Wall clock time and date at job start Tue Mar 31 2020 22:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 107.16744 * 2 1 4 4 O 1.42094 * 113.54289 * 233.79870 * 2 1 3 5 5 N 1.49359 * 107.51993 * 115.33702 * 2 1 3 6 6 S 1.65608 * 119.99742 * 64.89599 * 5 2 1 7 7 O 1.42099 * 106.40241 * 293.53600 * 6 5 2 8 8 O 1.42097 * 106.39895 * 66.45675 * 6 5 2 9 9 N 1.65596 * 107.21450 * 179.97438 * 6 5 2 10 10 C 1.47085 * 120.87974 * 269.72071 * 9 6 5 11 11 C 1.53697 * 108.27513 * 128.76183 * 10 9 6 12 12 N 1.46894 * 109.26100 * 54.08023 * 11 10 9 13 13 C 1.46899 * 110.99915 * 172.61157 * 12 11 10 14 14 C 1.52999 * 109.47013 * 294.29934 * 13 12 11 15 15 C 1.50705 * 109.47349 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99837 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00231 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99956 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99830 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46925 * 60.00179 * 19 17 15 21 21 H 1.48505 * 109.46662 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47244 * 299.99783 * 19 17 15 23 23 C 1.46904 * 111.26757 * 296.75658 * 12 11 10 24 24 C 1.47080 * 120.88292 * 90.00439 * 9 6 5 25 25 H 1.09007 * 109.46956 * 306.19541 * 1 2 3 26 26 H 1.08997 * 109.47175 * 66.19415 * 1 2 3 27 27 H 1.09001 * 109.47187 * 186.20027 * 1 2 3 28 28 H 1.09005 * 109.47075 * 175.33592 * 3 2 1 29 29 H 1.08996 * 109.47126 * 295.33789 * 3 2 1 30 30 H 1.09006 * 109.47086 * 55.34208 * 3 2 1 31 31 H 1.09003 * 109.63026 * 248.52257 * 10 9 6 32 32 H 1.08994 * 109.62789 * 9.10266 * 10 9 6 33 33 H 1.09004 * 109.64256 * 294.07501 * 11 10 9 34 34 H 1.09003 * 109.42096 * 173.95263 * 11 10 9 35 35 H 1.08999 * 109.47578 * 54.30078 * 13 12 11 36 36 H 1.09005 * 109.46866 * 174.29983 * 13 12 11 37 37 H 1.08999 * 109.47357 * 299.99994 * 14 13 12 38 38 H 1.08997 * 109.47013 * 60.00254 * 14 13 12 39 39 H 0.96996 * 119.99940 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.49178 * 303.14577 * 23 12 11 41 41 H 1.09001 * 109.49247 * 183.06134 * 23 12 11 42 42 H 1.08994 * 109.62731 * 350.88738 * 24 9 6 43 43 H 1.09000 * 109.63280 * 111.47578 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7332 0.0000 4 8 2.3816 -0.7694 -1.0512 5 7 2.2637 -0.6095 1.2873 6 16 1.9326 -2.1996 1.6107 7 8 0.5212 -2.2967 1.7435 8 8 2.6795 -2.9635 0.6737 9 7 2.5676 -2.5390 3.1019 10 6 3.9449 -3.0363 3.2406 11 6 4.6709 -2.1625 4.2758 12 7 3.8918 -2.1378 5.5208 13 6 4.6331 -1.4594 6.5923 14 6 5.8766 -2.2765 6.9485 15 6 6.6368 -1.5809 8.0482 16 1 6.2700 -0.6489 8.4524 17 6 7.8013 -2.1337 8.5377 18 7 8.2483 -3.2682 8.0452 19 14 8.7439 -1.2710 9.9003 20 1 7.8759 -1.1435 11.0985 21 1 9.9508 -2.0643 10.2461 22 1 9.1539 0.0799 9.4400 23 6 2.5772 -1.5153 5.3145 24 6 1.7673 -2.3569 4.3224 25 1 -0.3633 0.6069 0.8294 26 1 -0.3633 0.4148 -0.9402 27 1 -0.3633 -1.0217 0.1110 28 1 3.4354 1.7780 0.0836 29 1 2.0365 2.2101 -0.9288 30 1 1.8983 2.2528 0.8454 31 1 3.9278 -4.0723 3.5791 32 1 4.4564 -2.9703 2.2804 33 1 4.7741 -1.1478 3.8910 34 1 5.6587 -2.5792 4.4729 35 1 4.9344 -0.4679 6.2544 36 1 3.9959 -1.3654 7.4718 37 1 5.5754 -3.2680 7.2866 38 1 6.5137 -2.3704 6.0692 39 1 9.0673 -3.6572 8.3898 40 1 2.7096 -0.5098 4.9153 41 1 2.0464 -1.4629 6.2651 42 1 0.8387 -1.8415 4.0778 43 1 1.5450 -3.3289 4.7629 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846964444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:45 Heat of formation + Delta-G solvation = -86.261507 kcal Electronic energy + Delta-G solvation = -26402.422966 eV Core-core repulsion = 22544.136329 eV Total energy + Delta-G solvation = -3858.286637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92868 -38.39360 -37.69392 -37.03049 -36.36909 -34.78487 -34.17621 -32.18166 -31.44830 -30.78732 -30.05298 -27.81550 -25.50880 -24.78622 -22.46139 -21.78969 -20.80133 -19.60443 -18.95257 -18.45947 -18.30509 -17.45237 -16.85911 -16.64091 -16.51840 -16.11991 -15.87167 -15.58274 -15.49010 -15.32509 -14.92240 -14.38971 -14.31002 -14.09836 -14.05029 -13.90781 -13.66520 -13.52495 -13.49242 -13.19579 -13.12527 -12.93422 -12.76738 -12.63000 -12.55495 -12.38987 -12.34057 -12.22827 -11.79460 -11.75899 -11.47618 -11.25474 -11.20734 -11.15908 -10.49656 -10.12516 -9.11387 -8.16292 -6.27517 -1.63905 -0.29972 1.42156 1.45572 1.53343 1.54066 1.70825 1.94667 2.42981 2.76707 3.07044 3.17070 3.48442 3.52217 3.65393 3.94746 4.03473 4.06952 4.10060 4.19308 4.23510 4.29999 4.33225 4.45793 4.60404 4.70810 4.75704 4.83852 4.87100 4.92651 4.94359 5.04584 5.10806 5.15884 5.50091 5.55888 5.71602 5.82850 6.13203 6.33493 6.36787 6.90044 7.41326 8.95613 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022210 B = 0.002647 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.393965 B =10577.285834 C =10908.212104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.617 4.617 2 S 2.273 3.727 3 C -0.492 4.492 4 O -0.989 6.989 5 N -1.534 6.534 6 S 2.786 3.214 7 O -1.012 7.012 8 O -1.024 7.024 9 N -0.984 5.984 10 C 0.135 3.865 11 C 0.048 3.952 12 N -0.549 5.549 13 C 0.082 3.918 14 C 0.035 3.965 15 C -0.543 4.543 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.043 3.957 24 C 0.130 3.870 25 H 0.178 0.822 26 H 0.179 0.821 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.184 0.816 30 H 0.182 0.818 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.021 0.979 36 H 0.070 0.930 37 H -0.008 1.008 38 H -0.006 1.006 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.488 15.879 -18.374 31.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.471 3.529 3 C -0.655 4.655 4 O -0.975 6.975 5 N -1.555 6.555 6 S 2.795 3.205 7 O -0.994 6.994 8 O -1.007 7.007 9 N -0.825 5.825 10 C 0.009 3.991 11 C -0.081 4.081 12 N -0.274 5.274 13 C -0.045 4.045 14 C -0.003 4.003 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.086 4.086 24 C 0.004 3.996 25 H 0.196 0.804 26 H 0.197 0.803 27 H 0.139 0.861 28 H 0.167 0.833 29 H 0.201 0.799 30 H 0.199 0.801 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.010 0.990 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.223 14.307 -18.995 31.216 hybrid contribution 0.841 0.654 0.692 1.270 sum -19.382 14.961 -18.303 30.569 Atomic orbital electron populations 1.30277 1.17273 1.13888 1.16087 1.12043 0.82065 0.86429 0.72318 1.28985 1.14252 1.06036 1.16197 1.93658 1.75735 1.68020 1.60055 1.76391 1.76603 1.46889 1.55624 1.01188 0.72750 0.73719 0.72873 1.93559 1.31513 1.87596 1.86755 1.93600 1.73576 1.71645 1.61862 1.57307 1.22830 1.80133 1.22239 1.21527 0.80381 0.98191 0.99022 1.22444 0.97206 0.98713 0.89780 1.61869 1.04028 1.55155 1.06337 1.21965 0.95189 0.94527 0.92841 1.18941 0.91890 0.94687 0.94760 1.21611 1.08324 1.08118 1.20118 0.92000 1.25974 0.98589 0.95651 0.99586 1.70110 1.22973 1.20030 1.44135 0.85485 0.77718 0.78509 0.79206 1.19073 1.21080 1.19110 1.22532 0.90052 0.95952 1.00113 1.21658 0.93200 1.01355 0.83344 0.80426 0.80337 0.86103 0.83329 0.79856 0.80061 0.90523 0.89514 0.94325 0.91001 0.96081 0.91177 0.98965 0.98756 0.92852 0.93822 0.88294 0.87194 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -2.89 10.26 113.37 1.16 -1.72 16 2 S 2.27 28.97 4.91 -37.16 -0.18 28.79 16 3 C -0.49 1.08 10.89 113.37 1.23 2.31 16 4 O -0.99 -25.69 17.12 -138.39 -2.37 -28.06 16 5 N -1.53 -34.83 10.88 37.02 0.40 -34.43 16 6 S 2.79 87.50 5.77 -37.16 -0.21 87.29 16 7 O -1.01 -30.14 14.64 -128.00 -1.87 -32.02 16 8 O -1.02 -41.08 16.03 -122.56 -1.96 -43.05 16 9 N -0.98 -30.77 3.38 -511.32 -1.73 -32.50 16 10 C 0.13 4.59 6.56 86.50 0.57 5.16 16 11 C 0.05 1.78 5.48 86.54 0.47 2.26 16 12 N -0.55 -20.45 4.63 -894.30 -4.14 -24.59 16 13 C 0.08 3.48 4.90 86.30 0.42 3.90 16 14 C 0.03 1.87 4.90 29.85 0.15 2.02 16 15 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 18 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 19 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 C 0.04 1.22 5.62 86.38 0.49 1.70 16 24 C 0.13 3.48 6.53 86.35 0.56 4.04 16 25 H 0.18 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.18 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.12 1.48 6.46 -2.39 -0.02 1.47 16 28 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.18 -1.97 8.14 -2.39 -0.02 -1.99 16 30 H 0.18 -1.50 8.14 -2.39 -0.02 -1.52 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.09 2.94 7.21 -2.39 -0.02 2.92 16 33 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.07 2.98 6.16 -2.39 -0.01 2.97 16 35 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 36 H 0.07 2.83 7.97 -2.38 -0.02 2.81 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.34 6.40 -2.39 -0.02 -0.35 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 2.47 7.99 -2.39 -0.02 2.45 16 42 H 0.11 2.39 7.22 -2.39 -0.02 2.37 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -96.10 366.22 -3.01 -99.11 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.00 Total: 1.19 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 5.75 Total: -10.77 kcal Atomic # 7 Polarization: -143.79 SS G_CDS: -5.18 Total: -148.97 kcal Atomic # 8 Polarization: -96.92 SS G_CDS: -6.21 Total: -103.13 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 116.47 SS G_CDS: -0.40 Total: 116.08 kcal Total: -96.10 -3.01 -99.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846964444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.851 kcal (2) G-P(sol) polarization free energy of solvation -96.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds