Wall clock time and date at job start Tue Mar 31 2020 22:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48500 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47131 * 299.99862 * 3 2 1 6 6 H 1.48495 * 109.46928 * 59.99918 * 3 2 1 7 7 C 1.39942 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00304 * 163.65195 * 7 2 1 9 9 C 1.41400 * 119.99822 * 343.64617 * 7 2 1 10 10 C 1.40731 * 120.24352 * 334.06297 * 9 7 2 11 11 C 1.37595 * 119.74528 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24752 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50061 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24780 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.12435 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.47029 * 264.97384 * 15 14 13 17 17 O 1.20822 * 119.99845 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99909 * 180.02562 * 16 15 14 19 19 N 1.39966 * 125.97472 * 0.02676 * 18 16 15 20 20 C 1.30485 * 109.02959 * 180.02562 * 19 18 16 21 21 C 1.41009 * 108.54525 * 359.97438 * 20 19 18 22 22 C 1.48337 * 126.33045 * 179.97438 * 21 20 19 23 23 N 1.33721 * 126.31402 * 180.02562 * 22 21 20 24 24 N 1.28568 * 109.84588 * 179.97438 * 23 22 21 25 25 N 1.28920 * 109.73355 * 359.97438 * 24 23 22 26 26 H 0.96999 * 126.42517 * 180.02562 * 25 24 23 27 27 N 1.32034 * 126.31656 * 359.69398 * 22 21 20 28 28 C 1.36632 * 125.97027 * 179.71865 * 18 16 15 29 29 N 1.38495 * 126.48397 * 359.97438 * 28 18 16 30 30 H 0.96998 * 120.00158 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.12885 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.87694 * 180.02562 * 11 10 9 33 33 H 1.08001 * 119.75034 * 179.72190 * 12 11 10 34 34 H 1.07998 * 119.87251 * 180.02562 * 13 12 11 35 35 H 1.09001 * 109.47414 * 24.97080 * 15 14 13 36 36 H 1.09001 * 109.47136 * 144.97447 * 15 14 13 37 37 H 1.07997 * 125.72352 * 179.97438 * 20 19 18 38 38 H 0.96998 * 120.00742 * 0.02562 * 29 28 18 39 39 H 0.97010 * 119.99996 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0553 -1.2307 -0.2638 9 6 1.3439 -2.4118 0.3437 10 6 0.2130 -2.3811 1.1807 11 6 -0.4250 -3.5550 1.5096 12 6 0.0427 -4.7651 1.0201 13 6 1.1557 -4.8072 0.1949 14 6 1.8096 -3.6454 -0.1471 15 6 3.0190 -3.6944 -1.0449 16 6 4.2687 -3.7237 -0.2030 17 8 4.1856 -3.7070 1.0022 18 7 5.4789 -3.7685 -0.7947 19 7 5.7198 -3.7916 -2.1732 20 6 7.0075 -3.8351 -2.3795 21 6 7.6617 -3.8414 -1.1304 22 6 9.1274 -3.8861 -0.9062 23 7 9.7475 -3.8925 0.2785 24 7 11.0206 -3.9361 0.1046 25 7 11.2871 -3.9599 -1.1566 26 1 12.1693 -3.9938 -1.5583 27 7 10.0601 -3.9329 -1.8395 28 6 6.6852 -3.7933 -0.1535 29 7 6.8903 -3.7768 1.2160 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1522 -1.4399 1.5641 32 1 -1.2933 -3.5339 2.1515 33 1 -0.4615 -5.6821 1.2870 34 1 1.5111 -5.7553 -0.1810 35 1 2.9765 -4.5910 -1.6632 36 1 3.0325 -2.8120 -1.6847 37 1 7.4910 -3.8617 -3.3448 38 1 6.1318 -3.7449 1.8198 39 1 7.7927 -3.7970 1.5716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826382750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:54 Heat of formation + Delta-G solvation = 165.758566 kcal Electronic energy + Delta-G solvation = -28085.707996 eV Core-core repulsion = 24032.047369 eV Total energy + Delta-G solvation = -4053.660627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.13786 -42.99237 -40.47224 -39.10399 -36.13568 -35.53429 -34.96770 -34.04177 -33.66938 -32.83621 -31.37758 -29.82555 -28.80549 -27.02497 -25.59367 -25.14893 -23.85892 -22.85211 -22.08514 -21.57104 -20.69018 -19.77696 -19.08875 -18.80084 -17.68776 -17.52152 -17.40970 -17.19825 -17.01924 -16.38318 -15.98415 -15.65298 -15.64605 -15.27401 -15.03535 -14.71819 -14.40203 -14.34256 -13.58108 -13.43004 -13.27013 -12.96843 -12.86566 -12.78467 -12.55870 -12.51573 -12.29431 -12.15582 -12.05018 -11.87071 -11.79482 -11.54142 -11.35506 -11.24057 -11.05793 -10.64061 -9.25544 -9.22721 -8.96058 -8.63377 -6.33777 -0.23612 0.08752 0.76184 0.85638 1.01885 1.17182 1.34276 1.38464 1.46185 1.49751 1.66802 2.03570 2.17161 2.50555 2.74392 2.81054 3.02157 3.36425 3.73554 3.86793 3.97730 4.28600 4.32990 4.34938 4.55709 4.56709 4.63604 4.69705 4.78897 4.97100 5.04909 5.16654 5.34832 5.50824 5.52319 5.73826 5.79333 5.96905 6.00767 6.12036 6.18199 6.21017 6.38282 6.44076 6.70260 6.72633 6.95134 7.06696 7.14335 8.33189 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003198 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.689095 B = 8754.156740 C = 9861.458595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.041 3.959 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.483 4.483 8 H 0.066 0.934 9 C 0.100 3.900 10 C -0.190 4.190 11 C -0.112 4.112 12 C -0.240 4.240 13 C -0.085 4.085 14 C -0.200 4.200 15 C -0.048 4.048 16 C 0.559 3.441 17 O -0.498 6.498 18 N -0.395 5.395 19 N -0.303 5.303 20 C 0.165 3.835 21 C -0.268 4.268 22 C 0.302 3.698 23 N -0.344 5.344 24 N 0.008 4.992 25 N -0.273 5.273 26 H 0.488 0.512 27 N -0.302 5.302 28 C 0.430 3.570 29 N -0.805 5.805 30 H 0.287 0.713 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.238 0.762 38 H 0.417 0.583 39 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.948 -6.080 -4.810 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.513 4.513 8 H 0.084 0.916 9 C 0.098 3.902 10 C -0.209 4.209 11 C -0.130 4.130 12 C -0.259 4.259 13 C -0.103 4.103 14 C -0.201 4.201 15 C -0.087 4.087 16 C 0.352 3.648 17 O -0.366 6.366 18 N -0.199 5.199 19 N -0.121 5.121 20 C -0.028 4.028 21 C -0.290 4.290 22 C 0.021 3.979 23 N -0.222 5.222 24 N 0.012 4.988 25 N -0.125 5.125 26 H 0.347 0.653 27 N -0.147 5.147 28 C 0.199 3.801 29 N -0.353 5.353 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.254 0.746 38 H 0.251 0.749 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 17.889 -5.896 -4.236 19.306 hybrid contribution 1.033 0.909 0.533 1.476 sum 18.922 -4.987 -3.703 19.915 Atomic orbital electron populations 1.69863 1.08636 1.30280 1.35884 1.26574 0.95392 1.03935 0.91538 0.85388 0.79159 0.77427 0.79187 1.19168 1.18520 1.19012 1.19592 0.96994 0.92095 1.42570 0.91615 1.17687 0.91428 0.92465 0.88649 1.21301 1.00299 0.96953 1.02385 1.20981 0.99019 0.93271 0.99718 1.20734 1.01392 0.96890 1.06841 1.20740 0.95569 0.96517 0.97454 1.19437 1.00601 0.93808 1.06295 1.20131 0.86663 1.05495 0.96450 1.21562 0.83288 0.71615 0.88354 1.90513 1.85406 1.44934 1.15752 1.47651 1.04263 1.61001 1.06971 1.77516 1.17938 1.28563 0.88105 1.24497 0.89054 0.90263 0.99018 1.16533 0.85523 1.34487 0.92413 1.22297 0.93636 0.95640 0.86314 1.75223 0.97899 1.24122 1.24947 1.78208 1.09716 1.09234 1.01633 1.50955 1.10915 1.48583 1.02023 0.65336 1.78851 0.89464 1.27504 1.18857 1.18902 0.86281 0.88848 0.86064 1.42366 1.14213 1.77879 1.00881 0.90200 0.88363 0.87460 0.86464 0.86435 0.86408 0.87906 0.74639 0.74946 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.79 10.97 21.83 0.24 -42.55 16 2 C 0.04 2.07 5.16 85.26 0.44 2.51 16 3 Si 0.97 39.13 29.59 68.60 2.03 41.16 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.48 -25.68 8.14 23.46 0.19 -25.49 16 8 H 0.07 3.45 6.67 -2.91 -0.02 3.43 16 9 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 10 C -0.19 -10.13 8.68 22.73 0.20 -9.94 16 11 C -0.11 -5.26 10.02 22.22 0.22 -5.04 16 12 C -0.24 -10.39 10.05 22.46 0.23 -10.17 16 13 C -0.08 -3.65 9.66 22.22 0.21 -3.44 16 14 C -0.20 -9.31 4.43 -19.41 -0.09 -9.39 16 15 C -0.05 -1.91 4.77 29.10 0.14 -1.77 16 16 C 0.56 21.61 7.49 87.66 0.66 22.26 16 17 O -0.50 -21.42 14.26 -1.64 -0.02 -21.44 16 18 N -0.39 -13.07 3.65 -307.21 -1.12 -14.19 16 19 N -0.30 -8.76 11.97 -56.45 -0.68 -9.43 16 20 C 0.17 3.73 11.97 85.57 1.02 4.75 16 21 C -0.27 -6.85 6.15 -19.92 -0.12 -6.97 16 22 C 0.30 7.05 8.14 137.37 1.12 8.16 16 23 N -0.34 -8.02 10.70 -52.31 -0.56 -8.58 16 24 N 0.01 0.15 13.42 37.02 0.50 0.65 16 25 N -0.27 -3.65 8.44 37.02 0.31 -3.34 16 26 H 0.49 1.70 8.96 -340.35 -3.05 -1.35 16 27 N -0.30 -5.74 12.90 -52.27 -0.67 -6.41 16 28 C 0.43 12.77 7.93 131.70 1.04 13.82 16 29 N -0.81 -21.83 9.01 -53.91 -0.49 -22.31 16 30 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 31 H 0.10 5.50 6.22 -2.91 -0.02 5.48 16 32 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 33 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.12 3.93 8.05 -2.39 -0.02 3.91 16 36 H 0.10 4.24 7.06 -2.39 -0.02 4.22 16 37 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.42 12.17 6.69 -92.71 -0.62 11.55 16 39 H 0.43 10.15 7.22 -92.70 -0.67 9.48 16 Total: -1.00 -66.95 345.81 1.53 -65.42 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -3.16 Total: 36.52 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.15 Total: -15.49 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -2.47 Total: -106.17 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.02 Total: -21.44 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -66.95 1.53 -65.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.179 kcal (2) G-P(sol) polarization free energy of solvation -66.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds