Wall clock time and date at job start Tue Mar 31 2020 22:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35338 * 126.43240 * 2 1 4 4 C 1.41584 * 105.55644 * 180.10688 * 3 2 1 5 5 C 1.47555 * 126.44622 * 179.87810 * 4 3 2 6 6 O 1.21613 * 120.00156 * 359.71199 * 5 4 3 7 7 N 1.34777 * 119.99593 * 179.70899 * 5 4 3 8 8 C 1.36898 * 119.99514 * 179.72273 * 7 5 4 9 9 H 1.08001 * 120.00461 * 0.27723 * 8 7 5 10 10 C 1.39031 * 119.99740 * 180.27661 * 8 7 5 11 11 N 1.31377 * 119.99980 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99948 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47118 * 90.00069 * 12 10 8 14 14 H 1.48507 * 109.46904 * 209.99726 * 12 10 8 15 15 H 1.48494 * 109.47201 * 329.99901 * 12 10 8 16 16 N 1.31907 * 107.10069 * 359.61167 * 4 3 2 17 17 N 1.28480 * 110.11290 * 0.24629 * 16 4 3 18 18 C 1.40106 * 124.95466 * 180.02562 * 17 16 4 19 19 C 1.38955 * 120.01364 * 144.69755 * 18 17 16 20 20 C 1.38162 * 120.17194 * 179.70018 * 19 18 17 21 21 C 1.38101 * 120.18777 * 0.59644 * 20 19 18 22 22 C 1.39320 * 120.01861 * 359.68095 * 21 20 19 23 23 C 1.48473 * 120.08075 * 180.02562 * 22 21 20 24 24 N 1.34050 * 126.67141 * 179.66799 * 23 22 21 25 25 N 1.28982 * 107.26585 * 179.83857 * 24 23 22 26 26 N 1.28724 * 108.94771 * 0.43307 * 25 24 23 27 27 H 0.96992 * 125.34480 * 179.75912 * 26 25 24 28 28 N 1.28870 * 109.31249 * 359.72377 * 26 25 24 29 29 C 1.38644 * 120.01173 * 324.97377 * 18 17 16 30 30 H 1.09002 * 109.47257 * 270.32517 * 1 2 3 31 31 H 1.08999 * 109.47049 * 30.32776 * 1 2 3 32 32 H 1.09002 * 109.47632 * 150.32263 * 1 2 3 33 33 H 1.07991 * 127.22091 * 359.97438 * 3 2 1 34 34 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 35 35 H 0.96999 * 120.00073 * 179.97438 * 11 10 8 36 36 H 1.08007 * 119.91343 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.91195 * 180.28075 * 20 19 18 38 38 H 1.08002 * 119.99299 * 179.70089 * 21 20 19 39 39 H 1.07994 * 120.09498 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3107 1.0889 0.0000 4 6 3.6336 0.5843 -0.0025 5 6 4.8756 1.3810 -0.0061 6 8 4.8188 2.5958 -0.0123 7 7 6.0729 0.7623 -0.0023 8 6 7.2252 1.5014 -0.0113 9 1 7.1748 2.5803 -0.0169 10 6 8.4604 0.8632 -0.0132 11 7 9.5662 1.5725 -0.0223 12 14 8.5476 -1.0027 -0.0042 13 1 8.5649 -1.5041 -1.4019 14 1 9.7849 -1.4371 0.6928 15 1 7.3625 -1.5502 0.7034 16 7 3.5467 -0.7318 0.0047 17 7 2.3138 -1.0933 0.0062 18 6 1.8666 -2.4210 0.0139 19 6 0.7138 -2.7621 0.7107 20 6 0.2663 -4.0693 0.7153 21 6 0.9690 -5.0462 0.0378 22 6 2.1290 -4.7140 -0.6587 23 6 2.8853 -5.7631 -1.3881 24 7 4.0070 -5.5914 -2.1017 25 7 4.3439 -6.7455 -2.5688 26 7 3.4801 -7.6198 -2.1861 27 1 3.5026 -8.5642 -2.4057 28 7 2.5812 -7.0433 -1.4647 29 6 2.5772 -3.3961 -0.6691 30 1 -0.3634 0.0058 1.0277 31 1 -0.3633 0.8870 -0.5189 32 1 -0.3634 -0.8929 -0.5088 33 1 2.0067 2.1251 -0.0004 34 1 6.1183 -0.2066 0.0024 35 1 10.4280 1.1272 -0.0233 36 1 0.1636 -2.0026 1.2464 37 1 -0.6326 -4.3289 1.2545 38 1 0.6191 -6.0679 0.0475 39 1 3.4757 -3.1339 -1.2079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826258910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:54 Heat of formation + Delta-G solvation = 207.748473 kcal Electronic energy + Delta-G solvation = -27657.743077 eV Core-core repulsion = 23605.903268 eV Total energy + Delta-G solvation = -4051.839808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.79321 -42.63821 -39.54068 -37.95972 -34.87473 -34.29796 -33.98889 -33.12159 -32.83873 -31.62712 -30.99536 -29.42059 -27.06841 -25.67270 -25.14445 -24.84186 -23.34783 -22.40819 -21.60114 -20.42964 -19.48408 -19.06933 -18.21648 -17.69530 -17.47346 -16.67198 -16.18688 -15.86349 -15.40294 -15.12082 -14.87019 -14.37783 -14.01292 -13.76085 -13.52022 -13.42506 -13.34075 -13.19204 -12.95245 -12.80405 -12.64890 -12.49407 -12.07180 -11.89698 -11.73025 -11.69319 -11.41962 -11.35722 -11.15409 -10.52137 -10.45391 -9.96738 -9.92376 -9.54708 -9.21884 -8.73456 -8.71761 -8.36160 -8.16358 -6.34870 -3.79843 0.21892 0.67159 0.85841 1.84402 1.87473 2.20353 2.47353 2.50001 3.16462 3.19839 3.23813 3.27873 3.33638 3.83401 4.14074 4.31748 4.38848 4.50349 4.53460 4.64406 4.75588 4.78014 4.92886 5.01511 5.13350 5.19181 5.26189 5.33128 5.34386 5.50478 5.68401 5.79416 5.87497 5.88911 5.96858 6.01194 6.06034 6.17501 6.28296 6.77526 7.09873 7.56668 7.81106 8.11947 8.21014 8.62550 8.92886 9.42958 9.85682 10.76604 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.003936 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.741764 B = 7112.824619 C = 9972.513252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.004 3.996 3 C -0.174 4.174 4 C 0.038 3.962 5 C 0.516 3.484 6 O -0.573 6.573 7 N -0.559 5.559 8 C -0.301 4.301 9 H 0.125 0.875 10 C 0.048 3.952 11 N -0.868 5.868 12 Si 0.872 3.128 13 H -0.266 1.266 14 H -0.274 1.274 15 H -0.263 1.263 16 N -0.281 5.281 17 N -0.253 5.253 18 C 0.147 3.853 19 C -0.106 4.106 20 C -0.102 4.102 21 C -0.082 4.082 22 C -0.001 4.001 23 C 0.219 3.781 24 N -0.259 5.259 25 N -0.044 5.044 26 N -0.228 5.228 27 H 0.476 0.524 28 N -0.292 5.292 29 C -0.065 4.065 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.164 0.836 34 H 0.380 0.620 35 H 0.276 0.724 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 -21.026 -0.836 30.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.124 4.124 5 C 0.302 3.698 6 O -0.456 6.456 7 N -0.196 5.196 8 C -0.431 4.431 9 H 0.142 0.858 10 C -0.158 4.158 11 N -0.507 5.507 12 Si 0.698 3.302 13 H -0.191 1.191 14 H -0.199 1.199 15 H -0.188 1.188 16 N -0.112 5.112 17 N -0.035 5.035 18 C 0.056 3.944 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.103 4.103 22 C -0.005 4.005 23 C -0.061 4.061 24 N -0.132 5.132 25 N -0.039 5.039 26 N -0.073 5.073 27 H 0.330 0.670 28 N -0.144 5.144 29 C -0.087 4.087 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.214 0.786 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.096 -21.456 -1.232 30.115 hybrid contribution -0.351 -1.266 0.116 1.319 sum -21.447 -22.722 -1.117 31.265 Atomic orbital electron populations 1.20463 0.86945 1.03889 1.02908 1.21507 0.95060 0.86170 1.08863 1.21559 0.90805 0.99260 1.08540 1.22646 0.96396 0.88794 1.04578 1.16262 0.80938 0.86475 0.86154 1.90656 1.85782 1.12452 1.56689 1.42135 1.05621 1.08489 1.63316 1.19539 0.81373 0.94687 1.47463 0.85760 1.25071 0.94956 0.98747 0.96981 1.69608 0.97686 1.35965 1.47428 0.86736 0.78852 0.85024 0.79601 1.19078 1.19928 1.18756 1.73758 1.00161 1.15601 1.21723 1.42547 1.03556 1.03791 1.53582 1.17299 0.96022 0.81240 0.99797 1.21322 0.95686 0.97849 0.97862 1.20913 1.00340 0.91336 0.99436 1.21249 0.93094 1.00585 0.95349 1.16949 0.95060 0.89099 0.99372 1.23537 0.93534 0.89730 0.99309 1.76222 1.11724 1.14242 1.11025 1.79000 1.14519 0.93417 1.16994 1.47751 1.14045 1.13944 1.31600 0.66975 1.74862 1.16155 1.08475 1.14911 1.21056 1.00235 0.90426 0.96949 0.90419 0.89543 0.91068 0.81824 0.78641 0.91330 0.84052 0.83960 0.84247 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 8.58 36.00 0.31 -0.41 16 2 C 0.00 0.06 6.75 -81.84 -0.55 -0.49 16 3 C -0.17 -3.05 10.72 -39.34 -0.42 -3.47 16 4 C 0.04 0.83 7.12 -82.76 -0.59 0.24 16 5 C 0.52 13.38 7.77 -12.46 -0.10 13.28 16 6 O -0.57 -16.49 16.49 5.27 0.09 -16.40 16 7 N -0.56 -14.89 5.08 -11.92 -0.06 -14.95 16 8 C -0.30 -8.91 10.16 -15.00 -0.15 -9.06 16 9 H 0.12 4.08 7.38 -52.49 -0.39 3.69 16 10 C 0.05 1.35 5.50 -17.45 -0.10 1.25 16 11 N -0.87 -25.68 13.95 55.50 0.77 -24.90 16 12 Si 0.87 20.77 27.74 -169.99 -4.71 16.06 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.26 -6.02 6.52 56.52 0.37 -5.65 16 16 N -0.28 -5.57 11.28 33.42 0.38 -5.20 16 17 N -0.25 -4.01 3.47 -6.88 -0.02 -4.03 16 18 C 0.15 1.88 6.19 -83.66 -0.52 1.36 16 19 C -0.11 -0.94 8.20 -39.34 -0.32 -1.26 16 20 C -0.10 -0.68 10.03 -39.66 -0.40 -1.08 16 21 C -0.08 -0.65 9.70 -39.23 -0.38 -1.03 16 22 C 0.00 -0.01 5.87 -104.91 -0.62 -0.63 16 23 C 0.22 2.53 7.94 -156.30 -1.24 1.29 16 24 N -0.26 -3.49 12.23 32.16 0.39 -3.10 16 25 N -0.04 -0.48 13.47 60.35 0.81 0.33 16 26 N -0.23 -1.64 7.90 60.35 0.48 -1.17 16 27 H 0.48 0.98 8.96 -340.39 -3.05 -2.07 16 28 N -0.29 -2.67 12.08 32.17 0.39 -2.28 16 29 C -0.06 -0.85 9.33 -39.07 -0.36 -1.21 16 30 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.52 6.85 -51.93 -0.36 0.16 16 33 H 0.16 2.62 8.06 -52.49 -0.42 2.20 16 34 H 0.38 9.44 5.48 -40.82 -0.22 9.22 16 35 H 0.28 7.51 8.31 -40.82 -0.34 7.18 16 36 H 0.14 1.00 6.00 -52.48 -0.32 0.68 16 37 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.14 0.83 7.88 -52.49 -0.41 0.42 16 39 H 0.15 2.28 7.82 -52.49 -0.41 1.87 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -37.64 348.93 -7.66 -45.30 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.99 Total: 6.30 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -5.44 Total: -1.21 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 3.14 Total: -55.30 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.09 Total: -16.40 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.71 Total: 16.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.64 -7.66 -45.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826258910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.048 kcal (2) G-P(sol) polarization free energy of solvation -37.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 215.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 207.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds