Wall clock time and date at job start Tue Mar 31 2020 22:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37697 * 120.02124 * 2 1 4 4 C 1.39437 * 120.03606 * 180.02562 * 3 2 1 5 5 C 1.48360 * 119.97735 * 179.97438 * 4 3 2 6 6 N 1.34086 * 126.67723 * 359.68312 * 5 4 3 7 7 N 1.28986 * 107.26295 * 179.83762 * 6 5 4 8 8 N 1.28729 * 108.95493 * 0.43460 * 7 6 5 9 9 H 0.96999 * 125.33606 * 179.76390 * 8 7 6 10 10 N 1.28866 * 109.33044 * 359.72458 * 8 7 6 11 11 C 1.39492 * 120.05195 * 359.97438 * 4 3 2 12 12 C 1.37661 * 120.03045 * 359.72399 * 11 4 3 13 13 C 1.39691 * 120.01257 * 179.97438 * 2 1 3 14 14 C 1.47717 * 120.02807 * 0.02562 * 13 2 1 15 15 O 1.21594 * 119.99830 * 353.98866 * 14 13 2 16 16 N 1.34769 * 119.99886 * 173.98613 * 14 13 2 17 17 C 1.40520 * 120.00010 * 180.02562 * 16 14 13 18 18 C 1.40666 * 126.08303 * 0.02562 * 17 16 14 19 19 N 1.30908 * 108.38901 * 179.73854 * 18 17 16 20 20 N 1.40071 * 108.41006 * 0.02562 * 19 18 17 21 21 C 1.37318 * 126.06840 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00138 * 179.97438 * 21 20 19 23 23 C 1.38994 * 119.99721 * 359.97160 * 21 20 19 24 24 N 1.31294 * 120.00204 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99773 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47132 * 60.00084 * 25 23 21 27 27 H 1.48502 * 109.47067 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47007 * 300.00039 * 25 23 21 29 29 C 1.35699 * 126.08692 * 179.71600 * 17 16 14 30 30 H 1.09001 * 109.47261 * 263.39522 * 1 2 3 31 31 H 1.09003 * 109.46775 * 23.38975 * 1 2 3 32 32 H 1.08999 * 109.47038 * 143.39078 * 1 2 3 33 33 H 1.07999 * 119.98170 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.98195 * 180.02562 * 11 4 3 35 35 H 1.07997 * 120.01148 * 180.27488 * 12 11 4 36 36 H 0.97001 * 120.00071 * 0.02562 * 16 14 13 37 37 H 1.08000 * 125.81373 * 359.72413 * 18 17 16 38 38 H 0.96993 * 119.99811 * 179.97438 * 24 23 21 39 39 H 1.08001 * 126.24974 * 0.24655 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1922 0.0000 4 6 3.5903 1.1926 -0.0005 5 6 4.3313 2.4779 -0.0011 6 7 3.7996 3.7088 -0.0071 7 7 4.7786 4.5487 -0.0018 8 7 5.8887 3.8969 -0.0021 9 1 6.7731 4.2951 -0.0020 10 7 5.6408 2.6323 -0.0017 11 6 4.2892 -0.0146 -0.0005 12 6 3.6029 -1.2080 0.0057 13 6 2.2057 -1.2096 0.0005 14 6 1.4680 -2.4894 0.0005 15 8 0.2571 -2.4931 0.1104 16 7 2.1372 -3.6529 -0.1212 17 6 1.4355 -4.8703 -0.1218 18 6 0.0421 -5.0234 -0.0042 19 7 -0.2384 -6.3012 -0.0516 20 7 0.9595 -7.0118 -0.2000 21 6 1.0843 -8.3764 -0.2893 22 1 2.0609 -8.8231 -0.4032 23 6 -0.0465 -9.1828 -0.2332 24 7 -1.2339 -8.6397 -0.0953 25 14 0.1233 -11.0391 -0.3540 26 1 0.9713 -11.5322 0.7609 27 1 -1.2204 -11.6656 -0.2691 28 1 0.7539 -11.3951 -1.6505 29 6 1.9807 -6.1071 -0.2416 30 1 -0.3634 -0.1182 1.0208 31 1 -0.3633 0.9433 -0.4080 32 1 -0.3633 -0.8249 -0.6128 33 1 1.6560 2.1276 -0.0004 34 1 5.3692 -0.0130 -0.0005 35 1 4.1443 -2.1424 0.0102 36 1 3.1033 -3.6499 -0.2085 37 1 -0.6745 -4.2230 0.1065 38 1 -2.0229 -9.2024 -0.0565 39 1 3.0310 -6.3342 -0.3500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826250439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:31 Heat of formation + Delta-G solvation = 206.174623 kcal Electronic energy + Delta-G solvation = -26996.368438 eV Core-core repulsion = 22944.460382 eV Total energy + Delta-G solvation = -4051.908056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.79111 -40.41963 -39.44449 -38.03166 -34.76286 -34.52542 -34.00591 -33.31187 -32.30694 -31.09179 -30.18865 -27.98025 -26.95593 -25.50756 -24.91466 -24.60643 -22.66161 -21.65892 -21.01921 -20.22713 -19.57937 -19.35003 -17.75160 -17.47908 -17.14913 -16.31726 -15.71754 -15.47693 -15.00090 -14.93723 -14.74355 -14.28515 -14.02161 -13.57639 -13.51942 -13.24678 -12.99887 -12.98408 -12.76632 -12.42309 -12.18780 -11.98787 -11.69776 -11.68115 -11.55736 -11.38915 -11.25378 -11.15491 -11.08907 -10.93316 -10.56369 -10.16787 -9.17940 -9.08092 -9.00602 -8.81611 -8.77855 -8.06828 -6.70376 -6.56554 -4.23330 0.22897 0.81256 1.17568 1.88211 1.89364 2.90334 3.04302 3.06571 3.08538 3.33026 3.53168 3.56367 3.84794 3.86475 3.87376 4.45553 4.63319 4.66532 4.70248 4.87091 5.01486 5.03896 5.05744 5.11415 5.33621 5.45526 5.71339 5.78019 5.95341 5.96894 6.07240 6.13502 6.20044 6.26215 6.45302 6.51729 6.69636 6.90118 6.94683 7.11910 7.23201 7.79395 7.84650 8.14888 8.26337 8.61376 8.82011 9.36485 9.65903 10.39298 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035743 B = 0.001934 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.181642 B =14477.334112 C =15241.285483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.026 4.026 3 C -0.086 4.086 4 C -0.004 4.004 5 C 0.222 3.778 6 N -0.266 5.266 7 N -0.050 5.050 8 N -0.228 5.228 9 H 0.476 0.524 10 N -0.292 5.292 11 C -0.094 4.094 12 C -0.090 4.090 13 C -0.101 4.101 14 C 0.536 3.464 15 O -0.523 6.523 16 N -0.614 5.614 17 C -0.061 4.061 18 C -0.030 4.030 19 N -0.261 5.261 20 N -0.141 5.141 21 C -0.323 4.323 22 H 0.116 0.884 23 C 0.046 3.954 24 N -0.769 5.769 25 Si 0.935 3.065 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.267 1.267 29 C -0.084 4.084 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.396 0.604 37 H 0.178 0.822 38 H 0.276 0.724 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.361 19.426 -0.185 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.027 4.027 3 C -0.106 4.106 4 C -0.007 4.007 5 C -0.058 4.058 6 N -0.139 5.139 7 N -0.045 5.045 8 N -0.074 5.074 9 H 0.330 0.670 10 N -0.144 5.144 11 C -0.114 4.114 12 C -0.109 4.109 13 C -0.105 4.105 14 C 0.323 3.677 15 O -0.402 6.402 16 N -0.256 5.256 17 C -0.166 4.166 18 C -0.206 4.206 19 N -0.092 5.092 20 N 0.091 4.909 21 C -0.455 4.455 22 H 0.133 0.867 23 C -0.171 4.171 24 N -0.395 5.395 25 Si 0.758 3.242 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.192 1.192 29 C -0.235 4.235 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.230 0.770 37 H 0.194 0.806 38 H 0.086 0.914 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.365 19.130 -0.059 22.779 hybrid contribution 2.157 -0.329 -0.099 2.184 sum 14.521 18.801 -0.158 23.757 Atomic orbital electron populations 1.21131 0.89196 1.03324 1.04180 1.19968 0.97416 0.90648 0.94662 1.21032 0.91977 0.98579 0.98992 1.17337 0.92161 0.86784 1.04433 1.23727 0.86323 0.94395 1.01359 1.76122 1.21810 0.98356 1.17577 1.78925 0.88495 1.22402 1.14698 1.47737 1.11550 1.02056 1.46057 0.67020 1.74955 1.17851 0.99605 1.21957 1.20993 1.00395 0.90535 0.99465 1.21235 0.92979 0.98305 0.98356 1.20125 0.93474 0.93854 1.03061 1.17952 0.87294 0.82992 0.79447 1.90633 1.13406 1.86232 1.49902 1.42431 1.09353 1.04083 1.69776 1.17241 0.92202 0.83555 1.23635 1.24143 0.93423 0.95422 1.07567 1.78267 1.03714 1.01895 1.25301 1.44548 1.02828 1.04926 1.38564 1.19829 0.95859 0.77076 1.52752 0.86651 1.25644 0.94591 1.01389 0.95506 1.70201 0.98080 1.36447 1.34801 0.85896 0.78343 0.80450 0.79466 1.19161 1.20120 1.19165 1.21258 0.94083 0.88397 1.19750 0.90331 0.92428 0.87905 0.84155 0.84571 0.84742 0.77002 0.80574 0.91374 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 8.72 36.01 0.31 -1.24 16 2 C -0.03 -0.32 5.91 -104.28 -0.62 -0.94 16 3 C -0.09 -0.95 9.31 -39.33 -0.37 -1.31 16 4 C 0.00 -0.04 5.88 -104.82 -0.62 -0.65 16 5 C 0.22 2.33 7.93 -156.27 -1.24 1.10 16 6 N -0.27 -2.94 12.22 32.15 0.39 -2.55 16 7 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 8 N -0.23 -1.42 7.90 60.35 0.48 -0.94 16 9 H 0.48 0.58 8.96 -340.36 -3.05 -2.47 16 10 N -0.29 -2.55 12.07 32.16 0.39 -2.16 16 11 C -0.09 -0.91 9.68 -39.33 -0.38 -1.29 16 12 C -0.09 -0.94 9.51 -39.24 -0.37 -1.31 16 13 C -0.10 -1.35 5.88 -104.93 -0.62 -1.96 16 14 C 0.54 9.18 7.67 -12.39 -0.10 9.08 16 15 O -0.52 -10.49 10.46 5.28 0.06 -10.44 16 16 N -0.61 -10.62 5.41 -10.89 -0.06 -10.68 16 17 C -0.06 -1.37 6.90 -83.86 -0.58 -1.94 16 18 C -0.03 -0.77 10.85 -17.03 -0.18 -0.96 16 19 N -0.26 -7.49 10.40 30.80 0.32 -7.17 16 20 N -0.14 -3.83 3.74 -11.40 -0.04 -3.87 16 21 C -0.32 -8.44 10.25 -14.81 -0.15 -8.59 16 22 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 23 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 24 N -0.77 -21.31 11.81 55.50 0.66 -20.66 16 25 Si 0.93 18.73 29.55 -169.99 -5.02 13.71 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 27 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 28 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 29 C -0.08 -1.93 11.49 -16.38 -0.19 -2.12 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 32 H 0.10 1.56 5.84 -51.93 -0.30 1.25 16 33 H 0.14 1.39 7.87 -52.49 -0.41 0.98 16 34 H 0.14 1.06 7.87 -52.49 -0.41 0.65 16 35 H 0.13 1.10 6.44 -52.49 -0.34 0.76 16 36 H 0.40 5.23 6.88 -40.82 -0.28 4.95 16 37 H 0.18 4.46 5.92 -52.49 -0.31 4.15 16 38 H 0.28 7.00 8.31 -40.82 -0.34 6.67 16 39 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 343.96 15.07 5.18 5.18 Total: -1.00 -34.69 343.96 -7.95 -42.64 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.92 Total: 7.64 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -5.19 Total: -11.06 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 2.94 Total: -47.66 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.06 Total: -10.44 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.69 -7.95 -42.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826250439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.811 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds