Wall clock time and date at job start Tue Mar 31 2020 22:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38979 * 119.99774 * 179.97438 * 15 14 13 17 17 C 1.39582 * 120.05468 * 0.02562 * 16 15 14 18 18 C 1.38326 * 118.00347 * 179.97438 * 17 16 15 19 19 C 1.39882 * 117.96570 * 0.02562 * 18 17 16 20 20 C 1.48400 * 120.09373 * 180.02562 * 19 18 17 21 21 N 1.34068 * 126.67569 * 0.02562 * 20 19 18 22 22 N 1.28990 * 107.26802 * 179.97438 * 21 20 19 23 23 N 1.28729 * 108.94549 * 0.02562 * 22 21 20 24 24 H 0.97004 * 125.33253 * 180.02562 * 23 22 21 25 25 N 1.28868 * 109.32291 * 359.72539 * 23 22 21 26 26 N 1.32556 * 119.81374 * 359.97438 * 19 18 17 27 27 N 1.28356 * 122.13849 * 359.71422 * 26 19 18 28 28 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 29 29 C 1.38101 * 120.07230 * 0.04164 * 28 13 12 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 33 33 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 34 34 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 35 35 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 36 36 H 1.08000 * 120.99937 * 359.97438 * 17 16 15 37 37 H 1.07992 * 121.01753 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.96698 * 180.02562 * 28 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3817 -8.7916 1.0378 17 6 5.8782 -9.4495 -0.0887 18 6 6.6081 -10.6084 0.1050 19 6 6.8027 -11.0493 1.4182 20 6 7.5789 -12.2866 1.6804 21 7 8.1512 -13.0819 0.7653 22 7 8.7268 -14.0452 1.4014 23 7 8.5375 -13.8838 2.6645 24 1 8.8686 -14.4722 3.3610 25 7 7.8445 -12.8148 2.8587 26 7 6.2926 -10.3582 2.4278 27 7 5.6206 -9.2798 2.2466 28 6 4.2024 -4.5970 -0.2043 29 6 3.4573 -3.4394 -0.0951 30 1 -0.4850 0.8400 0.0004 31 1 0.3579 -4.7892 -0.2301 32 1 1.6954 -6.8451 -0.4339 33 1 3.8358 -7.8156 -1.0337 34 1 5.3321 -6.8566 -0.9342 35 1 4.2983 -7.1670 1.6758 36 1 5.6979 -9.0652 -1.0818 37 1 7.0152 -11.1561 -0.7320 38 1 5.2812 -4.5470 -0.1947 39 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826381852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:34 Heat of formation + Delta-G solvation = 166.919089 kcal Electronic energy + Delta-G solvation = -26061.639708 eV Core-core repulsion = 22008.029405 eV Total energy + Delta-G solvation = -4053.610303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.48443 -41.94614 -40.83012 -38.82252 -37.12938 -35.58546 -34.75513 -34.33901 -33.64725 -32.47039 -31.80437 -30.41028 -27.74274 -26.99320 -26.04604 -25.17093 -24.74085 -23.64438 -23.27904 -22.03715 -20.30634 -19.88606 -19.28732 -18.79272 -18.18698 -18.14464 -17.70227 -16.59273 -16.51513 -16.17056 -16.09728 -15.64563 -15.42376 -15.23224 -15.10862 -14.81476 -14.40163 -14.35099 -14.27277 -13.85243 -13.52448 -13.43401 -13.04568 -12.67781 -12.62681 -12.45425 -12.37969 -12.29017 -12.20495 -12.16520 -12.08478 -11.47338 -11.18276 -10.98966 -10.83311 -10.61214 -9.79794 -9.02206 -8.99221 -8.49190 -6.17410 -0.38447 -0.08359 0.15529 0.53116 0.59608 1.19708 1.35544 1.37334 1.42635 1.53269 2.00147 2.16377 2.45654 2.68138 2.84801 2.99142 3.17462 3.49411 3.57616 3.64062 3.86937 3.95879 4.00071 4.05158 4.11389 4.18625 4.41573 4.48646 4.57576 4.64096 4.78151 4.82140 4.93525 5.05129 5.08437 5.14658 5.27881 5.53651 5.60560 5.70478 5.74630 5.93545 6.01407 6.19468 6.46087 6.95900 7.08554 7.75537 7.75605 8.73845 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.001568 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.185601 B =17855.265341 C =18048.729196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.231 6.231 10 C 0.121 3.879 11 C -0.210 4.210 12 C -0.041 4.041 13 C -0.184 4.184 14 C 0.183 3.817 15 N -0.697 5.697 16 C 0.350 3.650 17 C -0.167 4.167 18 C -0.033 4.033 19 C 0.063 3.937 20 C 0.225 3.775 21 N -0.275 5.275 22 N -0.050 5.050 23 N -0.200 5.200 24 H 0.495 0.505 25 N -0.282 5.282 26 N -0.191 5.191 27 N -0.338 5.338 28 C -0.043 4.043 29 C -0.248 4.248 30 H 0.273 0.727 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.409 0.591 36 H 0.191 0.809 37 H 0.185 0.815 38 H 0.143 0.857 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.466 -24.891 -1.109 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.137 6.137 10 C 0.070 3.930 11 C -0.229 4.229 12 C -0.060 4.060 13 C -0.185 4.185 14 C 0.060 3.940 15 N -0.327 5.327 16 C 0.106 3.894 17 C -0.200 4.200 18 C -0.062 4.062 19 C -0.090 4.090 20 C -0.057 4.057 21 N -0.149 5.149 22 N -0.045 5.045 23 N -0.051 5.051 24 H 0.355 0.645 25 N -0.135 5.135 26 N -0.035 5.035 27 N -0.191 5.191 28 C -0.062 4.062 29 C -0.268 4.268 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.169 0.831 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.245 0.755 36 H 0.208 0.792 37 H 0.202 0.798 38 H 0.160 0.840 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.144 -24.961 0.138 30.282 hybrid contribution -0.239 1.246 -0.231 1.289 sum 16.905 -23.715 -0.093 29.124 Atomic orbital electron populations 1.70182 1.08031 1.28784 1.48659 1.26578 0.96818 1.02753 0.95812 0.84535 0.78311 0.74910 0.78515 1.17381 1.19355 1.19521 1.21872 0.92565 0.81340 1.53135 0.87885 1.83944 1.36191 1.12757 1.80851 1.20049 0.91742 0.87960 0.93209 1.20481 1.00078 0.90643 1.11701 1.20949 0.93323 0.96883 0.94806 1.19487 0.93335 0.94317 1.11394 1.20357 0.99600 0.91657 0.82353 1.44975 1.54689 1.22746 1.10307 1.20440 0.88923 0.88091 0.91914 1.22163 1.00797 0.96391 1.00628 1.22324 0.92927 0.94366 0.96553 1.19260 1.02811 0.94168 0.92757 1.22842 1.00697 0.97245 0.84961 1.76039 1.11330 1.01178 1.26350 1.78846 1.16668 1.17946 0.91032 1.47849 1.32352 1.16777 1.08156 0.64526 1.75120 1.12776 1.00200 1.25392 1.72879 1.02210 0.99382 1.28989 1.73063 1.17388 1.08087 1.20595 1.21004 0.99945 0.90818 0.94417 1.21266 0.92988 1.00303 1.12214 0.91821 0.87013 0.83126 0.88399 0.88658 0.75536 0.79166 0.79755 0.83955 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.33 13.67 21.62 0.30 -55.04 16 2 C -0.02 -1.21 5.49 84.84 0.47 -0.74 16 3 Si 1.02 41.82 29.55 68.60 2.03 43.85 16 4 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.41 -23.33 9.49 67.92 0.64 -22.69 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.46 9.76 -22.72 -0.22 -13.68 16 10 C 0.12 5.66 6.65 22.58 0.15 5.81 16 11 C -0.21 -8.11 9.99 22.39 0.22 -7.89 16 12 C -0.04 -1.14 9.69 22.25 0.22 -0.93 16 13 C -0.18 -4.41 5.25 -19.84 -0.10 -4.52 16 14 C 0.18 2.70 5.04 85.63 0.43 3.13 16 15 N -0.70 -12.59 5.72 -348.30 -1.99 -14.58 16 16 C 0.35 6.89 7.74 133.14 1.03 7.92 16 17 C -0.17 -2.23 9.40 22.62 0.21 -2.01 16 18 C -0.03 -0.48 9.84 22.69 0.22 -0.25 16 19 C 0.06 1.34 6.84 42.14 0.29 1.63 16 20 C 0.22 4.57 8.05 137.35 1.11 5.68 16 21 N -0.27 -5.11 12.28 -52.21 -0.64 -5.75 16 22 N -0.05 -0.75 13.47 37.02 0.50 -0.26 16 23 N -0.20 -2.20 7.90 37.02 0.29 -1.91 16 24 H 0.50 0.41 8.96 -347.53 -3.12 -2.70 16 25 N -0.28 -5.22 12.39 -52.16 -0.65 -5.87 16 26 N -0.19 -5.03 11.44 -48.31 -0.55 -5.58 16 27 N -0.34 -8.83 11.53 -55.05 -0.63 -9.47 16 28 C -0.04 -1.25 9.69 22.25 0.22 -1.03 16 29 C -0.25 -9.86 9.17 22.39 0.21 -9.65 16 30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 32 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.10 1.02 7.90 -2.39 -0.02 1.00 16 34 H 0.10 1.04 7.90 -2.39 -0.02 1.02 16 35 H 0.41 8.49 8.59 -92.71 -0.80 7.70 16 36 H 0.19 1.11 6.82 -2.91 -0.02 1.09 16 37 H 0.19 1.64 7.94 -2.91 -0.02 1.61 16 38 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.12 4.83 5.64 -2.91 -0.02 4.81 16 Total: -1.00 -78.82 352.81 0.99 -77.83 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -2.74 Total: 16.02 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 5.31 Total: -25.56 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.38 Total: -98.46 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.22 Total: -13.68 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -78.82 0.99 -77.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826381852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.754 kcal (2) G-P(sol) polarization free energy of solvation -78.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds