Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86806 * 120.00367 * 2 1 4 4 H 1.48498 * 109.47298 * 240.00445 * 3 2 1 5 5 H 1.48498 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46780 * 120.00556 * 3 2 1 7 7 C 1.39904 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00408 * 175.55786 * 7 2 1 9 9 C 1.41154 * 119.99988 * 355.55284 * 7 2 1 10 10 C 1.40871 * 120.16632 * 214.78731 * 9 7 2 11 11 C 1.36374 * 119.83050 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16568 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83133 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99893 * 35.28615 * 13 12 11 15 15 O 1.21278 * 120.00227 * 355.70408 * 14 13 12 16 16 C 1.50697 * 119.99575 * 175.70904 * 14 13 12 17 17 N 1.46506 * 109.46829 * 179.97438 * 16 14 13 18 18 C 1.36856 * 126.49689 * 264.68709 * 17 16 14 19 19 C 1.34860 * 107.01945 * 179.84432 * 18 17 16 20 20 N 1.33785 * 108.37786 * 0.42786 * 19 18 17 21 21 C 1.31408 * 109.25611 * 359.72808 * 20 19 18 22 22 C 1.48016 * 125.83461 * 180.02562 * 21 20 19 23 23 N 1.34171 * 126.69653 * 179.97438 * 22 21 20 24 24 N 1.28981 * 107.25391 * 180.02562 * 23 22 21 25 25 N 1.28727 * 108.98337 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.32049 * 180.02562 * 25 24 23 27 27 N 1.28866 * 109.35671 * 359.73278 * 25 24 23 28 28 C 1.39475 * 120.33455 * 0.24823 * 12 11 10 29 29 C 1.36376 * 120.16802 * 359.44817 * 28 12 11 30 30 H 0.97005 * 119.99672 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.08325 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91770 * 179.97438 * 11 10 9 33 33 H 0.96997 * 119.99661 * 215.28686 * 13 12 11 34 34 H 1.09003 * 109.47433 * 59.99845 * 16 14 13 35 35 H 1.08997 * 109.47236 * 299.99730 * 16 14 13 36 36 H 1.07999 * 126.48985 * 0.02562 * 18 17 16 37 37 H 1.08001 * 125.80955 * 180.19617 * 19 18 17 38 38 H 1.08000 * 119.91612 * 179.72942 * 28 12 11 39 39 H 1.08004 * 120.08387 * 180.25046 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0967 1.6962 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2131 -0.0730 9 6 1.3056 -2.4322 0.0937 10 6 1.8648 -3.5186 0.7947 11 6 1.1803 -4.6949 0.8811 12 6 -0.0703 -4.8241 0.2769 13 7 -0.7629 -6.0285 0.3690 14 6 -0.6811 -6.7688 1.4923 15 8 0.0561 -6.4259 2.3922 16 6 -1.5058 -8.0225 1.6300 17 7 -1.2394 -8.6417 2.9308 18 6 -0.3437 -9.6442 3.1870 19 6 -0.4156 -9.9100 4.5072 20 7 -1.3346 -9.1036 5.0503 21 6 -1.8415 -8.3323 4.1150 22 6 -2.8868 -7.3032 4.3127 23 7 -3.4160 -6.5066 3.3715 24 7 -4.2893 -5.7560 3.9524 25 7 -4.3266 -6.0494 5.2052 26 1 -4.9020 -5.6284 5.8629 27 7 -3.4845 -6.9942 5.4479 28 6 -0.6279 -3.7548 -0.4237 29 6 0.0419 -2.5703 -0.5134 30 1 -0.4850 0.8401 0.0004 31 1 2.8336 -3.4204 1.2619 32 1 1.6079 -5.5289 1.4178 33 1 -1.3043 -6.3347 -0.3754 34 1 -1.2419 -8.7202 0.8351 35 1 -2.5639 -7.7714 1.5566 36 1 0.3011 -10.1285 2.4686 37 1 0.1666 -10.6506 5.0353 38 1 -1.5947 -3.8636 -0.8926 39 1 -0.3930 -1.7418 -1.0528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826382699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = 166.011381 kcal Electronic energy + Delta-G solvation = -28032.356241 eV Core-core repulsion = 23978.706576 eV Total energy + Delta-G solvation = -4053.649665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.60873 -43.13701 -41.14835 -39.09073 -36.23859 -35.65155 -35.05284 -34.69508 -34.52136 -31.52473 -31.06560 -30.55510 -29.04310 -26.61620 -25.90267 -25.42487 -23.58948 -22.84795 -22.28916 -21.86744 -21.29629 -20.13983 -19.30829 -18.87974 -18.47218 -18.15025 -17.75897 -17.01579 -16.57765 -16.13226 -16.10840 -15.73545 -15.43208 -15.03174 -14.88232 -14.81968 -14.43183 -14.32151 -14.04402 -13.66645 -13.54493 -13.32063 -13.24732 -12.85490 -12.77110 -12.56875 -12.50771 -12.31759 -12.13954 -11.85389 -11.43410 -11.33438 -11.19678 -11.18595 -10.74394 -10.49022 -9.47985 -9.37963 -8.75205 -8.52047 -6.35121 -0.18224 0.20291 0.76621 1.02684 1.12305 1.32503 1.37822 1.43113 1.49558 1.59675 1.70521 2.17504 2.21936 2.26515 2.45311 2.79346 2.97340 3.61925 3.68949 3.76128 3.87957 3.95512 4.10729 4.32466 4.39139 4.46972 4.50533 4.61332 4.91644 5.11332 5.12506 5.12895 5.31166 5.41271 5.49095 5.66821 5.67749 5.81890 5.89332 6.00863 6.11813 6.37673 6.63063 6.67871 6.81161 6.95061 6.97996 6.98721 7.30878 8.40343 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002859 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.422672 B = 9791.102657 C =10676.643222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.072 0.928 9 C 0.069 3.931 10 C -0.224 4.224 11 C -0.096 4.096 12 C 0.024 3.976 13 N -0.634 5.634 14 C 0.491 3.509 15 O -0.566 6.566 16 C 0.090 3.910 17 N -0.420 5.420 18 C -0.001 4.001 19 C -0.042 4.042 20 N -0.472 5.472 21 C 0.244 3.756 22 C 0.244 3.756 23 N -0.285 5.285 24 N -0.047 5.047 25 N -0.195 5.195 26 H 0.497 0.503 27 N -0.271 5.271 28 C -0.116 4.116 29 C -0.159 4.159 30 H 0.285 0.715 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.422 0.578 34 H 0.181 0.819 35 H 0.142 0.858 36 H 0.229 0.771 37 H 0.208 0.792 38 H 0.127 0.873 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 -17.171 2.428 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.531 4.531 8 H 0.090 0.910 9 C 0.067 3.933 10 C -0.244 4.244 11 C -0.116 4.116 12 C -0.069 4.069 13 N -0.279 5.279 14 C 0.278 3.722 15 O -0.444 6.444 16 C -0.035 4.035 17 N -0.103 5.103 18 C -0.136 4.136 19 C -0.192 4.192 20 N -0.193 5.193 21 C -0.015 4.015 22 C -0.038 4.038 23 N -0.159 5.159 24 N -0.042 5.042 25 N -0.047 5.047 26 H 0.357 0.643 27 N -0.126 5.126 28 C -0.136 4.136 29 C -0.179 4.179 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.261 0.739 34 H 0.199 0.801 35 H 0.159 0.841 36 H 0.245 0.755 37 H 0.225 0.775 38 H 0.145 0.855 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.761 -16.229 3.553 19.269 hybrid contribution 0.436 0.964 -0.247 1.087 sum -9.325 -15.265 3.306 18.191 Atomic orbital electron populations 1.69819 1.08540 1.30016 1.38442 1.26724 0.95816 1.04253 0.91566 0.85175 0.78539 0.75647 0.79832 1.18072 1.19163 1.19183 1.19715 0.94848 0.91443 1.47128 0.90996 1.18016 0.93400 0.92582 0.89332 1.20918 1.01610 0.95722 1.06189 1.20478 0.93856 0.97311 0.99907 1.17236 0.93243 0.87348 1.09084 1.42695 1.48423 1.19596 1.17207 1.21243 0.82984 0.86227 0.81739 1.90754 1.40743 1.71658 1.41242 1.22068 1.02796 0.93858 0.84791 1.45061 1.29901 1.27757 1.07578 1.23693 0.96449 0.93303 1.00151 1.22957 1.00642 1.03089 0.92472 1.70303 1.11643 1.07249 1.30132 1.18642 0.99642 0.99872 0.83367 1.21830 0.98165 0.97617 0.86144 1.76048 1.07419 1.05921 1.26555 1.78837 1.14717 1.18046 0.92555 1.47812 1.26256 1.22018 1.08635 0.64290 1.75044 1.06121 1.06889 1.24497 1.20577 0.99279 0.92032 1.01686 1.21178 0.97426 0.96531 1.02791 0.90465 0.88986 0.87557 0.73948 0.80140 0.84055 0.75462 0.77538 0.85521 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.75 10.60 21.82 0.23 -44.52 16 2 C 0.03 1.47 5.42 85.24 0.46 1.93 16 3 Si 0.99 39.55 29.56 68.60 2.03 41.57 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.50 -27.85 9.02 23.39 0.21 -27.64 16 8 H 0.07 3.87 7.85 -2.91 -0.02 3.84 16 9 C 0.07 3.84 5.55 -21.28 -0.12 3.72 16 10 C -0.22 -11.83 9.74 22.48 0.22 -11.61 16 11 C -0.10 -4.59 8.61 22.14 0.19 -4.40 16 12 C 0.02 1.04 6.31 38.56 0.24 1.28 16 13 N -0.63 -19.19 5.30 -303.11 -1.61 -20.79 16 14 C 0.49 15.04 7.73 87.66 0.68 15.71 16 15 O -0.57 -23.76 13.85 -3.02 -0.04 -23.80 16 16 C 0.09 1.72 6.10 85.63 0.52 2.24 16 17 N -0.42 -9.97 2.28 -519.50 -1.18 -11.16 16 18 C 0.00 -0.01 11.58 83.13 0.96 0.95 16 19 C -0.04 -0.91 11.84 83.62 0.99 0.08 16 20 N -0.47 -14.22 11.27 -189.32 -2.13 -16.36 16 21 C 0.24 7.36 7.86 136.61 1.07 8.44 16 22 C 0.24 7.45 8.14 137.16 1.12 8.57 16 23 N -0.29 -8.47 10.73 -52.37 -0.56 -9.03 16 24 N -0.05 -1.21 13.47 37.02 0.50 -0.71 16 25 N -0.20 -3.95 7.90 37.02 0.29 -3.66 16 26 H 0.50 4.58 8.96 -347.51 -3.12 1.46 16 27 N -0.27 -7.37 12.41 -52.32 -0.65 -8.02 16 28 C -0.12 -5.10 9.90 22.13 0.22 -4.88 16 29 C -0.16 -8.30 8.61 22.48 0.19 -8.11 16 30 H 0.28 13.81 8.30 -92.70 -0.77 13.04 16 31 H 0.09 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.11 5.06 6.22 -2.91 -0.02 5.04 16 33 H 0.42 8.60 8.82 -92.71 -0.82 7.78 16 34 H 0.18 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.14 2.50 6.79 -2.39 -0.02 2.48 16 36 H 0.23 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 39 H 0.12 6.44 6.13 -2.91 -0.02 6.43 16 Total: -1.00 -84.08 348.53 1.07 -83.01 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -2.77 Total: 27.19 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 6.96 Total: -13.73 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -5.11 Total: -114.25 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.04 Total: -23.80 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Total: -84.08 1.07 -83.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.024 kcal (2) G-P(sol) polarization free energy of solvation -84.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds