Wall clock time and date at job start Tue Mar 31 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86793 * 120.00203 * 2 1 4 4 H 1.48499 * 109.47458 * 270.00305 * 3 2 1 5 5 H 1.48509 * 109.46808 * 30.00111 * 3 2 1 6 6 H 1.48501 * 109.47364 * 149.99947 * 3 2 1 7 7 C 1.38988 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.37322 * 120.00125 * 0.02562 * 7 2 1 10 10 C 1.36504 * 126.07133 * 180.28219 * 9 7 2 11 11 C 1.35681 * 107.50710 * 180.15483 * 10 9 7 12 12 N 1.40582 * 126.08371 * 179.84196 * 11 10 9 13 13 C 1.34773 * 119.99876 * 179.71577 * 12 11 10 14 14 O 1.21708 * 120.00462 * 0.02562 * 13 12 11 15 15 C 1.46769 * 119.99526 * 180.02562 * 13 12 11 16 16 C 1.41521 * 126.51228 * 359.97372 * 15 13 12 17 17 N 1.30304 * 108.26387 * 180.02562 * 16 15 13 18 18 N 1.39898 * 109.24881 * 0.02562 * 17 16 15 19 19 C 1.39727 * 125.77872 * 179.97438 * 18 17 16 20 20 C 1.38977 * 119.68831 * 335.02465 * 19 18 17 21 21 C 1.38400 * 119.10226 * 180.25851 * 20 19 18 22 22 C 1.38805 * 118.48864 * 359.47761 * 21 20 19 23 23 C 1.38112 * 119.29783 * 0.49761 * 22 21 20 24 24 N 1.31904 * 120.84358 * 359.77200 * 23 22 21 25 25 C 1.35254 * 108.44454 * 0.24245 * 18 17 16 26 26 N 1.37949 * 126.46924 * 179.75677 * 25 18 17 27 27 C 1.40658 * 107.83660 * 359.58078 * 11 10 9 28 28 N 1.30918 * 108.38561 * 0.25845 * 27 11 10 29 29 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24694 * 0.02742 * 10 9 7 31 31 H 0.97003 * 119.99632 * 359.71899 * 12 11 10 32 32 H 1.08000 * 125.86842 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.44460 * 359.97438 * 20 19 18 34 34 H 1.08004 * 120.75128 * 179.72396 * 21 20 19 35 35 H 1.08002 * 120.35076 * 180.24665 * 22 21 20 36 36 H 1.08007 * 119.57967 * 179.74113 * 23 22 21 37 37 H 0.97002 * 119.99862 * 359.97438 * 26 25 18 38 38 H 0.96997 * 119.99718 * 179.97438 * 26 25 18 39 39 H 1.07999 * 125.80849 * 180.22659 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6176 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4444 2.6526 0.7001 6 1 3.5445 1.4401 0.7000 7 6 2.0079 -1.2037 -0.0005 8 1 3.0878 -1.2037 -0.0010 9 7 1.3213 -2.3929 -0.0016 10 6 1.8749 -3.6406 0.0032 11 6 0.8578 -4.5386 -0.0034 12 7 0.9889 -5.9382 -0.0046 13 6 -0.1103 -6.7180 -0.0057 14 8 -1.2165 -6.2106 -0.0061 15 6 0.0267 -8.1793 -0.0065 16 6 1.2378 -8.9115 -0.0066 17 7 0.9471 -10.1817 -0.0079 18 7 -0.4433 -10.3366 -0.0091 19 6 -1.1297 -11.5537 -0.0112 20 6 -0.5141 -12.6902 -0.5219 21 6 -1.2071 -13.8882 -0.5228 22 6 -2.4930 -13.9097 -0.0006 23 6 -3.0424 -12.7418 0.4910 24 7 -2.3594 -11.6134 0.4736 25 6 -1.0106 -9.1088 -0.0141 26 7 -2.3616 -8.8298 -0.0215 27 6 -0.3514 -3.8199 -0.0027 28 7 -0.0716 -2.5410 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 2.9301 -3.8710 0.0089 31 1 1.8706 -6.3427 -0.0046 32 1 2.2321 -8.4899 -0.0059 33 1 0.4898 -12.6382 -0.9168 34 1 -0.7560 -14.7868 -0.9173 35 1 -3.0595 -14.8290 0.0172 36 1 -4.0442 -12.7524 0.8946 37 1 -3.0065 -9.5545 -0.0240 38 1 -2.6666 -7.9091 -0.0242 39 1 -1.3420 -4.2499 -0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815152497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:43 Heat of formation + Delta-G solvation = 153.595107 kcal Electronic energy + Delta-G solvation = -27212.819147 eV Core-core repulsion = 23158.631073 eV Total energy + Delta-G solvation = -4054.188075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.80329 -41.55678 -40.91733 -39.66484 -36.23611 -35.63053 -34.84353 -34.49410 -33.50165 -32.19413 -30.78871 -30.17651 -29.11795 -26.80558 -25.23081 -24.88812 -23.56776 -22.72607 -22.25199 -21.26136 -21.03788 -19.78746 -19.09462 -17.94579 -17.71051 -17.39023 -17.30683 -17.03792 -16.73288 -16.50696 -16.24224 -15.80240 -15.68054 -15.35786 -15.01022 -14.84738 -14.68537 -14.56688 -14.24451 -14.12082 -13.43884 -13.22131 -12.97427 -12.87808 -12.80765 -12.39092 -12.11475 -12.06308 -11.76879 -11.39630 -10.98846 -10.94581 -10.78737 -10.74921 -10.60572 -10.02899 -9.49987 -9.03964 -8.42126 -8.37408 -6.17714 -0.30182 0.17060 0.79635 0.90386 1.16339 1.36411 1.42029 1.59664 1.81102 2.12215 2.26999 2.43788 2.58071 2.75463 2.83941 3.01334 3.14450 3.27040 3.50775 3.91268 3.96274 4.02478 4.12186 4.21708 4.31207 4.50015 4.58269 4.70807 4.73141 4.97418 5.06597 5.17135 5.19708 5.28077 5.35883 5.43570 5.57902 5.75935 6.02263 6.13898 6.31136 6.40611 6.58262 6.80449 6.85034 6.96145 7.51423 7.56894 7.76660 8.57552 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.043704 B = 0.001965 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.524640 B =14245.877716 C =14835.328348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.019 2.981 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.171 5.171 10 C -0.081 4.081 11 C -0.037 4.037 12 N -0.612 5.612 13 C 0.591 3.409 14 O -0.594 6.594 15 C -0.384 4.384 16 C 0.141 3.859 17 N -0.309 5.309 18 N -0.355 5.355 19 C 0.332 3.668 20 C -0.167 4.167 21 C -0.047 4.047 22 C -0.169 4.169 23 C 0.121 3.879 24 N -0.541 5.541 25 C 0.446 3.554 26 N -0.806 5.806 27 C -0.060 4.060 28 N -0.311 5.311 29 H 0.275 0.725 30 H 0.189 0.811 31 H 0.418 0.582 32 H 0.235 0.765 33 H 0.146 0.854 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.195 0.805 37 H 0.416 0.584 38 H 0.426 0.574 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 -29.157 -1.015 29.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.484 4.484 8 H 0.158 0.842 9 N 0.059 4.941 10 C -0.231 4.231 11 C -0.143 4.143 12 N -0.256 5.256 13 C 0.382 3.618 14 O -0.476 6.476 15 C -0.404 4.404 16 C -0.050 4.050 17 N -0.126 5.126 18 N -0.138 5.138 19 C 0.107 3.893 20 C -0.190 4.190 21 C -0.073 4.073 22 C -0.189 4.189 23 C -0.036 4.036 24 N -0.256 5.256 25 C 0.211 3.789 26 N -0.355 5.355 27 C -0.236 4.236 28 N -0.143 5.143 29 H 0.084 0.916 30 H 0.206 0.794 31 H 0.255 0.745 32 H 0.251 0.749 33 H 0.164 0.836 34 H 0.196 0.804 35 H 0.199 0.801 36 H 0.212 0.788 37 H 0.250 0.750 38 H 0.262 0.738 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.314 -27.966 -0.684 28.005 hybrid contribution 0.316 0.180 -0.216 0.423 sum -0.998 -27.786 -0.900 27.819 Atomic orbital electron populations 1.70409 1.08406 1.28915 1.37807 1.26876 0.96482 1.04329 0.94296 0.84599 0.78300 0.74157 0.79169 1.18949 1.20328 1.16699 1.20590 0.92928 0.80926 1.53993 0.84210 1.44812 1.03602 1.04771 1.40882 1.21995 0.98831 0.84153 1.18092 1.17316 0.92844 0.83545 1.20560 1.42014 1.09325 1.02074 1.72152 1.17127 0.83615 0.85229 0.75827 1.90555 1.27159 1.75458 1.54462 1.19127 0.92890 0.91590 1.36784 1.24526 0.99589 0.89110 0.91766 1.77171 0.86062 1.19336 1.30080 1.45405 1.05172 1.01579 1.61654 1.18086 0.90130 0.83850 0.97239 1.21825 1.02897 0.92135 1.02094 1.22016 0.93930 0.97486 0.93833 1.22629 0.96360 1.00943 0.98974 1.23199 0.99935 0.86098 0.94367 1.66751 1.07366 1.33084 1.18354 1.18359 0.86393 0.85419 0.88741 1.42105 1.01213 1.13467 1.78695 1.24188 0.99153 0.90822 1.09396 1.78131 0.92088 1.16643 1.27439 0.91553 0.79400 0.74511 0.74904 0.83585 0.80403 0.80133 0.78830 0.74995 0.73810 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.81 11.81 21.66 0.26 -48.56 16 2 C -0.01 -0.47 5.50 84.95 0.47 0.00 16 3 Si 1.02 39.44 29.55 68.60 2.03 41.47 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.24 -8.54 7.11 99.48 0.71 -7.83 16 7 C -0.35 -19.07 10.25 84.01 0.86 -18.21 16 8 H 0.14 6.52 7.83 -2.91 -0.02 6.50 16 9 N -0.17 -9.71 3.74 -190.01 -0.71 -10.42 16 10 C -0.08 -3.80 11.49 83.37 0.96 -2.84 16 11 C -0.04 -1.73 6.90 37.73 0.26 -1.46 16 12 N -0.61 -22.19 5.46 -307.39 -1.68 -23.87 16 13 C 0.59 22.36 7.76 86.47 0.67 23.03 16 14 O -0.59 -26.56 12.29 -4.37 -0.05 -26.61 16 15 C -0.38 -11.81 6.15 -19.99 -0.12 -11.93 16 16 C 0.14 3.33 11.49 85.73 0.99 4.32 16 17 N -0.31 -7.89 11.97 -56.19 -0.67 -8.56 16 18 N -0.35 -9.54 3.75 -188.92 -0.71 -10.25 16 19 C 0.33 7.44 7.37 132.80 0.98 8.42 16 20 C -0.17 -2.71 9.73 22.49 0.22 -2.50 16 21 C -0.05 -0.39 10.17 22.44 0.23 -0.16 16 22 C -0.17 -1.07 10.11 22.38 0.23 -0.84 16 23 C 0.12 1.33 11.18 84.65 0.95 2.28 16 24 N -0.54 -10.65 8.10 -192.83 -1.56 -12.21 16 25 C 0.45 13.35 7.87 132.58 1.04 14.39 16 26 N -0.81 -22.07 8.95 -54.38 -0.49 -22.56 16 27 C -0.06 -3.37 10.85 85.42 0.93 -2.44 16 28 N -0.31 -19.19 10.40 -56.46 -0.59 -19.78 16 29 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.19 6.92 8.06 -2.91 -0.02 6.90 16 31 H 0.42 10.99 7.77 -92.71 -0.72 10.27 16 32 H 0.23 3.28 7.49 -2.91 -0.02 3.26 16 33 H 0.15 2.33 7.89 -2.91 -0.02 2.31 16 34 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 35 H 0.18 -0.24 8.06 -2.91 -0.02 -0.26 16 36 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.42 9.70 6.86 -92.71 -0.64 9.06 16 38 H 0.43 12.74 7.01 -92.71 -0.65 12.09 16 39 H 0.17 9.44 5.91 -2.91 -0.02 9.42 16 Total: -1.00 -85.18 345.45 3.64 -81.54 By element: Atomic # 1 Polarization: 48.59 SS G_CDS: -0.83 Total: 47.76 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 8.65 Total: 12.05 kcal Atomic # 7 Polarization: -150.06 SS G_CDS: -6.15 Total: -156.21 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -85.18 3.64 -81.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815152497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.130 kcal (2) G-P(sol) polarization free energy of solvation -85.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds