Wall clock time and date at job start Tue Mar 31 2020 22:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 107.16744 * 2 1 4 4 O 1.42094 * 113.54289 * 233.79870 * 2 1 3 5 5 N 1.49359 * 107.51993 * 115.33702 * 2 1 3 6 6 S 1.65608 * 119.99742 * 64.89599 * 5 2 1 7 7 O 1.42099 * 106.40241 * 293.53600 * 6 5 2 8 8 O 1.42097 * 106.39895 * 66.45675 * 6 5 2 9 9 N 1.65596 * 107.21450 * 179.97438 * 6 5 2 10 10 C 1.47085 * 120.87974 * 269.72071 * 9 6 5 11 11 C 1.53697 * 108.27513 * 128.76183 * 10 9 6 12 12 N 1.46894 * 109.26100 * 54.08023 * 11 10 9 13 13 C 1.46899 * 110.99915 * 172.61157 * 12 11 10 14 14 C 1.52999 * 109.47013 * 294.29934 * 13 12 11 15 15 C 1.50705 * 109.47349 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99837 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00231 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99956 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99830 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46925 * 60.00179 * 19 17 15 21 21 H 1.48505 * 109.46662 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47244 * 299.99783 * 19 17 15 23 23 C 1.46904 * 111.26757 * 296.75658 * 12 11 10 24 24 C 1.47080 * 120.88292 * 90.00439 * 9 6 5 25 25 H 1.09007 * 109.46956 * 306.19541 * 1 2 3 26 26 H 1.08997 * 109.47175 * 66.19415 * 1 2 3 27 27 H 1.09001 * 109.47187 * 186.20027 * 1 2 3 28 28 H 1.09005 * 109.47075 * 175.33592 * 3 2 1 29 29 H 1.08996 * 109.47126 * 295.33789 * 3 2 1 30 30 H 1.09006 * 109.47086 * 55.34208 * 3 2 1 31 31 H 1.09003 * 109.63026 * 248.52257 * 10 9 6 32 32 H 1.08994 * 109.62789 * 9.10266 * 10 9 6 33 33 H 1.09004 * 109.64256 * 294.07501 * 11 10 9 34 34 H 1.09003 * 109.42096 * 173.95263 * 11 10 9 35 35 H 1.08999 * 109.47578 * 54.30078 * 13 12 11 36 36 H 1.09005 * 109.46866 * 174.29983 * 13 12 11 37 37 H 1.08999 * 109.47357 * 299.99994 * 14 13 12 38 38 H 1.08997 * 109.47013 * 60.00254 * 14 13 12 39 39 H 0.96996 * 119.99940 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.49178 * 303.14577 * 23 12 11 41 41 H 1.09001 * 109.49247 * 183.06134 * 23 12 11 42 42 H 1.08994 * 109.62731 * 350.88738 * 24 9 6 43 43 H 1.09000 * 109.63280 * 111.47578 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7332 0.0000 4 8 2.3816 -0.7694 -1.0512 5 7 2.2637 -0.6095 1.2873 6 16 1.9326 -2.1996 1.6107 7 8 0.5212 -2.2967 1.7435 8 8 2.6795 -2.9635 0.6737 9 7 2.5676 -2.5390 3.1019 10 6 3.9449 -3.0363 3.2406 11 6 4.6709 -2.1625 4.2758 12 7 3.8918 -2.1378 5.5208 13 6 4.6331 -1.4594 6.5923 14 6 5.8766 -2.2765 6.9485 15 6 6.6368 -1.5809 8.0482 16 1 6.2700 -0.6489 8.4524 17 6 7.8013 -2.1337 8.5377 18 7 8.2483 -3.2682 8.0452 19 14 8.7439 -1.2710 9.9003 20 1 7.8759 -1.1435 11.0985 21 1 9.9508 -2.0643 10.2461 22 1 9.1539 0.0799 9.4400 23 6 2.5772 -1.5153 5.3145 24 6 1.7673 -2.3569 4.3224 25 1 -0.3633 0.6069 0.8294 26 1 -0.3633 0.4148 -0.9402 27 1 -0.3633 -1.0217 0.1110 28 1 3.4354 1.7780 0.0836 29 1 2.0365 2.2101 -0.9288 30 1 1.8983 2.2528 0.8454 31 1 3.9278 -4.0723 3.5791 32 1 4.4564 -2.9703 2.2804 33 1 4.7741 -1.1478 3.8910 34 1 5.6587 -2.5792 4.4729 35 1 4.9344 -0.4679 6.2544 36 1 3.9959 -1.3654 7.4718 37 1 5.5754 -3.2680 7.2866 38 1 6.5137 -2.3704 6.0692 39 1 9.0673 -3.6572 8.3898 40 1 2.7096 -0.5098 4.9153 41 1 2.0464 -1.4629 6.2651 42 1 0.8387 -1.8415 4.0778 43 1 1.5450 -3.3289 4.7629 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846964444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:45 Heat of formation + Delta-G solvation = -50.542848 kcal Electronic energy + Delta-G solvation = -26400.874089 eV Core-core repulsion = 22544.136329 eV Total energy + Delta-G solvation = -3856.737760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -38.55875 -37.27173 -36.93512 -35.83429 -34.81133 -33.43083 -32.74920 -30.87198 -30.56123 -29.80145 -29.57083 -26.16753 -23.72678 -23.41116 -21.13870 -20.29007 -19.67310 -18.55659 -17.92127 -17.41811 -16.63327 -16.42804 -16.12734 -15.71605 -14.73201 -14.63738 -14.50561 -14.42818 -14.36818 -14.01201 -13.97997 -13.95499 -13.73536 -13.66624 -13.07911 -12.68739 -12.34672 -12.17319 -12.01832 -11.98233 -11.86866 -11.72595 -11.61210 -11.31906 -11.06146 -10.93238 -10.83415 -10.68387 -10.53921 -10.49520 -10.40548 -9.80869 -9.39554 -9.09803 -8.85084 -8.29562 -7.63991 -5.96296 -3.98689 -1.23354 0.73041 1.98667 2.49931 2.98193 3.25029 3.35137 3.39737 3.41720 3.99959 4.10828 4.19855 4.26438 4.40234 4.57399 4.62601 4.69268 4.85639 4.95894 5.17431 5.33023 5.39180 5.46104 5.58344 5.62390 5.74323 5.92870 6.08904 6.21274 6.27714 6.37113 6.42811 6.54043 6.78787 7.00755 7.55319 7.61944 7.83757 7.94132 8.12673 8.46936 9.08412 9.64609 11.15009 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.002647 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.393965 B =10577.285834 C =10908.212104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 2.318 3.682 3 C -0.533 4.533 4 O -0.919 6.919 5 N -1.519 6.519 6 S 2.784 3.216 7 O -1.006 7.006 8 O -0.975 6.975 9 N -0.976 5.976 10 C 0.129 3.871 11 C 0.042 3.958 12 N -0.537 5.537 13 C 0.064 3.936 14 C 0.027 3.973 15 C -0.523 4.523 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.041 3.959 24 C 0.132 3.868 25 H 0.144 0.856 26 H 0.133 0.867 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.019 0.981 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.536 11.901 -18.600 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.509 3.491 3 C -0.694 4.694 4 O -0.904 6.904 5 N -1.538 6.538 6 S 2.792 3.208 7 O -0.989 6.989 8 O -0.957 6.957 9 N -0.818 5.818 10 C 0.004 3.996 11 C -0.088 4.088 12 N -0.262 5.262 13 C -0.062 4.062 14 C -0.010 4.010 15 C -0.561 4.561 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.089 4.089 24 C 0.006 3.994 25 H 0.162 0.838 26 H 0.152 0.848 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.258 10.361 -19.219 28.462 hybrid contribution 0.354 1.743 0.880 1.985 sum -17.904 12.104 -18.339 28.344 Atomic orbital electron populations 1.30486 1.22400 1.14495 1.12057 1.10728 0.80282 0.83139 0.74931 1.29064 1.14292 1.13905 1.12105 1.93713 1.73622 1.63767 1.59325 1.76679 1.73676 1.48778 1.54674 1.01528 0.73068 0.72752 0.73480 1.93580 1.31577 1.86925 1.86846 1.93666 1.72584 1.69111 1.60385 1.57327 1.23490 1.79388 1.21634 1.21695 0.79579 0.98649 0.99670 1.22564 0.98147 0.98482 0.89567 1.61965 1.02802 1.54651 1.06735 1.22326 0.96882 0.95503 0.91515 1.19103 0.90072 0.95642 0.96165 1.21156 1.07772 1.07657 1.19556 0.92913 1.24988 0.97447 0.94977 0.96885 1.69957 1.22405 1.18315 1.42484 0.86663 0.79320 0.79510 0.82494 1.20283 1.21311 1.20358 1.22425 0.92046 0.95662 0.98744 1.21512 0.92688 1.01082 0.84122 0.83799 0.84826 0.83215 0.83094 0.84567 0.83560 0.90184 0.89383 0.94652 0.88471 0.96276 0.92069 0.95656 0.96424 0.92942 0.94709 0.90140 0.89712 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.57 10.26 101.05 1.04 -1.53 16 2 S 2.32 16.62 4.91 -98.05 -0.48 16.14 16 3 C -0.53 -0.73 10.89 101.05 1.10 0.37 16 4 O -0.92 -11.47 17.12 -46.31 -0.79 -12.26 16 5 N -1.52 -17.65 10.88 60.35 0.66 -16.99 16 6 S 2.78 42.64 5.77 -98.05 -0.57 42.07 16 7 O -1.01 -15.01 14.64 -57.17 -0.84 -15.85 16 8 O -0.98 -18.29 16.03 -62.87 -1.01 -19.30 16 9 N -0.98 -15.05 3.38 -112.97 -0.38 -15.43 16 10 C 0.13 2.09 6.56 -3.36 -0.02 2.07 16 11 C 0.04 0.74 5.48 -3.47 -0.02 0.73 16 12 N -0.54 -9.93 4.63 -234.02 -1.08 -11.01 16 13 C 0.06 1.36 4.90 -3.82 -0.02 1.34 16 14 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 15 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 24 C 0.13 1.83 6.53 -3.60 -0.02 1.81 16 25 H 0.14 0.23 8.14 -51.92 -0.42 -0.20 16 26 H 0.13 0.03 8.14 -51.93 -0.42 -0.39 16 27 H 0.15 1.02 6.46 -51.92 -0.34 0.69 16 28 H 0.15 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.14 -0.28 8.14 -51.93 -0.42 -0.70 16 30 H 0.15 -0.12 8.14 -51.92 -0.42 -0.54 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.37 7.21 -51.93 -0.37 1.00 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.87 6.16 -51.93 -0.32 1.55 16 35 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.06 1.26 7.97 -51.93 -0.41 0.85 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.48 6.40 -51.93 -0.33 0.15 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.10 7.99 -51.93 -0.41 0.69 16 42 H 0.08 1.00 7.22 -51.93 -0.37 0.63 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -40.89 366.22 -8.53 -49.42 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -6.76 Total: -5.20 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 1.49 Total: -7.58 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -0.07 Total: -69.65 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -2.64 Total: -47.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 59.26 SS G_CDS: -1.05 Total: 58.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -40.89 -8.53 -49.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846964444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.122 kcal (2) G-P(sol) polarization free energy of solvation -40.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds