 0.92947 1.77237 0.85701 1.19022 1.30353 1.45257 1.05216 1.01273 1.61992 1.17750 0.89006 0.83936 0.94298 1.21681 1.02694 0.91741 1.02095 1.21566 0.93799 0.97580 0.94786 1.22155 0.96747 1.00221 1.01841 1.22552 0.98963 0.86379 0.94531 1.66809 1.07453 1.31164 1.17717 1.18161 0.86088 0.84555 0.88882 1.42143 1.01246 1.13557 1.79075 1.24115 0.98112 0.90646 1.08098 1.78236 0.90165 1.15175 1.25666 0.91594 0.83748 0.77223 0.78613 0.83330 0.83798 0.84004 0.81557 0.75881 0.73125 0.80691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.93 11.81 55.49 0.66 -21.27 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.25 29.55 -169.99 -5.02 14.23 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.32 -8.68 10.25 -14.81 -0.15 -8.83 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 9 N -0.15 -4.06 3.74 -11.41 -0.04 -4.10 16 10 C -0.08 -2.02 11.49 -16.39 -0.19 -2.21 16 11 C -0.05 -1.22 6.90 -83.84 -0.58 -1.79 16 12 N -0.62 -11.46 5.46 -11.14 -0.06 -11.52 16 13 C 0.59 11.06 7.76 -12.81 -0.10 10.97 16 14 O -0.56 -12.01 12.29 5.18 0.06 -11.94 16 15 C -0.36 -5.58 6.15 -104.81 -0.64 -6.23 16 16 C 0.13 1.65 11.49 -16.95 -0.19 1.46 16 17 N -0.31 -4.03 11.97 30.89 0.37 -3.66 16 18 N -0.35 -4.79 3.75 -11.06 -0.04 -4.83 16 19 C 0.38 4.33 7.37 -154.43 -1.14 3.20 16 20 C -0.16 -1.41 9.73 -39.25 -0.38 -1.79 16 21 C -0.05 -0.30 10.17 -39.31 -0.40 -0.70 16 22 C -0.19 -0.96 10.11 -39.42 -0.40 -1.36 16 23 C 0.13 0.89 11.18 -17.57 -0.20 0.69 16 24 N -0.52 -5.29 8.10 -12.30 -0.10 -5.39 16 25 C 0.46 6.72 7.87 -153.48 -1.21 5.51 16 26 N -0.81 -10.68 8.95 31.46 0.28 -10.40 16 27 C -0.03 -0.91 10.85 -17.03 -0.18 -1.10 16 28 N -0.26 -7.72 10.40 30.80 0.32 -7.40 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.15 2.87 8.06 -52.48 -0.42 2.44 16 31 H 0.39 5.60 7.77 -40.82 -0.32 5.29 16 32 H 0.20 1.65 7.49 -52.49 -0.39 1.26 16 33 H 0.15 1.26 7.89 -52.49 -0.41 0.84 16 34 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 35 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 36 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.41 4.61 6.86 -40.82 -0.28 4.33 16 38 H 0.43 6.07 7.01 -40.82 -0.29 5.79 16 39 H 0.18 4.62 5.91 -52.49 -0.31 4.31 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -36.46 345.45 -7.47 -43.93 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -3.24 Total: 18.24 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -5.86 Total: -1.09 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: 1.38 Total: -68.57 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.06 Total: -11.94 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.46 -7.47 -43.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815152497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.114 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds