Wall clock time and date at job start Tue Mar 31 2020 22:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37697 * 120.02124 * 2 1 4 4 C 1.39437 * 120.03606 * 180.02562 * 3 2 1 5 5 C 1.48360 * 119.97735 * 179.97438 * 4 3 2 6 6 N 1.34086 * 126.67723 * 359.68312 * 5 4 3 7 7 N 1.28986 * 107.26295 * 179.83762 * 6 5 4 8 8 N 1.28729 * 108.95493 * 0.43460 * 7 6 5 9 9 H 0.96999 * 125.33606 * 179.76390 * 8 7 6 10 10 N 1.28866 * 109.33044 * 359.72458 * 8 7 6 11 11 C 1.39492 * 120.05195 * 359.97438 * 4 3 2 12 12 C 1.37661 * 120.03045 * 359.72399 * 11 4 3 13 13 C 1.39691 * 120.01257 * 179.97438 * 2 1 3 14 14 C 1.47717 * 120.02807 * 0.02562 * 13 2 1 15 15 O 1.21594 * 119.99830 * 353.98866 * 14 13 2 16 16 N 1.34769 * 119.99886 * 173.98613 * 14 13 2 17 17 C 1.40520 * 120.00010 * 180.02562 * 16 14 13 18 18 C 1.40666 * 126.08303 * 0.02562 * 17 16 14 19 19 N 1.30908 * 108.38901 * 179.73854 * 18 17 16 20 20 N 1.40071 * 108.41006 * 0.02562 * 19 18 17 21 21 C 1.37318 * 126.06840 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00138 * 179.97438 * 21 20 19 23 23 C 1.38994 * 119.99721 * 359.97160 * 21 20 19 24 24 N 1.31294 * 120.00204 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99773 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47132 * 60.00084 * 25 23 21 27 27 H 1.48502 * 109.47067 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47007 * 300.00039 * 25 23 21 29 29 C 1.35699 * 126.08692 * 179.71600 * 17 16 14 30 30 H 1.09001 * 109.47261 * 263.39522 * 1 2 3 31 31 H 1.09003 * 109.46775 * 23.38975 * 1 2 3 32 32 H 1.08999 * 109.47038 * 143.39078 * 1 2 3 33 33 H 1.07999 * 119.98170 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.98195 * 180.02562 * 11 4 3 35 35 H 1.07997 * 120.01148 * 180.27488 * 12 11 4 36 36 H 0.97001 * 120.00071 * 0.02562 * 16 14 13 37 37 H 1.08000 * 125.81373 * 359.72413 * 18 17 16 38 38 H 0.96993 * 119.99811 * 179.97438 * 24 23 21 39 39 H 1.08001 * 126.24974 * 0.24655 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1922 0.0000 4 6 3.5903 1.1926 -0.0005 5 6 4.3313 2.4779 -0.0011 6 7 3.7996 3.7088 -0.0071 7 7 4.7786 4.5487 -0.0018 8 7 5.8887 3.8969 -0.0021 9 1 6.7731 4.2951 -0.0020 10 7 5.6408 2.6323 -0.0017 11 6 4.2892 -0.0146 -0.0005 12 6 3.6029 -1.2080 0.0057 13 6 2.2057 -1.2096 0.0005 14 6 1.4680 -2.4894 0.0005 15 8 0.2571 -2.4931 0.1104 16 7 2.1372 -3.6529 -0.1212 17 6 1.4355 -4.8703 -0.1218 18 6 0.0421 -5.0234 -0.0042 19 7 -0.2384 -6.3012 -0.0516 20 7 0.9595 -7.0118 -0.2000 21 6 1.0843 -8.3764 -0.2893 22 1 2.0609 -8.8231 -0.4032 23 6 -0.0465 -9.1828 -0.2332 24 7 -1.2339 -8.6397 -0.0953 25 14 0.1233 -11.0391 -0.3540 26 1 0.9713 -11.5322 0.7609 27 1 -1.2204 -11.6656 -0.2691 28 1 0.7539 -11.3951 -1.6505 29 6 1.9807 -6.1071 -0.2416 30 1 -0.3634 -0.1182 1.0208 31 1 -0.3633 0.9433 -0.4080 32 1 -0.3633 -0.8249 -0.6128 33 1 1.6560 2.1276 -0.0004 34 1 5.3692 -0.0130 -0.0005 35 1 4.1443 -2.1424 0.0102 36 1 3.1033 -3.6499 -0.2085 37 1 -0.6745 -4.2230 0.1065 38 1 -2.0229 -9.2024 -0.0565 39 1 3.0310 -6.3342 -0.3500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826250439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:31 Heat of formation + Delta-G solvation = 181.744967 kcal Electronic energy + Delta-G solvation = -26997.427787 eV Core-core repulsion = 22944.460382 eV Total energy + Delta-G solvation = -4052.967405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.47755 -41.84293 -40.96100 -39.31065 -36.07195 -35.48841 -35.06434 -34.82051 -33.28677 -32.33713 -31.83452 -29.60985 -28.06865 -26.91775 -25.97624 -25.62165 -23.56185 -22.92294 -22.65049 -21.43243 -21.15599 -20.18792 -19.34738 -18.52912 -18.15351 -17.39742 -17.20565 -16.98657 -16.29741 -16.23488 -15.89796 -15.56587 -15.18751 -15.12045 -14.80721 -14.56415 -14.33007 -14.13019 -13.65141 -13.44567 -13.37147 -13.29947 -13.08170 -12.98015 -12.84893 -12.72175 -12.40432 -12.32163 -12.12520 -11.98127 -11.89510 -11.77345 -10.97318 -10.78370 -10.44892 -10.07100 -9.88676 -9.70973 -8.47884 -8.44227 -6.20912 -0.65493 0.11945 0.32891 1.00443 1.33162 1.41080 1.41497 1.57741 1.70903 1.97616 2.05742 2.29375 2.51033 2.59501 2.87686 2.94188 3.11390 3.12239 3.75972 3.83492 3.85259 4.11115 4.19629 4.34419 4.45937 4.49336 4.56320 4.67850 4.78191 4.89449 4.93660 5.03261 5.10084 5.17514 5.25929 5.30656 5.34357 5.48501 5.61076 5.62521 5.76357 5.98746 6.35146 6.75519 6.77188 7.09580 7.38888 7.49886 7.71789 8.54929 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035743 B = 0.001934 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.181642 B =14477.334112 C =15241.285483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.034 4.034 3 C -0.086 4.086 4 C 0.002 3.998 5 C 0.206 3.794 6 N -0.291 5.291 7 N -0.056 5.056 8 N -0.198 5.198 9 H 0.495 0.505 10 N -0.285 5.285 11 C -0.085 4.085 12 C -0.076 4.076 13 C -0.121 4.121 14 C 0.536 3.464 15 O -0.558 6.558 16 N -0.609 5.609 17 C -0.044 4.044 18 C -0.057 4.057 19 N -0.311 5.311 20 N -0.169 5.169 21 C -0.354 4.354 22 H 0.141 0.859 23 C -0.007 4.007 24 N -0.825 5.825 25 Si 1.018 2.982 26 H -0.253 1.253 27 H -0.279 1.279 28 H -0.253 1.253 29 C -0.079 4.079 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.418 0.582 37 H 0.170 0.830 38 H 0.276 0.724 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.380 20.199 -0.399 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.106 4.106 4 C -0.002 4.002 5 C -0.073 4.073 6 N -0.163 5.163 7 N -0.051 5.051 8 N -0.049 5.049 9 H 0.355 0.645 10 N -0.138 5.138 11 C -0.105 4.105 12 C -0.095 4.095 13 C -0.125 4.125 14 C 0.326 3.674 15 O -0.438 6.438 16 N -0.254 5.254 17 C -0.150 4.150 18 C -0.232 4.232 19 N -0.143 5.143 20 N 0.062 4.938 21 C -0.485 4.485 22 H 0.159 0.841 23 C -0.219 4.219 24 N -0.453 5.453 25 Si 0.837 3.163 26 H -0.177 1.177 27 H -0.204 1.204 28 H -0.177 1.177 29 C -0.229 4.229 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.167 0.833 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.256 0.744 37 H 0.187 0.813 38 H 0.085 0.915 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 16.455 19.963 -0.275 25.872 hybrid contribution 1.087 -0.231 -0.028 1.111 sum 17.541 19.732 -0.303 26.404 Atomic orbital electron populations 1.21021 0.89960 1.03304 1.03207 1.19971 0.97121 0.91160 0.95252 1.21039 0.92441 0.98142 0.98952 1.17502 0.92041 0.87545 1.03064 1.23693 0.86889 0.94218 1.02544 1.76112 1.22859 0.98773 1.18543 1.78885 0.88905 1.22255 1.15088 1.47817 1.12141 1.01324 1.43635 0.64516 1.74909 1.16964 1.00480 1.21432 1.21239 1.01563 0.89567 0.98109 1.21464 0.91527 0.99914 0.96585 1.19860 0.94636 0.91736 1.06275 1.18632 0.87124 0.84023 0.77665 1.90634 1.15340 1.86895 1.50908 1.42326 1.10322 1.02415 1.70299 1.17289 0.91147 0.85501 1.21037 1.24213 0.95332 0.94753 1.08925 1.78157 1.05925 1.03201 1.27031 1.44828 1.03079 1.05773 1.40075 1.20570 0.97345 0.77234 1.53341 0.84136 1.26875 0.93805 1.06960 0.94257 1.70392 0.99191 1.38575 1.37133 0.84664 0.78248 0.73147 0.80215 1.17726 1.20426 1.17743 1.22011 0.95423 0.87806 1.17701 0.91190 0.90189 0.90766 0.83333 0.81966 0.82099 0.74364 0.81323 0.91456 0.79366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 8.72 71.24 0.62 -2.49 16 2 C -0.03 -0.84 5.91 -19.64 -0.12 -0.95 16 3 C -0.09 -1.77 9.31 22.43 0.21 -1.56 16 4 C 0.00 0.04 5.88 -19.99 -0.12 -0.08 16 5 C 0.21 3.80 7.93 137.32 1.09 4.89 16 6 N -0.29 -5.85 12.22 -52.21 -0.64 -6.49 16 7 N -0.06 -0.88 13.47 37.02 0.50 -0.39 16 8 N -0.20 -1.84 7.90 37.02 0.29 -1.55 16 9 H 0.50 -0.48 8.96 -347.53 -3.12 -3.59 16 10 N -0.29 -4.02 12.07 -52.16 -0.63 -4.65 16 11 C -0.08 -1.34 9.68 22.44 0.22 -1.12 16 12 C -0.08 -1.36 9.51 22.49 0.21 -1.15 16 13 C -0.12 -3.09 5.88 -20.06 -0.12 -3.21 16 14 C 0.54 18.38 7.67 86.75 0.67 19.05 16 15 O -0.56 -23.40 10.46 -4.01 -0.04 -23.44 16 16 N -0.61 -20.38 5.41 -306.63 -1.66 -22.03 16 17 C -0.04 -1.96 6.90 37.75 0.26 -1.70 16 18 C -0.06 -3.07 10.85 85.42 0.93 -2.14 16 19 N -0.31 -18.72 10.40 -56.45 -0.59 -19.31 16 20 N -0.17 -9.29 3.74 -189.99 -0.71 -10.00 16 21 C -0.35 -18.60 10.25 84.02 0.86 -17.74 16 22 H 0.14 6.35 7.83 -2.91 -0.02 6.32 16 23 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 24 N -0.82 -47.72 11.81 21.66 0.26 -47.46 16 25 Si 1.02 38.44 29.55 68.60 2.03 40.47 16 26 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 27 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 28 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 29 C -0.08 -3.58 11.49 83.38 0.96 -2.62 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 1.65 8.04 -2.39 -0.02 1.63 16 32 H 0.07 2.40 5.84 -2.39 -0.01 2.38 16 33 H 0.15 2.77 7.87 -2.91 -0.02 2.75 16 34 H 0.16 1.76 7.87 -2.91 -0.02 1.73 16 35 H 0.16 1.94 6.44 -2.91 -0.02 1.93 16 36 H 0.42 9.89 6.88 -92.71 -0.64 9.25 16 37 H 0.17 9.16 5.92 -2.91 -0.02 9.14 16 38 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.19 6.59 8.06 -2.91 -0.02 6.57 16 Total: -1.00 -80.23 343.96 2.36 -77.87 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -2.58 Total: 27.74 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 6.14 Total: -10.75 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -3.18 Total: -111.88 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.04 Total: -23.44 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -80.23 2.36 -77.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826250439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.614 kcal (2) G-P(sol) polarization free energy of solvation -80.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds