Wall clock time and date at job start Tue Mar 31 2020 22:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86789 * 120.00480 * 2 1 4 4 H 1.48500 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47312 * 300.00180 * 3 2 1 6 6 H 1.48499 * 109.47283 * 60.00274 * 3 2 1 7 7 C 1.38895 * 119.99121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99270 * 185.46575 * 7 2 1 9 9 N 1.37132 * 120.00277 * 5.46872 * 7 2 1 10 10 C 1.34783 * 119.99641 * 233.62107 * 9 7 2 11 11 O 1.21278 * 119.99900 * 186.00330 * 10 9 7 12 12 C 1.50697 * 120.00002 * 6.00609 * 10 9 7 13 13 N 1.46500 * 109.46775 * 175.01236 * 12 10 9 14 14 C 1.36861 * 126.49015 * 264.68197 * 13 12 10 15 15 C 1.34865 * 107.02012 * 179.84384 * 14 13 12 16 16 N 1.33795 * 108.37521 * 0.43132 * 15 14 13 17 17 C 1.31401 * 109.25410 * 359.72815 * 16 15 14 18 18 C 1.48014 * 125.83303 * 180.02562 * 17 16 15 19 19 N 1.34171 * 126.70136 * 179.97438 * 18 17 16 20 20 N 1.28983 * 107.25718 * 180.02562 * 19 18 17 21 21 N 1.28723 * 108.98340 * 0.02562 * 20 19 18 22 22 H 0.96990 * 125.32098 * 180.02562 * 21 20 19 23 23 N 1.28876 * 109.35324 * 359.72721 * 21 20 19 24 24 C 1.39786 * 120.00360 * 53.62575 * 9 7 2 25 25 C 1.38962 * 120.07687 * 188.28441 * 24 9 7 26 26 C 1.38085 * 119.92006 * 179.78737 * 25 24 9 27 27 C 1.38315 * 120.07613 * 0.46258 * 26 25 24 28 28 C 1.38308 * 120.15739 * 359.78809 * 27 26 25 29 29 C 1.38081 * 120.07428 * 359.97438 * 28 27 26 30 30 H 0.97004 * 119.99400 * 4.99709 * 1 2 3 31 31 H 1.08994 * 109.47373 * 55.00694 * 12 10 9 32 32 H 1.09002 * 109.47025 * 295.00956 * 12 10 9 33 33 H 1.08001 * 126.49054 * 0.02562 * 14 13 12 34 34 H 1.08001 * 125.80761 * 180.19068 * 15 14 13 35 35 H 1.08000 * 120.04225 * 359.97438 * 25 24 9 36 36 H 1.08000 * 119.96285 * 180.24945 * 26 25 24 37 37 H 1.07997 * 119.92078 * 179.76511 * 27 26 25 38 38 H 1.07995 * 119.96126 * 179.97438 * 28 27 26 39 39 H 1.08004 * 120.03859 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.7083 1.3461 -0.0006 5 1 1.8897 2.3963 -1.2124 6 1 1.8897 2.3963 1.2125 7 6 2.0085 -1.2030 -0.0005 8 1 3.0849 -1.2052 0.0886 9 7 1.3274 -2.3878 -0.1142 10 6 1.5134 -3.3622 0.7982 11 8 0.9966 -4.4478 0.6399 12 6 2.3634 -3.1026 2.0152 13 7 2.3127 -4.2665 2.9035 14 6 1.4799 -4.4360 3.9762 15 6 1.7623 -5.6426 4.5084 16 7 2.7465 -6.1992 3.7931 17 6 3.0907 -5.3839 2.8218 18 6 4.1426 -5.6352 1.8112 19 7 4.5076 -4.8164 0.8130 20 7 5.4533 -5.4044 0.1622 21 7 5.6904 -6.5458 0.7081 22 1 6.3574 -7.1830 0.4084 23 7 4.9073 -6.7067 1.7189 24 6 0.4404 -2.5849 -1.1765 25 6 -0.3770 -3.7085 -1.2018 26 6 -1.2551 -3.8978 -2.2505 27 6 -1.3149 -2.9757 -3.2797 28 6 -0.4991 -1.8590 -3.2603 29 6 0.3779 -1.6608 -2.2123 30 1 -0.4849 0.8369 -0.0732 31 1 1.9854 -2.2265 2.5422 32 1 3.3938 -2.9249 1.7075 33 1 0.7353 -3.7373 4.3280 34 1 1.2791 -6.0828 5.3681 35 1 -0.3277 -4.4312 -0.4008 36 1 -1.8936 -4.7687 -2.2688 37 1 -2.0000 -3.1282 -4.1005 38 1 -0.5481 -1.1412 -4.0657 39 1 1.0150 -0.7888 -2.1980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826382234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:22 Heat of formation + Delta-G solvation = 193.626096 kcal Electronic energy + Delta-G solvation = -29325.377341 eV Core-core repulsion = 25272.925141 eV Total energy + Delta-G solvation = -4052.452201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.57225 -43.09751 -41.40598 -38.98270 -36.85350 -35.61916 -34.94863 -34.48764 -33.78140 -31.43474 -31.01042 -30.49844 -28.52721 -27.02658 -25.85279 -25.42845 -23.69513 -23.04673 -22.26725 -21.81495 -21.26165 -20.18444 -19.56115 -18.46599 -18.17881 -17.95615 -17.38691 -16.99686 -16.43464 -16.24439 -16.05044 -15.74371 -15.36559 -15.07683 -14.82040 -14.76715 -14.46233 -14.25578 -13.98621 -13.91064 -13.43883 -13.35213 -13.09333 -13.01835 -12.80469 -12.53214 -12.48795 -12.25911 -12.08514 -12.05204 -11.77353 -11.19706 -11.09157 -11.06488 -10.61424 -10.05067 -9.55386 -9.35776 -8.74310 -8.15338 -6.44141 -0.15386 0.25160 0.65595 0.79425 1.09190 1.37830 1.42114 1.49559 1.60716 1.66186 1.91725 2.19663 2.24982 2.38965 2.76591 2.93650 3.03733 3.35521 3.83677 3.89245 3.92880 3.99753 4.22843 4.29701 4.34028 4.41843 4.46856 4.57003 4.63873 4.89289 4.96314 5.11495 5.20934 5.36001 5.40639 5.54920 5.70050 5.76046 5.81678 5.85892 5.88921 6.01020 6.25730 6.57706 6.82726 6.97847 7.02523 7.32777 7.73665 8.64897 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.004515 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.257331 B = 6200.085299 C = 6727.117753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.030 3.970 3 Si 0.977 3.023 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.385 4.385 8 H 0.102 0.898 9 N -0.387 5.387 10 C 0.478 3.522 11 O -0.581 6.581 12 C 0.112 3.888 13 N -0.418 5.418 14 C -0.017 4.017 15 C -0.031 4.031 16 N -0.467 5.467 17 C 0.247 3.753 18 C 0.247 3.753 19 N -0.289 5.289 20 N -0.048 5.048 21 N -0.193 5.193 22 H 0.498 0.502 23 N -0.266 5.266 24 C 0.167 3.833 25 C -0.208 4.208 26 C -0.119 4.119 27 C -0.165 4.165 28 C -0.119 4.119 29 C -0.123 4.123 30 H 0.275 0.725 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.212 0.788 34 H 0.214 0.786 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -4.419 2.707 8.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.512 4.512 8 H 0.119 0.881 9 N -0.095 5.095 10 C 0.269 3.731 11 O -0.466 6.466 12 C -0.013 4.013 13 N -0.100 5.100 14 C -0.153 4.153 15 C -0.181 4.181 16 N -0.188 5.188 17 C -0.013 4.013 18 C -0.035 4.035 19 N -0.163 5.163 20 N -0.043 5.043 21 N -0.045 5.045 22 H 0.358 0.642 23 N -0.120 5.120 24 C 0.071 3.929 25 C -0.228 4.228 26 C -0.138 4.138 27 C -0.184 4.184 28 C -0.137 4.137 29 C -0.144 4.144 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.229 0.771 34 H 0.231 0.769 35 H 0.161 0.839 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.554 -5.279 2.270 8.717 hybrid contribution -0.146 1.263 -0.153 1.280 sum 6.409 -4.017 2.118 7.854 Atomic orbital electron populations 1.70082 1.07645 1.29405 1.43107 1.26299 0.95734 1.02665 0.93129 0.85110 0.79399 0.77386 0.78140 1.17781 1.20287 1.19964 1.19718 0.92158 0.82150 1.57141 0.88087 1.41093 1.35796 1.14201 1.18369 1.21141 0.82792 0.84318 0.84842 1.90346 1.52443 1.26224 1.77606 1.21599 1.03462 0.86762 0.89444 1.45216 1.27256 1.14847 1.22652 1.23582 0.98859 1.02325 0.90503 1.22918 0.98390 0.93346 1.03480 1.70305 1.15200 1.28201 1.05112 1.18704 0.97416 0.87293 0.97886 1.21737 0.97232 0.89034 0.95473 1.76209 1.08570 1.25797 1.05726 1.78832 1.11085 0.95170 1.19185 1.47803 1.26096 1.14672 1.15919 0.64198 1.75023 1.05928 1.22902 1.08166 1.18478 0.91870 0.94257 0.88327 1.22329 0.98488 0.99903 1.02041 1.21181 0.98292 0.99851 0.94459 1.21178 1.01795 0.95393 1.00030 1.21135 0.96323 0.98278 0.98012 1.20798 1.01097 0.98971 0.93499 0.91465 0.84167 0.85452 0.77124 0.76943 0.83889 0.85158 0.84060 0.84661 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.19 11.62 21.65 0.25 -42.94 16 2 C 0.03 1.36 3.85 84.91 0.33 1.69 16 3 Si 0.98 35.92 29.56 68.60 2.03 37.95 16 4 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.39 -18.03 7.40 84.02 0.62 -17.41 16 8 H 0.10 4.52 7.78 -2.91 -0.02 4.50 16 9 N -0.39 -19.02 2.66 -458.89 -1.22 -20.24 16 10 C 0.48 22.27 7.60 87.66 0.67 22.94 16 11 O -0.58 -29.68 12.91 -3.02 -0.04 -29.71 16 12 C 0.11 4.25 4.92 85.63 0.42 4.68 16 13 N -0.42 -14.97 2.30 -519.51 -1.19 -16.16 16 14 C -0.02 -0.49 11.58 83.13 0.96 0.47 16 15 C -0.03 -0.89 11.84 83.62 0.99 0.10 16 16 N -0.47 -16.71 11.27 -189.31 -2.13 -18.84 16 17 C 0.25 9.32 7.81 136.61 1.07 10.38 16 18 C 0.25 9.02 8.14 137.16 1.12 10.14 16 19 N -0.29 -10.67 10.73 -52.37 -0.56 -11.23 16 20 N -0.05 -1.44 13.47 37.02 0.50 -0.94 16 21 N -0.19 -4.40 7.90 37.02 0.29 -4.10 16 22 H 0.50 5.30 8.96 -347.53 -3.11 2.19 16 23 N -0.27 -8.12 12.41 -52.32 -0.65 -8.77 16 24 C 0.17 8.40 5.71 38.22 0.22 8.61 16 25 C -0.21 -10.10 8.96 22.41 0.20 -9.90 16 26 C -0.12 -4.88 10.04 22.25 0.22 -4.65 16 27 C -0.17 -6.11 10.04 22.30 0.22 -5.89 16 28 C -0.12 -4.72 10.04 22.25 0.22 -4.49 16 29 C -0.12 -5.75 7.86 22.41 0.18 -5.58 16 30 H 0.28 12.97 8.32 -92.71 -0.77 12.20 16 31 H 0.14 4.81 8.05 -2.39 -0.02 4.79 16 32 H 0.13 4.75 6.72 -2.39 -0.02 4.74 16 33 H 0.21 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.21 4.21 8.06 -2.91 -0.02 4.18 16 35 H 0.14 7.48 4.75 -42.79 -0.20 7.28 16 36 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 38 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.11 5.38 6.03 -2.91 -0.02 5.36 16 Total: -1.00 -70.60 342.81 2.55 -68.05 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -2.16 Total: 35.85 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 7.44 Total: 11.09 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -4.72 Total: -123.23 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.04 Total: -29.71 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Total: -70.60 2.55 -68.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 261.679 kcal (2) G-P(sol) polarization free energy of solvation -70.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds