Wall clock time and date at job start Tue Mar 31 2020 22:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86800 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47048 * 274.97825 * 3 2 1 5 5 H 1.48509 * 109.47138 * 34.97324 * 3 2 1 6 6 H 1.48497 * 109.47718 * 154.97709 * 3 2 1 7 7 C 1.38982 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00810 * 185.94142 * 7 2 1 9 9 N 1.37327 * 119.99795 * 5.94032 * 7 2 1 10 10 C 1.36485 * 126.07151 * 174.13038 * 9 7 2 11 11 C 1.35685 * 107.51341 * 180.02562 * 10 9 7 12 12 N 1.40587 * 126.08585 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00261 * 179.97438 * 12 11 10 14 14 O 1.21310 * 119.99756 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00541 * 179.97438 * 13 12 11 16 16 C 1.50697 * 109.47422 * 180.02562 * 15 13 12 17 17 C 1.38336 * 119.94033 * 270.02253 * 16 15 13 18 18 C 1.38292 * 120.24202 * 179.97438 * 17 16 15 19 19 C 1.38051 * 120.11336 * 0.02562 * 18 17 16 20 20 C 1.39284 * 119.88063 * 359.97438 * 19 18 17 21 21 C 1.48464 * 120.11830 * 180.02562 * 20 19 18 22 22 N 1.34041 * 126.67819 * 179.69018 * 21 20 19 23 23 N 1.28988 * 107.26925 * 179.83191 * 22 21 20 24 24 N 1.28721 * 108.94269 * 0.43474 * 23 22 21 25 25 H 0.97009 * 125.33868 * 179.74289 * 24 23 22 26 26 N 1.28872 * 109.31967 * 359.72347 * 24 23 22 27 27 C 1.38006 * 119.94216 * 90.00150 * 16 15 13 28 28 C 1.40649 * 107.82852 * 0.26265 * 11 10 9 29 29 N 1.30904 * 108.39023 * 359.55497 * 28 11 10 30 30 H 0.97005 * 120.00166 * 0.02562 * 1 2 3 31 31 H 1.08002 * 126.24356 * 0.04127 * 10 9 7 32 32 H 0.97005 * 120.00242 * 359.97438 * 12 11 10 33 33 H 1.08999 * 109.47285 * 59.99588 * 15 13 12 34 34 H 1.08998 * 109.46996 * 299.99763 * 15 13 12 35 35 H 1.08007 * 119.87758 * 359.97438 * 17 16 15 36 36 H 1.07999 * 119.94829 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.05995 * 180.27528 * 19 18 17 38 38 H 1.07995 * 120.06080 * 359.97438 * 27 16 15 39 39 H 1.08008 * 125.79981 * 179.70248 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5009 2.6201 0.8026 6 1 3.5931 1.4122 0.5922 7 6 2.0079 -1.2036 0.0005 8 1 3.0835 -1.2061 0.0973 9 7 1.3268 -2.3897 -0.1220 10 6 1.8862 -3.6282 -0.2489 11 6 0.8733 -4.5261 -0.3427 12 7 1.0111 -5.9179 -0.4854 13 6 -0.0844 -6.6987 -0.5667 14 8 -1.1894 -6.2006 -0.5163 15 6 0.0632 -8.1906 -0.7203 16 6 -1.3015 -8.8262 -0.7875 17 6 -1.9285 -9.2398 0.3741 18 6 -3.1811 -9.8234 0.3197 19 6 -3.8123 -9.9965 -0.8958 20 6 -3.1856 -9.5818 -2.0685 21 6 -3.8598 -9.7649 -3.3784 22 7 -3.3834 -9.4115 -4.5804 23 7 -4.2693 -9.7451 -5.4566 24 7 -5.2733 -10.2790 -4.8534 25 1 -6.0753 -10.6122 -5.2857 26 7 -5.0459 -10.3016 -3.5851 27 6 -1.9238 -8.9941 -2.0079 28 6 -0.3390 -3.8161 -0.2772 29 7 -0.0653 -2.5434 -0.1396 30 1 -0.4850 0.8401 -0.0004 31 1 2.9425 -3.8526 -0.2705 32 1 1.8946 -6.3163 -0.5253 33 1 0.6095 -8.5915 0.1335 34 1 0.6108 -8.4090 -1.6371 35 1 -1.4379 -9.1066 1.3271 36 1 -3.6664 -10.1442 1.2296 37 1 -4.7924 -10.4483 -0.9369 38 1 -1.4338 -8.6702 -2.9141 39 1 -1.3277 -4.2478 -0.3290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822815360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:55 Heat of formation + Delta-G solvation = 173.111138 kcal Electronic energy + Delta-G solvation = -26908.742137 eV Core-core repulsion = 22855.400341 eV Total energy + Delta-G solvation = -4053.341796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.48080 -41.67411 -40.67854 -39.56643 -35.87328 -35.48725 -34.90548 -34.83288 -33.45585 -32.18882 -31.57591 -29.97814 -28.37860 -26.61052 -25.71974 -25.50500 -23.22509 -22.86347 -22.51006 -21.33584 -21.06146 -20.16920 -19.27587 -18.16505 -17.94722 -17.52897 -17.33911 -16.88636 -16.58870 -16.45160 -15.77165 -15.67565 -15.22926 -14.92378 -14.84365 -14.75839 -14.52951 -14.02483 -13.70097 -13.46603 -13.41570 -13.24400 -13.00786 -12.82862 -12.77143 -12.42698 -12.40533 -12.16925 -12.05749 -11.93720 -11.89129 -11.75538 -10.97813 -10.78600 -10.61329 -10.06371 -9.74176 -9.55718 -8.46821 -8.44457 -6.21357 -0.25988 0.16974 0.42728 1.26536 1.32498 1.40554 1.41360 1.58624 1.60147 1.92769 2.10009 2.39223 2.59554 2.66706 2.86312 3.07074 3.10636 3.15539 3.73526 3.99745 4.12834 4.18267 4.24017 4.39080 4.41937 4.48643 4.55489 4.67244 4.68875 4.75578 4.97817 5.03894 5.09535 5.17211 5.33680 5.44856 5.49684 5.57112 5.60684 5.62943 5.99228 5.99814 6.37428 6.77790 6.88202 7.09383 7.49043 7.55698 7.73953 8.54651 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.002124 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.885945 B =13177.873340 C =13991.335586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.241 1.241 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.171 5.171 10 C -0.081 4.081 11 C -0.040 4.040 12 N -0.619 5.619 13 C 0.496 3.504 14 O -0.575 6.575 15 C -0.085 4.085 16 C -0.076 4.076 17 C -0.087 4.087 18 C -0.121 4.121 19 C -0.083 4.083 20 C -0.041 4.041 21 C 0.212 3.788 22 N -0.300 5.300 23 N -0.059 5.059 24 N -0.200 5.200 25 H 0.495 0.505 26 N -0.294 5.294 27 C -0.075 4.075 28 C -0.062 4.062 29 N -0.314 5.314 30 H 0.275 0.725 31 H 0.189 0.811 32 H 0.422 0.578 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.125 0.875 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 -23.960 -3.131 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.164 1.164 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.059 4.941 10 C -0.231 4.231 11 C -0.146 4.146 12 N -0.264 5.264 13 C 0.285 3.715 14 O -0.454 6.454 15 C -0.124 4.124 16 C -0.076 4.076 17 C -0.106 4.106 18 C -0.139 4.139 19 C -0.104 4.104 20 C -0.045 4.045 21 C -0.068 4.068 22 N -0.172 5.172 23 N -0.054 5.054 24 N -0.051 5.051 25 H 0.354 0.646 26 N -0.147 5.147 27 C -0.095 4.095 28 C -0.237 4.237 29 N -0.146 5.146 30 H 0.085 0.915 31 H 0.206 0.794 32 H 0.259 0.741 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.143 0.857 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.129 -22.287 -3.663 22.960 hybrid contribution 0.054 -0.214 -0.190 0.291 sum -4.075 -22.501 -3.853 23.189 Atomic orbital electron populations 1.70415 1.08492 1.28966 1.37667 1.26890 0.96440 1.04396 0.94220 0.84585 0.78586 0.74209 0.78852 1.19301 1.20237 1.16391 1.20599 0.93379 0.81061 1.53467 0.84169 1.44832 1.03525 1.05283 1.40435 1.22040 0.98877 0.84579 1.17581 1.17353 0.92472 0.84609 1.20166 1.42511 1.10119 1.02723 1.71091 1.21336 0.83511 0.90266 0.76396 1.90624 1.27520 1.76214 1.51085 1.20679 0.95805 0.87676 1.08247 1.19378 0.96553 0.98739 0.92948 1.21529 0.95335 0.95397 0.98341 1.21372 0.95019 0.99308 0.98173 1.21327 1.00124 0.97940 0.90969 1.17346 0.94924 1.05039 0.87161 1.23904 0.89617 0.98297 0.94942 1.76096 1.22517 1.20197 0.98402 1.78847 0.93776 1.10267 1.22471 1.47778 1.17758 1.37418 1.02129 0.64623 1.74863 1.17752 1.22699 0.99344 1.21053 0.93626 0.96326 0.98535 1.24143 0.99079 0.91141 1.09368 1.78130 0.92355 1.16798 1.27326 0.91532 0.79402 0.74077 0.83955 0.85164 0.83642 0.82455 0.83847 0.85677 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.80 11.84 21.66 0.26 -48.54 16 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 3 Si 1.02 39.23 29.56 68.60 2.03 41.25 16 4 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.24 -8.29 7.11 99.48 0.71 -7.58 16 7 C -0.35 -18.97 10.24 84.01 0.86 -18.11 16 8 H 0.14 6.48 7.84 -2.91 -0.02 6.46 16 9 N -0.17 -9.63 3.74 -190.02 -0.71 -10.34 16 10 C -0.08 -3.71 11.49 83.38 0.96 -2.76 16 11 C -0.04 -1.81 6.90 37.73 0.26 -1.55 16 12 N -0.62 -19.95 5.47 -303.93 -1.66 -21.61 16 13 C 0.50 15.80 7.79 87.66 0.68 16.48 16 14 O -0.58 -24.66 13.19 -3.12 -0.04 -24.70 16 15 C -0.08 -1.60 5.83 29.10 0.17 -1.43 16 16 C -0.08 -1.70 4.37 -19.90 -0.09 -1.79 16 17 C -0.09 -1.72 9.69 22.31 0.22 -1.50 16 18 C -0.12 -2.17 10.03 22.24 0.22 -1.94 16 19 C -0.08 -1.69 9.70 22.48 0.22 -1.48 16 20 C -0.04 -1.02 5.88 -20.04 -0.12 -1.14 16 21 C 0.21 5.37 7.94 137.38 1.09 6.46 16 22 N -0.30 -8.23 12.23 -52.18 -0.64 -8.87 16 23 N -0.06 -1.30 13.47 37.02 0.50 -0.80 16 24 N -0.20 -3.03 7.90 37.02 0.29 -2.73 16 25 H 0.49 2.10 8.96 -347.53 -3.12 -1.01 16 26 N -0.29 -5.97 12.08 -52.13 -0.63 -6.60 16 27 C -0.08 -1.90 9.35 22.48 0.21 -1.69 16 28 C -0.06 -3.44 10.85 85.42 0.93 -2.51 16 29 N -0.31 -19.34 10.42 -56.46 -0.59 -19.92 16 30 H 0.28 14.93 8.31 -92.70 -0.77 14.16 16 31 H 0.19 6.73 8.06 -2.91 -0.02 6.70 16 32 H 0.42 9.22 8.83 -92.70 -0.82 8.40 16 33 H 0.14 1.59 8.09 -2.39 -0.02 1.57 16 34 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.14 2.40 7.88 -2.91 -0.02 2.38 16 38 H 0.13 3.26 7.89 -2.91 -0.02 3.24 16 39 H 0.16 9.26 5.92 -2.91 -0.02 9.24 16 Total: -1.00 -87.77 352.73 2.11 -85.66 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -2.78 Total: 30.13 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 6.08 Total: -12.93 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -3.18 Total: -119.42 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.70 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.25 kcal Total: -87.77 2.11 -85.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822815360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.771 kcal (2) G-P(sol) polarization free energy of solvation -87.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds