Wall clock time and date at job start Tue Mar 31 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86807 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47243 * 300.00441 * 3 2 1 6 6 H 1.48504 * 109.46816 * 60.00096 * 3 2 1 7 7 C 1.37875 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99261 * 175.14631 * 7 2 1 9 9 C 1.50697 * 120.00164 * 355.42206 * 7 2 1 10 10 C 1.53000 * 115.54821 * 274.66358 * 9 7 2 11 11 N 1.46500 * 109.47332 * 304.51533 * 10 9 7 12 12 C 1.34775 * 120.00205 * 184.80942 * 11 10 9 13 13 O 1.21367 * 120.00126 * 4.93329 * 12 11 10 14 14 C 1.49357 * 120.00339 * 184.93302 * 12 11 10 15 15 O 1.21381 * 119.99596 * 5.08730 * 14 12 11 16 16 N 1.34770 * 120.00255 * 185.09083 * 14 12 11 17 17 C 1.39752 * 120.00020 * 185.23015 * 16 14 12 18 18 C 1.38954 * 120.49402 * 212.97593 * 17 16 14 19 19 N 1.31774 * 120.65078 * 179.73033 * 18 17 16 20 20 C 1.31887 * 121.80650 * 0.57916 * 19 18 17 21 21 C 1.38244 * 120.93154 * 359.67792 * 20 19 18 22 22 C 1.50697 * 120.37630 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.47255 * 120.03055 * 22 21 20 24 24 F 1.39909 * 109.46893 * 240.02533 * 22 21 20 25 25 C 1.38531 * 119.24122 * 0.02854 * 21 20 19 26 26 C 1.52997 * 117.49822 * 128.99843 * 9 7 2 27 27 C 1.52994 * 117.49947 * 60.33388 * 9 7 2 28 28 H 0.97003 * 120.00059 * 4.99708 * 1 2 3 29 29 H 1.09005 * 109.47370 * 64.50999 * 10 9 7 30 30 H 1.08995 * 109.47291 * 184.51214 * 10 9 7 31 31 H 0.97004 * 119.99867 * 4.80045 * 11 10 9 32 32 H 0.97000 * 120.00492 * 5.22434 * 16 14 12 33 33 H 1.07995 * 119.66910 * 359.97438 * 18 17 16 34 34 H 1.07995 * 119.53762 * 179.70878 * 20 19 18 35 35 H 1.08995 * 109.47697 * 0.02562 * 22 21 20 36 36 H 1.07998 * 120.81691 * 180.02562 * 25 21 20 37 37 H 1.08998 * 117.49895 * 359.97438 * 26 9 7 38 38 H 1.08999 * 117.49770 * 145.02260 * 26 9 7 39 39 H 1.09003 * 117.50051 * 214.98249 * 27 9 7 40 40 H 1.08995 * 117.50154 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1956 -0.0797 9 6 1.2547 -2.4971 0.1030 10 6 0.9244 -2.9572 1.5244 11 7 2.1571 -3.0308 2.3127 12 6 2.1237 -3.5081 3.5726 13 8 1.0913 -3.9599 4.0233 14 6 3.3572 -3.4812 4.4144 15 8 4.3643 -2.9466 3.9982 16 7 3.3520 -4.0506 5.6359 17 6 4.4690 -3.9311 6.4673 18 6 4.8121 -4.9572 7.3391 19 7 5.8677 -4.8500 8.1206 20 6 6.6284 -3.7727 8.1174 21 6 6.3485 -2.7077 7.2815 22 6 7.2265 -1.4829 7.2877 23 9 7.7725 -1.2941 6.0135 24 9 6.4635 -0.3639 7.6386 25 6 5.2517 -2.7793 6.4383 26 6 1.5687 -3.5772 -0.9340 27 6 0.2409 -2.8181 -0.9969 28 1 -0.4850 0.8369 -0.0732 29 1 0.2396 -2.2461 1.9866 30 1 0.4568 -3.9411 1.4884 31 1 2.9973 -2.7361 1.9277 32 1 2.5731 -4.5433 5.9381 33 1 4.2099 -5.8531 7.3737 34 1 7.4823 -3.7219 8.7766 35 1 8.0306 -1.6158 8.0114 36 1 5.0098 -1.9623 5.7747 37 1 2.3174 -3.3452 -1.6915 38 1 1.5395 -4.6156 -0.6039 39 1 -0.6613 -3.3574 -0.7081 40 1 0.1160 -2.0867 -1.7953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873862338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:26 Heat of formation + Delta-G solvation = -104.118468 kcal Electronic energy + Delta-G solvation = -28571.049665 eV Core-core repulsion = 24022.704353 eV Total energy + Delta-G solvation = -4548.345311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.24416 -47.23229 -41.36392 -40.04877 -38.43878 -36.82825 -35.67252 -33.51796 -33.39899 -32.03986 -30.82491 -27.28149 -26.93896 -25.63054 -24.81898 -23.33146 -22.23318 -21.21424 -20.26221 -19.69218 -18.68635 -18.14352 -17.63838 -17.47013 -17.39417 -16.60663 -16.39966 -16.25365 -15.74531 -15.49709 -14.88198 -14.75818 -14.44484 -14.14246 -14.01585 -13.84638 -13.59191 -13.58755 -13.34816 -13.18891 -12.89750 -12.80214 -12.06331 -11.77337 -11.68946 -11.52804 -11.34398 -11.04080 -11.01778 -10.55316 -10.30621 -10.24109 -10.14112 -9.69909 -9.40382 -9.14702 -8.79615 -8.65968 -8.49893 -8.22415 -6.15224 -4.25752 0.36518 0.71392 1.54646 2.25167 3.15108 3.22473 3.25467 3.32329 3.36174 3.39747 3.66335 3.78430 4.06322 4.17614 4.31110 4.36010 4.51886 4.67983 4.70138 4.82334 4.96266 5.12411 5.25891 5.49874 5.63607 5.66503 5.87689 6.19074 6.21451 6.32726 6.37810 6.57562 6.67734 6.70625 6.92106 7.02154 7.22035 7.38332 7.42342 7.52478 7.75050 7.91346 8.23128 8.33727 8.77305 9.43148 10.91566 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.003086 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.860907 B = 9070.126390 C =10692.855672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.019 3.981 10 C 0.158 3.842 11 N -0.657 5.657 12 C 0.498 3.502 13 O -0.536 6.536 14 C 0.509 3.491 15 O -0.491 6.491 16 N -0.647 5.647 17 C 0.102 3.898 18 C 0.100 3.900 19 N -0.462 5.462 20 C 0.115 3.885 21 C -0.204 4.204 22 C 0.320 3.680 23 F -0.193 7.193 24 F -0.197 7.197 25 C -0.040 4.040 26 C -0.210 4.210 27 C -0.139 4.139 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.417 0.583 32 H 0.428 0.572 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.124 0.876 36 H 0.154 0.846 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.810 -7.831 15.693 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.019 3.981 10 C 0.036 3.964 11 N -0.307 5.307 12 C 0.277 3.723 13 O -0.416 6.416 14 C 0.292 3.708 15 O -0.363 6.363 16 N -0.295 5.295 17 C 0.005 3.995 18 C -0.060 4.060 19 N -0.169 5.169 20 C -0.043 4.043 21 C -0.208 4.208 22 C 0.266 3.734 23 F -0.174 7.174 24 F -0.178 7.178 25 C -0.068 4.068 26 C -0.247 4.247 27 C -0.177 4.177 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.254 0.746 32 H 0.267 0.733 33 H 0.185 0.815 34 H 0.183 0.817 35 H 0.142 0.858 36 H 0.172 0.828 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.763 -8.242 16.202 21.125 hybrid contribution 0.061 1.719 -0.796 1.895 sum 10.824 -6.523 15.405 19.926 Atomic orbital electron populations 1.69995 1.05893 1.26925 1.48142 1.24987 0.94831 0.99059 0.94043 0.86577 0.80421 0.83644 0.77700 1.19481 1.20929 1.20885 1.20402 0.92849 0.88421 1.52424 0.91892 1.19024 0.99857 0.93685 0.85561 1.21223 0.83793 0.99103 0.92283 1.45907 1.14549 1.58801 1.11441 1.19549 0.87645 0.81360 0.83761 1.90745 1.31929 1.46469 1.72410 1.20879 0.89557 0.78573 0.81835 1.90817 1.33208 1.40950 1.71337 1.43134 1.17215 1.54383 1.14805 1.18755 0.90980 0.94975 0.94773 1.22827 0.93988 0.96711 0.92439 1.67770 1.04282 1.24068 1.20800 1.22546 0.98093 0.87908 0.95792 1.21351 0.99418 0.98516 1.01478 1.20244 0.89841 0.80810 0.82542 1.93068 1.86168 1.95560 1.42620 1.93045 1.78060 1.54819 1.91888 1.21529 0.92736 0.96776 0.95757 1.23073 1.00797 0.95484 1.05380 1.22467 0.90747 1.01255 1.03218 0.92836 0.90711 0.93152 0.74609 0.73336 0.81505 0.81727 0.85837 0.82790 0.90196 0.91619 0.91705 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.51 12.64 55.43 0.70 -22.81 16 2 C 0.08 1.96 5.43 -17.82 -0.10 1.86 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.50 -12.68 8.12 -34.44 -0.28 -12.96 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.02 0.44 1.62 -155.67 -0.25 0.19 16 10 C 0.16 3.35 5.58 -4.04 -0.02 3.32 16 11 N -0.66 -12.53 5.40 -60.76 -0.33 -12.86 16 12 C 0.50 8.68 7.88 -11.63 -0.09 8.58 16 13 O -0.54 -10.00 16.48 5.48 0.09 -9.91 16 14 C 0.51 7.72 7.64 -11.63 -0.09 7.63 16 15 O -0.49 -8.46 14.22 5.47 0.08 -8.38 16 16 N -0.65 -7.54 5.33 -10.20 -0.05 -7.60 16 17 C 0.10 1.15 6.30 -83.59 -0.53 0.62 16 18 C 0.10 0.93 11.12 -17.31 -0.19 0.74 16 19 N -0.46 -4.47 10.35 -13.07 -0.14 -4.60 16 20 C 0.11 0.94 10.82 -17.53 -0.19 0.75 16 21 C -0.20 -2.01 5.38 -104.51 -0.56 -2.57 16 22 C 0.32 2.81 5.47 36.00 0.20 3.01 16 23 F -0.19 -2.28 17.27 2.25 0.04 -2.25 16 24 F -0.20 -2.18 17.27 2.25 0.04 -2.14 16 25 C -0.04 -0.49 8.36 -39.08 -0.33 -0.82 16 26 C -0.21 -4.25 9.93 -26.69 -0.27 -4.51 16 27 C -0.14 -3.05 9.16 -26.69 -0.24 -3.29 16 28 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 29 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.42 7.98 7.48 -40.82 -0.31 7.67 16 32 H 0.43 4.04 8.32 -40.82 -0.34 3.71 16 33 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.17 0.72 7.95 -52.49 -0.42 0.31 16 35 H 0.12 0.50 7.89 -51.93 -0.41 0.09 16 36 H 0.15 2.22 6.51 -52.49 -0.34 1.88 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -30.37 363.74 -6.37 -36.74 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.31 Total: 10.29 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.94 Total: 2.55 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.18 Total: -47.87 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.17 Total: -18.29 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.08 Total: -4.38 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.37 -6.37 -36.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873862338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.377 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds