Wall clock time and date at job start Tue Mar 31 2020 22:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48500 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47131 * 299.99862 * 3 2 1 6 6 H 1.48495 * 109.46928 * 59.99918 * 3 2 1 7 7 C 1.39942 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00304 * 163.65195 * 7 2 1 9 9 C 1.41400 * 119.99822 * 343.64617 * 7 2 1 10 10 C 1.40731 * 120.24352 * 334.06297 * 9 7 2 11 11 C 1.37595 * 119.74528 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24752 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50061 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24780 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.12435 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.47029 * 264.97384 * 15 14 13 17 17 O 1.20822 * 119.99845 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99909 * 180.02562 * 16 15 14 19 19 N 1.39966 * 125.97472 * 0.02676 * 18 16 15 20 20 C 1.30485 * 109.02959 * 180.02562 * 19 18 16 21 21 C 1.41009 * 108.54525 * 359.97438 * 20 19 18 22 22 C 1.48337 * 126.33045 * 179.97438 * 21 20 19 23 23 N 1.33721 * 126.31402 * 180.02562 * 22 21 20 24 24 N 1.28568 * 109.84588 * 179.97438 * 23 22 21 25 25 N 1.28920 * 109.73355 * 359.97438 * 24 23 22 26 26 H 0.96999 * 126.42517 * 180.02562 * 25 24 23 27 27 N 1.32034 * 126.31656 * 359.69398 * 22 21 20 28 28 C 1.36632 * 125.97027 * 179.71865 * 18 16 15 29 29 N 1.38495 * 126.48397 * 359.97438 * 28 18 16 30 30 H 0.96998 * 120.00158 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.12885 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.87694 * 180.02562 * 11 10 9 33 33 H 1.08001 * 119.75034 * 179.72190 * 12 11 10 34 34 H 1.07998 * 119.87251 * 180.02562 * 13 12 11 35 35 H 1.09001 * 109.47414 * 24.97080 * 15 14 13 36 36 H 1.09001 * 109.47136 * 144.97447 * 15 14 13 37 37 H 1.07997 * 125.72352 * 179.97438 * 20 19 18 38 38 H 0.96998 * 120.00742 * 0.02562 * 29 28 18 39 39 H 0.97010 * 119.99996 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0553 -1.2307 -0.2638 9 6 1.3439 -2.4118 0.3437 10 6 0.2130 -2.3811 1.1807 11 6 -0.4250 -3.5550 1.5096 12 6 0.0427 -4.7651 1.0201 13 6 1.1557 -4.8072 0.1949 14 6 1.8096 -3.6454 -0.1471 15 6 3.0190 -3.6944 -1.0449 16 6 4.2687 -3.7237 -0.2030 17 8 4.1856 -3.7070 1.0022 18 7 5.4789 -3.7685 -0.7947 19 7 5.7198 -3.7916 -2.1732 20 6 7.0075 -3.8351 -2.3795 21 6 7.6617 -3.8414 -1.1304 22 6 9.1274 -3.8861 -0.9062 23 7 9.7475 -3.8925 0.2785 24 7 11.0206 -3.9361 0.1046 25 7 11.2871 -3.9599 -1.1566 26 1 12.1693 -3.9938 -1.5583 27 7 10.0601 -3.9329 -1.8395 28 6 6.6852 -3.7933 -0.1535 29 7 6.8903 -3.7768 1.2160 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1522 -1.4399 1.5641 32 1 -1.2933 -3.5339 2.1515 33 1 -0.4615 -5.6821 1.2870 34 1 1.5111 -5.7553 -0.1810 35 1 2.9765 -4.5910 -1.6632 36 1 3.0325 -2.8120 -1.6847 37 1 7.4910 -3.8617 -3.3448 38 1 6.1318 -3.7449 1.8198 39 1 7.7927 -3.7970 1.5716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826382750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:55 Heat of formation + Delta-G solvation = 185.160640 kcal Electronic energy + Delta-G solvation = -28084.866659 eV Core-core repulsion = 24032.047369 eV Total energy + Delta-G solvation = -4052.819290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.27005 -41.79744 -39.00091 -37.38318 -35.05626 -33.97972 -33.69537 -33.11349 -32.25569 -31.46833 -29.53856 -28.74636 -27.18764 -25.23397 -24.72259 -23.88939 -22.83189 -21.02487 -20.81628 -20.29731 -19.22033 -18.89752 -17.49270 -17.23218 -16.68270 -16.47022 -16.12680 -15.91847 -15.41133 -15.03156 -14.58919 -14.26786 -14.07648 -13.99403 -13.57497 -13.32360 -13.18298 -12.64417 -12.41425 -11.83557 -11.64519 -11.45607 -11.38945 -11.26096 -11.16247 -11.11452 -11.05610 -10.94703 -10.82309 -10.78445 -10.45071 -10.04146 -9.56536 -9.47815 -9.43852 -9.22789 -7.89932 -7.41572 -7.38818 -6.80772 -4.42999 0.70680 1.20438 1.83590 1.91813 2.19535 2.74243 2.93948 2.96878 3.04942 3.07527 3.09965 3.21052 3.62669 3.72975 3.89449 4.02525 4.43700 4.60349 4.92708 5.16841 5.25713 5.53852 5.58975 5.69393 5.91661 5.97392 6.07364 6.22483 6.34564 6.40215 6.44567 6.60867 6.76842 7.01600 7.05107 7.21511 7.33763 7.36073 7.55818 7.63166 7.83724 7.96903 7.97457 8.02605 8.06052 8.23002 8.56861 8.83097 8.92291 10.13237 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003198 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.689095 B = 8754.156740 C = 9861.458595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.079 3.921 3 Si 0.902 3.098 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.457 4.457 8 H 0.072 0.928 9 C 0.130 3.870 10 C -0.158 4.158 11 C -0.103 4.103 12 C -0.240 4.240 13 C -0.076 4.076 14 C -0.197 4.197 15 C -0.053 4.053 16 C 0.554 3.446 17 O -0.469 6.469 18 N -0.386 5.386 19 N -0.280 5.280 20 C 0.148 3.852 21 C -0.273 4.273 22 C 0.315 3.685 23 N -0.323 5.323 24 N 0.010 4.990 25 N -0.303 5.303 26 H 0.468 0.532 27 N -0.307 5.307 28 C 0.448 3.552 29 N -0.811 5.811 30 H 0.281 0.719 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.199 0.801 38 H 0.421 0.579 39 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.763 -5.290 -3.574 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.090 0.910 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.122 4.122 12 C -0.259 4.259 13 C -0.095 4.095 14 C -0.199 4.199 15 C -0.092 4.092 16 C 0.347 3.653 17 O -0.334 6.334 18 N -0.190 5.190 19 N -0.098 5.098 20 C -0.047 4.047 21 C -0.294 4.294 22 C 0.035 3.965 23 N -0.203 5.203 24 N 0.014 4.986 25 N -0.150 5.150 26 H 0.322 0.678 27 N -0.151 5.151 28 C 0.216 3.784 29 N -0.359 5.359 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.215 0.785 38 H 0.255 0.745 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 15.651 -5.093 -2.986 16.727 hybrid contribution 1.531 0.804 0.217 1.743 sum 17.182 -4.288 -2.769 17.924 Atomic orbital electron populations 1.69815 1.07474 1.29176 1.35043 1.25863 0.94701 1.01181 0.92173 0.86352 0.81024 0.81266 0.78712 1.18563 1.19788 1.19612 1.19487 0.97169 0.91064 1.40968 0.90973 1.17348 0.90832 0.91159 0.87915 1.21302 0.98915 0.96750 1.00784 1.20707 0.98525 0.93424 0.99534 1.20324 1.01526 0.96258 1.07784 1.20330 0.95823 0.95533 0.97793 1.19066 0.99788 0.94262 1.06825 1.20216 0.87311 1.04726 0.96922 1.21962 0.82524 0.71909 0.88926 1.90529 1.84691 1.43327 1.14855 1.47954 1.04544 1.60462 1.06089 1.77481 1.16437 1.26713 0.89189 1.23851 0.90024 0.92899 0.97892 1.16414 0.85090 1.35468 0.92477 1.22420 0.93826 0.94405 0.85825 1.75234 0.97258 1.23204 1.24562 1.78241 1.10371 1.09047 1.00972 1.50924 1.10473 1.50930 1.02681 0.67847 1.78907 0.89026 1.28193 1.18967 1.18637 0.86458 0.87914 0.85348 1.42401 1.14014 1.78240 1.01269 0.90839 0.86443 0.89441 0.89498 0.89556 0.88932 0.86982 0.78453 0.74458 0.74009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.94 10.97 55.55 0.61 -19.33 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.90 18.69 29.59 -169.99 -5.03 13.66 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -11.73 8.14 -37.74 -0.31 -12.03 16 8 H 0.07 1.82 6.67 -52.49 -0.35 1.47 16 9 C 0.13 3.35 5.56 -106.83 -0.59 2.75 16 10 C -0.16 -4.08 8.68 -38.88 -0.34 -4.42 16 11 C -0.10 -2.43 10.02 -39.66 -0.40 -2.82 16 12 C -0.24 -5.36 10.05 -39.29 -0.39 -5.75 16 13 C -0.08 -1.69 9.66 -39.66 -0.38 -2.08 16 14 C -0.20 -4.57 4.43 -103.92 -0.46 -5.03 16 15 C -0.05 -1.04 4.77 -29.04 -0.14 -1.17 16 16 C 0.55 10.63 7.49 -10.98 -0.08 10.55 16 17 O -0.47 -9.86 14.26 5.95 0.08 -9.78 16 18 N -0.39 -6.46 3.65 -10.97 -0.04 -6.50 16 19 N -0.28 -4.23 11.97 30.81 0.37 -3.86 16 20 C 0.15 1.83 11.97 -17.07 -0.20 1.63 16 21 C -0.27 -3.71 6.15 -104.70 -0.64 -4.35 16 22 C 0.32 4.01 8.14 -156.43 -1.27 2.73 16 23 N -0.32 -4.04 10.70 32.11 0.34 -3.70 16 24 N 0.01 0.11 13.42 60.35 0.81 0.92 16 25 N -0.30 -2.48 8.44 60.35 0.51 -1.97 16 26 H 0.47 1.59 8.96 -331.92 -2.98 -1.38 16 27 N -0.31 -3.36 12.90 32.13 0.41 -2.95 16 28 C 0.45 6.78 7.93 -152.11 -1.21 5.57 16 29 N -0.81 -10.97 9.01 31.61 0.28 -10.68 16 30 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 31 H 0.12 3.12 6.22 -52.49 -0.33 2.79 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.09 1.59 8.05 -51.93 -0.42 1.18 16 36 H 0.11 2.26 7.06 -51.93 -0.37 1.89 16 37 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.42 5.99 6.69 -40.82 -0.27 5.72 16 39 H 0.43 5.03 7.22 -40.82 -0.29 4.74 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -30.33 345.81 -8.78 -39.11 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.83 Total: 12.42 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -6.51 Total: -12.56 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 3.30 Total: -48.06 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.33 -8.78 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.272 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds