Wall clock time and date at job start Tue Mar 31 2020 22:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35338 * 126.43240 * 2 1 4 4 C 1.41584 * 105.55644 * 180.10688 * 3 2 1 5 5 C 1.47555 * 126.44622 * 179.87810 * 4 3 2 6 6 O 1.21613 * 120.00156 * 359.71199 * 5 4 3 7 7 N 1.34777 * 119.99593 * 179.70899 * 5 4 3 8 8 C 1.36898 * 119.99514 * 179.72273 * 7 5 4 9 9 H 1.08001 * 120.00461 * 0.27723 * 8 7 5 10 10 C 1.39031 * 119.99740 * 180.27661 * 8 7 5 11 11 N 1.31377 * 119.99980 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99948 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47118 * 90.00069 * 12 10 8 14 14 H 1.48507 * 109.46904 * 209.99726 * 12 10 8 15 15 H 1.48494 * 109.47201 * 329.99901 * 12 10 8 16 16 N 1.31907 * 107.10069 * 359.61167 * 4 3 2 17 17 N 1.28480 * 110.11290 * 0.24629 * 16 4 3 18 18 C 1.40106 * 124.95466 * 180.02562 * 17 16 4 19 19 C 1.38955 * 120.01364 * 144.69755 * 18 17 16 20 20 C 1.38162 * 120.17194 * 179.70018 * 19 18 17 21 21 C 1.38101 * 120.18777 * 0.59644 * 20 19 18 22 22 C 1.39320 * 120.01861 * 359.68095 * 21 20 19 23 23 C 1.48473 * 120.08075 * 180.02562 * 22 21 20 24 24 N 1.34050 * 126.67141 * 179.66799 * 23 22 21 25 25 N 1.28982 * 107.26585 * 179.83857 * 24 23 22 26 26 N 1.28724 * 108.94771 * 0.43307 * 25 24 23 27 27 H 0.96992 * 125.34480 * 179.75912 * 26 25 24 28 28 N 1.28870 * 109.31249 * 359.72377 * 26 25 24 29 29 C 1.38644 * 120.01173 * 324.97377 * 18 17 16 30 30 H 1.09002 * 109.47257 * 270.32517 * 1 2 3 31 31 H 1.08999 * 109.47049 * 30.32776 * 1 2 3 32 32 H 1.09002 * 109.47632 * 150.32263 * 1 2 3 33 33 H 1.07991 * 127.22091 * 359.97438 * 3 2 1 34 34 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 35 35 H 0.96999 * 120.00073 * 179.97438 * 11 10 8 36 36 H 1.08007 * 119.91343 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.91195 * 180.28075 * 20 19 18 38 38 H 1.08002 * 119.99299 * 179.70089 * 21 20 19 39 39 H 1.07994 * 120.09498 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3107 1.0889 0.0000 4 6 3.6336 0.5843 -0.0025 5 6 4.8756 1.3810 -0.0061 6 8 4.8188 2.5958 -0.0123 7 7 6.0729 0.7623 -0.0023 8 6 7.2252 1.5014 -0.0113 9 1 7.1748 2.5803 -0.0169 10 6 8.4604 0.8632 -0.0132 11 7 9.5662 1.5725 -0.0223 12 14 8.5476 -1.0027 -0.0042 13 1 8.5649 -1.5041 -1.4019 14 1 9.7849 -1.4371 0.6928 15 1 7.3625 -1.5502 0.7034 16 7 3.5467 -0.7318 0.0047 17 7 2.3138 -1.0933 0.0062 18 6 1.8666 -2.4210 0.0139 19 6 0.7138 -2.7621 0.7107 20 6 0.2663 -4.0693 0.7153 21 6 0.9690 -5.0462 0.0378 22 6 2.1290 -4.7140 -0.6587 23 6 2.8853 -5.7631 -1.3881 24 7 4.0070 -5.5914 -2.1017 25 7 4.3439 -6.7455 -2.5688 26 7 3.4801 -7.6198 -2.1861 27 1 3.5026 -8.5642 -2.4057 28 7 2.5812 -7.0433 -1.4647 29 6 2.5772 -3.3961 -0.6691 30 1 -0.3634 0.0058 1.0277 31 1 -0.3633 0.8870 -0.5189 32 1 -0.3634 -0.8929 -0.5088 33 1 2.0067 2.1251 -0.0004 34 1 6.1183 -0.2066 0.0024 35 1 10.4280 1.1272 -0.0233 36 1 0.1636 -2.0026 1.2464 37 1 -0.6326 -4.3289 1.2545 38 1 0.6191 -6.0679 0.0475 39 1 3.4757 -3.1339 -1.2079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826258910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:53 Heat of formation + Delta-G solvation = 178.407683 kcal Electronic energy + Delta-G solvation = -27659.015389 eV Core-core repulsion = 23605.903268 eV Total energy + Delta-G solvation = -4053.112121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.56012 -43.93407 -40.47372 -39.91751 -36.18027 -35.70289 -35.17720 -34.12944 -34.00213 -33.63518 -31.77290 -30.51841 -28.14797 -27.47934 -25.92785 -25.73245 -24.76518 -23.26615 -22.85475 -21.63432 -21.03790 -20.23251 -20.05494 -18.76094 -18.23548 -17.68741 -17.39878 -17.30567 -16.97071 -16.27748 -16.05910 -15.56409 -15.46504 -15.14884 -14.83002 -14.71049 -14.64707 -14.49040 -14.15764 -13.95465 -13.77584 -13.44009 -13.28127 -13.12538 -12.67938 -12.54666 -12.51620 -12.47068 -12.21989 -12.13392 -12.10444 -11.79790 -11.68693 -10.95926 -10.84928 -10.38170 -9.97973 -9.95136 -9.46104 -8.55085 -6.11309 -0.51572 -0.20249 0.08426 0.68764 1.07723 1.23337 1.24875 1.28048 1.29465 1.33237 1.43349 2.10582 2.35891 2.51161 2.58676 2.76596 3.06658 3.13141 3.43088 3.66805 3.78131 3.83072 4.01624 4.06273 4.16976 4.24848 4.37091 4.43186 4.56671 4.62099 4.78275 4.80103 4.99884 5.08413 5.10309 5.18163 5.25554 5.33146 5.46504 5.54930 5.59975 5.82161 6.02477 6.42004 6.68169 6.85370 7.02740 7.24842 7.74926 8.61220 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.003936 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.741764 B = 7112.824619 C = 9972.513252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.034 3.966 3 C -0.199 4.199 4 C -0.005 4.005 5 C 0.523 3.477 6 O -0.612 6.612 7 N -0.566 5.566 8 C -0.332 4.332 9 H 0.073 0.927 10 C 0.006 3.994 11 N -0.911 5.911 12 Si 0.944 3.056 13 H -0.257 1.257 14 H -0.256 1.256 15 H -0.252 1.252 16 N -0.299 5.299 17 N -0.241 5.241 18 C 0.108 3.892 19 C -0.090 4.090 20 C -0.079 4.079 21 C -0.063 4.063 22 C -0.013 4.013 23 C 0.206 3.794 24 N -0.306 5.306 25 N -0.060 5.060 26 N -0.195 5.195 27 H 0.496 0.504 28 N -0.277 5.277 29 C -0.085 4.085 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.170 0.830 34 H 0.388 0.612 35 H 0.285 0.715 36 H 0.169 0.831 37 H 0.193 0.807 38 H 0.167 0.833 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.291 -25.637 0.271 37.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.226 4.226 4 C -0.165 4.165 5 C 0.310 3.690 6 O -0.496 6.496 7 N -0.204 5.204 8 C -0.461 4.461 9 H 0.091 0.909 10 C -0.196 4.196 11 N -0.550 5.550 12 Si 0.765 3.235 13 H -0.181 1.181 14 H -0.180 1.180 15 H -0.177 1.177 16 N -0.132 5.132 17 N -0.023 5.023 18 C 0.018 3.982 19 C -0.110 4.110 20 C -0.097 4.097 21 C -0.084 4.084 22 C -0.017 4.017 23 C -0.074 4.074 24 N -0.178 5.178 25 N -0.054 5.054 26 N -0.047 5.047 27 H 0.356 0.644 28 N -0.130 5.130 29 C -0.107 4.107 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.188 0.812 34 H 0.224 0.776 35 H 0.095 0.905 36 H 0.186 0.814 37 H 0.210 0.790 38 H 0.184 0.816 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -25.903 -26.092 -0.138 36.766 hybrid contribution 0.861 -0.037 -0.242 0.895 sum -25.042 -26.129 -0.380 36.194 Atomic orbital electron populations 1.20781 0.82051 1.05791 1.05533 1.22285 0.97447 0.84181 1.04830 1.21732 0.89579 1.00844 1.10453 1.21989 0.95642 0.89772 1.09129 1.16977 0.82135 0.86515 0.83396 1.90602 1.86919 1.14532 1.57581 1.41977 1.05127 1.08588 1.64705 1.19162 0.83484 0.92920 1.50558 0.90919 1.25869 0.93771 1.04340 0.95613 1.69721 0.98524 1.38511 1.48265 0.85650 0.79783 0.77798 0.80284 1.18096 1.18016 1.17668 1.73622 1.02982 1.14668 1.21943 1.42892 1.02543 1.05701 1.51214 1.17716 0.98202 0.79539 1.02699 1.21694 0.93558 0.99613 0.96177 1.21471 1.00929 0.89584 0.97756 1.21665 0.91193 1.02325 0.93168 1.17078 0.96316 0.87962 1.00331 1.23762 0.93412 0.90659 0.99592 1.76206 1.13345 1.15558 1.12692 1.78933 1.15355 0.93515 1.17635 1.47832 1.12561 1.14642 1.29635 0.64420 1.74816 1.16059 1.07437 1.14730 1.20862 0.99749 0.91970 0.98097 0.87129 0.88010 0.88833 0.81235 0.77615 0.90494 0.81393 0.78986 0.81558 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 8.58 71.23 0.61 -0.41 16 2 C 0.03 0.91 6.75 41.26 0.28 1.18 16 3 C -0.20 -7.01 10.72 22.43 0.24 -6.77 16 4 C -0.01 -0.23 7.12 42.42 0.30 0.07 16 5 C 0.52 29.03 7.77 86.70 0.67 29.71 16 6 O -0.61 -37.99 16.49 -4.07 -0.07 -38.06 16 7 N -0.57 -32.16 5.08 -309.87 -1.57 -33.73 16 8 C -0.33 -21.17 10.16 84.09 0.85 -20.32 16 9 H 0.07 5.27 7.38 -2.91 -0.02 5.25 16 10 C 0.01 0.35 5.50 84.95 0.47 0.82 16 11 N -0.91 -56.49 13.95 21.68 0.30 -56.19 16 12 Si 0.94 44.24 27.74 68.60 1.90 46.15 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 15 H -0.25 -11.29 6.52 99.48 0.65 -10.64 16 16 N -0.30 -12.15 11.28 -48.19 -0.54 -12.69 16 17 N -0.24 -7.37 3.47 -175.67 -0.61 -7.98 16 18 C 0.11 2.50 6.19 38.09 0.24 2.74 16 19 C -0.09 -1.11 8.20 22.42 0.18 -0.92 16 20 C -0.08 -0.52 10.03 22.22 0.22 -0.30 16 21 C -0.06 -0.67 9.70 22.50 0.22 -0.45 16 22 C -0.01 -0.25 5.87 -20.05 -0.12 -0.37 16 23 C 0.21 4.46 7.94 137.39 1.09 5.55 16 24 N -0.31 -8.26 12.23 -52.17 -0.64 -8.89 16 25 N -0.06 -1.26 13.47 37.02 0.50 -0.76 16 26 N -0.20 -2.40 7.90 37.02 0.29 -2.11 16 27 H 0.50 0.72 8.96 -347.56 -3.12 -2.40 16 28 N -0.28 -4.33 12.08 -52.12 -0.63 -4.96 16 29 C -0.08 -2.16 9.33 22.60 0.21 -1.95 16 30 H 0.11 0.75 7.69 -2.39 -0.02 0.73 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.79 6.85 -2.39 -0.02 0.78 16 33 H 0.17 5.56 8.06 -2.92 -0.02 5.53 16 34 H 0.39 20.28 5.48 -92.71 -0.51 19.78 16 35 H 0.29 16.03 8.31 -92.71 -0.77 15.26 16 36 H 0.17 1.19 6.00 -2.91 -0.02 1.18 16 37 H 0.19 -0.46 8.06 -2.91 -0.02 -0.48 16 38 H 0.17 0.94 7.88 -2.91 -0.02 0.91 16 39 H 0.12 3.72 7.82 -2.91 -0.02 3.70 16 Total: -1.00 -93.37 348.93 1.89 -91.49 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -2.52 Total: 19.18 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.47 Total: 8.57 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -2.90 Total: -127.32 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.07 Total: -38.06 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.15 kcal Total: -93.37 1.89 -91.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826258910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 269.893 kcal (2) G-P(sol) polarization free energy of solvation -93.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds