Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86789 * 120.00480 * 2 1 4 4 H 1.48500 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47312 * 300.00180 * 3 2 1 6 6 H 1.48499 * 109.47283 * 60.00274 * 3 2 1 7 7 C 1.38895 * 119.99121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99270 * 185.46575 * 7 2 1 9 9 N 1.37132 * 120.00277 * 5.46872 * 7 2 1 10 10 C 1.34783 * 119.99641 * 233.62107 * 9 7 2 11 11 O 1.21278 * 119.99900 * 186.00330 * 10 9 7 12 12 C 1.50697 * 120.00002 * 6.00609 * 10 9 7 13 13 N 1.46500 * 109.46775 * 175.01236 * 12 10 9 14 14 C 1.36861 * 126.49015 * 264.68197 * 13 12 10 15 15 C 1.34865 * 107.02012 * 179.84384 * 14 13 12 16 16 N 1.33795 * 108.37521 * 0.43132 * 15 14 13 17 17 C 1.31401 * 109.25410 * 359.72815 * 16 15 14 18 18 C 1.48014 * 125.83303 * 180.02562 * 17 16 15 19 19 N 1.34171 * 126.70136 * 179.97438 * 18 17 16 20 20 N 1.28983 * 107.25718 * 180.02562 * 19 18 17 21 21 N 1.28723 * 108.98340 * 0.02562 * 20 19 18 22 22 H 0.96990 * 125.32098 * 180.02562 * 21 20 19 23 23 N 1.28876 * 109.35324 * 359.72721 * 21 20 19 24 24 C 1.39786 * 120.00360 * 53.62575 * 9 7 2 25 25 C 1.38962 * 120.07687 * 188.28441 * 24 9 7 26 26 C 1.38085 * 119.92006 * 179.78737 * 25 24 9 27 27 C 1.38315 * 120.07613 * 0.46258 * 26 25 24 28 28 C 1.38308 * 120.15739 * 359.78809 * 27 26 25 29 29 C 1.38081 * 120.07428 * 359.97438 * 28 27 26 30 30 H 0.97004 * 119.99400 * 4.99709 * 1 2 3 31 31 H 1.08994 * 109.47373 * 55.00694 * 12 10 9 32 32 H 1.09002 * 109.47025 * 295.00956 * 12 10 9 33 33 H 1.08001 * 126.49054 * 0.02562 * 14 13 12 34 34 H 1.08001 * 125.80761 * 180.19068 * 15 14 13 35 35 H 1.08000 * 120.04225 * 359.97438 * 25 24 9 36 36 H 1.08000 * 119.96285 * 180.24945 * 26 25 24 37 37 H 1.07997 * 119.92078 * 179.76511 * 27 26 25 38 38 H 1.07995 * 119.96126 * 179.97438 * 28 27 26 39 39 H 1.08004 * 120.03859 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.7083 1.3461 -0.0006 5 1 1.8897 2.3963 -1.2124 6 1 1.8897 2.3963 1.2125 7 6 2.0085 -1.2030 -0.0005 8 1 3.0849 -1.2052 0.0886 9 7 1.3274 -2.3878 -0.1142 10 6 1.5134 -3.3622 0.7982 11 8 0.9966 -4.4478 0.6399 12 6 2.3634 -3.1026 2.0152 13 7 2.3127 -4.2665 2.9035 14 6 1.4799 -4.4360 3.9762 15 6 1.7623 -5.6426 4.5084 16 7 2.7465 -6.1992 3.7931 17 6 3.0907 -5.3839 2.8218 18 6 4.1426 -5.6352 1.8112 19 7 4.5076 -4.8164 0.8130 20 7 5.4533 -5.4044 0.1622 21 7 5.6904 -6.5458 0.7081 22 1 6.3574 -7.1830 0.4084 23 7 4.9073 -6.7067 1.7189 24 6 0.4404 -2.5849 -1.1765 25 6 -0.3770 -3.7085 -1.2018 26 6 -1.2551 -3.8978 -2.2505 27 6 -1.3149 -2.9757 -3.2797 28 6 -0.4991 -1.8590 -3.2603 29 6 0.3779 -1.6608 -2.2123 30 1 -0.4849 0.8369 -0.0732 31 1 1.9854 -2.2265 2.5422 32 1 3.3938 -2.9249 1.7075 33 1 0.7353 -3.7373 4.3280 34 1 1.2791 -6.0828 5.3681 35 1 -0.3277 -4.4312 -0.4008 36 1 -1.8936 -4.7687 -2.2688 37 1 -2.0000 -3.1282 -4.1005 38 1 -0.5481 -1.1412 -4.0657 39 1 1.0150 -0.7888 -2.1980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826382234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = 213.126839 kcal Electronic energy + Delta-G solvation = -29324.531726 eV Core-core repulsion = 25272.925141 eV Total energy + Delta-G solvation = -4051.606585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.36955 -41.80565 -39.70342 -37.30435 -35.11657 -34.37958 -33.58080 -33.26470 -32.01201 -29.74914 -29.47363 -29.17223 -27.01842 -25.26818 -24.65435 -24.17349 -22.06652 -21.38356 -21.00212 -20.44095 -19.66978 -18.88762 -17.99129 -17.14927 -16.81328 -16.42606 -15.65665 -15.38030 -14.90777 -14.81253 -14.60204 -14.23830 -13.97080 -13.63630 -13.44925 -13.22520 -12.91018 -12.81612 -12.38687 -12.28876 -12.14605 -11.71589 -11.49480 -11.37309 -11.30064 -11.17001 -11.00180 -10.88936 -10.84528 -10.51172 -10.13369 -9.89335 -9.65576 -9.36671 -8.88978 -8.35629 -8.12932 -7.84882 -6.99266 -6.41195 -4.64203 1.04989 1.53603 2.17239 2.34402 2.51152 2.60173 2.87073 2.96236 3.07599 3.10640 3.47052 3.56839 3.63875 3.87314 4.21200 4.45309 4.66123 5.04663 5.11278 5.19065 5.28122 5.50776 5.59544 5.59637 5.80779 5.83102 5.84774 5.96729 6.11449 6.38643 6.48969 6.62017 6.66060 6.81033 6.85778 7.05168 7.15652 7.17927 7.43746 7.55247 7.58321 7.68609 7.99660 8.07282 8.26136 8.32282 8.73276 9.06882 9.47374 10.37919 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004515 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.257331 B = 6200.085299 C = 6727.117753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.059 3.941 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.375 5.375 10 C 0.485 3.515 11 O -0.555 6.555 12 C 0.098 3.902 13 N -0.410 5.410 14 C -0.014 4.014 15 C -0.031 4.031 16 N -0.448 5.448 17 C 0.273 3.727 18 C 0.266 3.734 19 N -0.257 5.257 20 N -0.045 5.045 21 N -0.230 5.230 22 H 0.475 0.525 23 N -0.265 5.265 24 C 0.195 3.805 25 C -0.181 4.181 26 C -0.117 4.117 27 C -0.172 4.172 28 C -0.120 4.120 29 C -0.104 4.104 30 H 0.276 0.724 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.163 0.837 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -4.695 3.015 8.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.152 4.152 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.505 4.505 8 H 0.115 0.885 9 N -0.083 5.083 10 C 0.275 3.725 11 O -0.438 6.438 12 C -0.027 4.027 13 N -0.091 5.091 14 C -0.151 4.151 15 C -0.182 4.182 16 N -0.169 5.169 17 C 0.013 3.987 18 C -0.015 4.015 19 N -0.132 5.132 20 N -0.040 5.040 21 N -0.076 5.076 22 H 0.330 0.670 23 N -0.118 5.118 24 C 0.099 3.901 25 C -0.200 4.200 26 C -0.136 4.136 27 C -0.192 4.192 28 C -0.138 4.138 29 C -0.125 4.125 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.200 0.800 34 H 0.194 0.806 35 H 0.179 0.821 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.579 -5.534 2.586 8.977 hybrid contribution -0.150 1.487 -0.201 1.508 sum 6.429 -4.047 2.385 7.962 Atomic orbital electron populations 1.69973 1.06158 1.28786 1.41882 1.25641 0.95329 1.00172 0.94068 0.86049 0.80231 0.81299 0.78471 1.18629 1.20055 1.20199 1.19489 0.91917 0.81935 1.57116 0.88455 1.40858 1.35690 1.13711 1.18004 1.20560 0.82834 0.84950 0.84130 1.90370 1.51271 1.25334 1.76819 1.21791 1.04277 0.85974 0.90668 1.45149 1.26600 1.15156 1.22200 1.22928 0.99108 1.01556 0.91510 1.22247 0.99350 0.93556 1.03058 1.70304 1.14092 1.27791 1.04704 1.18425 0.96524 0.86684 0.97099 1.21601 0.96491 0.88333 0.95076 1.76237 1.07353 1.24616 1.04968 1.78925 1.11413 0.94378 1.19269 1.47772 1.27065 1.15221 1.17582 0.67032 1.75081 1.05809 1.23513 1.07382 1.18124 0.91041 0.93478 0.87459 1.22331 0.96803 0.99868 1.01020 1.20834 0.98966 0.98706 0.95125 1.20764 1.02096 0.96636 0.99663 1.20733 0.97459 0.97440 0.98213 1.20746 0.99939 0.99280 0.92529 0.91379 0.85477 0.85590 0.80040 0.80588 0.82062 0.87746 0.88098 0.87691 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.57 11.62 55.49 0.64 -19.92 16 2 C 0.06 1.35 3.85 -17.48 -0.07 1.28 16 3 Si 0.91 17.65 29.56 -169.99 -5.02 12.62 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.38 -8.71 7.40 -14.94 -0.11 -8.82 16 8 H 0.10 2.15 7.78 -52.49 -0.41 1.74 16 9 N -0.37 -8.97 2.66 -58.98 -0.16 -9.13 16 10 C 0.49 10.98 7.60 -10.98 -0.08 10.89 16 11 O -0.55 -13.64 12.91 5.56 0.07 -13.57 16 12 C 0.10 1.82 4.92 -5.19 -0.03 1.79 16 13 N -0.41 -7.30 2.30 -115.56 -0.27 -7.57 16 14 C -0.01 -0.21 11.58 -16.50 -0.19 -0.40 16 15 C -0.03 -0.46 11.84 -17.89 -0.21 -0.68 16 16 N -0.45 -8.09 11.27 -11.19 -0.13 -8.21 16 17 C 0.27 5.11 7.81 -154.68 -1.21 3.90 16 18 C 0.27 4.80 8.14 -156.27 -1.27 3.53 16 19 N -0.26 -4.65 10.73 32.09 0.34 -4.31 16 20 N -0.04 -0.67 13.47 60.35 0.81 0.14 16 21 N -0.23 -2.71 7.90 60.35 0.48 -2.24 16 22 H 0.48 2.88 8.96 -340.35 -3.05 -0.17 16 23 N -0.26 -4.07 12.41 32.11 0.40 -3.68 16 24 C 0.20 4.80 5.71 -83.70 -0.48 4.33 16 25 C -0.18 -4.30 8.96 -39.37 -0.35 -4.66 16 26 C -0.12 -2.47 10.04 -39.61 -0.40 -2.86 16 27 C -0.17 -3.41 10.04 -39.53 -0.40 -3.80 16 28 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 29 C -0.10 -2.43 7.86 -39.37 -0.31 -2.74 16 30 H 0.28 6.44 8.32 -40.82 -0.34 6.10 16 31 H 0.13 2.16 8.05 -51.93 -0.42 1.75 16 32 H 0.13 2.28 6.72 -51.93 -0.35 1.93 16 33 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.18 1.97 8.06 -52.49 -0.42 1.54 16 35 H 0.16 4.05 4.75 -55.00 -0.26 3.79 16 36 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 2.93 6.03 -52.48 -0.32 2.61 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -31.82 342.81 -9.21 -41.03 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.05 Total: 10.76 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -5.50 Total: -1.09 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 2.13 Total: -54.92 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.02 Total: 12.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.82 -9.21 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.160 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds