Wall clock time and date at job start Tue Mar 31 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86807 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47243 * 300.00441 * 3 2 1 6 6 H 1.48504 * 109.46816 * 60.00096 * 3 2 1 7 7 C 1.37875 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99261 * 175.14631 * 7 2 1 9 9 C 1.50697 * 120.00164 * 355.42206 * 7 2 1 10 10 C 1.53000 * 115.54821 * 274.66358 * 9 7 2 11 11 N 1.46500 * 109.47332 * 304.51533 * 10 9 7 12 12 C 1.34775 * 120.00205 * 184.80942 * 11 10 9 13 13 O 1.21367 * 120.00126 * 4.93329 * 12 11 10 14 14 C 1.49357 * 120.00339 * 184.93302 * 12 11 10 15 15 O 1.21381 * 119.99596 * 5.08730 * 14 12 11 16 16 N 1.34770 * 120.00255 * 185.09083 * 14 12 11 17 17 C 1.39752 * 120.00020 * 185.23015 * 16 14 12 18 18 C 1.38954 * 120.49402 * 212.97593 * 17 16 14 19 19 N 1.31774 * 120.65078 * 179.73033 * 18 17 16 20 20 C 1.31887 * 121.80650 * 0.57916 * 19 18 17 21 21 C 1.38244 * 120.93154 * 359.67792 * 20 19 18 22 22 C 1.50697 * 120.37630 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.47255 * 120.03055 * 22 21 20 24 24 F 1.39909 * 109.46893 * 240.02533 * 22 21 20 25 25 C 1.38531 * 119.24122 * 0.02854 * 21 20 19 26 26 C 1.52997 * 117.49822 * 128.99843 * 9 7 2 27 27 C 1.52994 * 117.49947 * 60.33388 * 9 7 2 28 28 H 0.97003 * 120.00059 * 4.99708 * 1 2 3 29 29 H 1.09005 * 109.47370 * 64.50999 * 10 9 7 30 30 H 1.08995 * 109.47291 * 184.51214 * 10 9 7 31 31 H 0.97004 * 119.99867 * 4.80045 * 11 10 9 32 32 H 0.97000 * 120.00492 * 5.22434 * 16 14 12 33 33 H 1.07995 * 119.66910 * 359.97438 * 18 17 16 34 34 H 1.07995 * 119.53762 * 179.70878 * 20 19 18 35 35 H 1.08995 * 109.47697 * 0.02562 * 22 21 20 36 36 H 1.07998 * 120.81691 * 180.02562 * 25 21 20 37 37 H 1.08998 * 117.49895 * 359.97438 * 26 9 7 38 38 H 1.08999 * 117.49770 * 145.02260 * 26 9 7 39 39 H 1.09003 * 117.50051 * 214.98249 * 27 9 7 40 40 H 1.08995 * 117.50154 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1956 -0.0797 9 6 1.2547 -2.4971 0.1030 10 6 0.9244 -2.9572 1.5244 11 7 2.1571 -3.0308 2.3127 12 6 2.1237 -3.5081 3.5726 13 8 1.0913 -3.9599 4.0233 14 6 3.3572 -3.4812 4.4144 15 8 4.3643 -2.9466 3.9982 16 7 3.3520 -4.0506 5.6359 17 6 4.4690 -3.9311 6.4673 18 6 4.8121 -4.9572 7.3391 19 7 5.8677 -4.8500 8.1206 20 6 6.6284 -3.7727 8.1174 21 6 6.3485 -2.7077 7.2815 22 6 7.2265 -1.4829 7.2877 23 9 7.7725 -1.2941 6.0135 24 9 6.4635 -0.3639 7.6386 25 6 5.2517 -2.7793 6.4383 26 6 1.5687 -3.5772 -0.9340 27 6 0.2409 -2.8181 -0.9969 28 1 -0.4850 0.8369 -0.0732 29 1 0.2396 -2.2461 1.9866 30 1 0.4568 -3.9411 1.4884 31 1 2.9973 -2.7361 1.9277 32 1 2.5731 -4.5433 5.9381 33 1 4.2099 -5.8531 7.3737 34 1 7.4823 -3.7219 8.7766 35 1 8.0306 -1.6158 8.0114 36 1 5.0098 -1.9623 5.7747 37 1 2.3174 -3.3452 -1.6915 38 1 1.5395 -4.6156 -0.6039 39 1 -0.6613 -3.3574 -0.7081 40 1 0.1160 -2.0867 -1.7953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873862338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:26 Heat of formation + Delta-G solvation = -124.757993 kcal Electronic energy + Delta-G solvation = -28571.944662 eV Core-core repulsion = 24022.704353 eV Total energy + Delta-G solvation = -4549.240308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.01291 -48.02877 -42.39514 -41.12510 -39.76703 -38.51339 -36.74369 -35.04393 -34.14858 -33.99791 -31.71635 -28.82692 -27.65675 -27.48902 -25.99752 -24.29708 -23.16085 -22.88352 -21.56917 -21.33013 -19.95939 -19.08053 -18.55979 -18.24716 -18.21163 -17.99615 -17.69686 -17.32014 -16.99640 -16.70497 -16.55963 -16.21034 -15.77816 -15.36215 -15.13517 -14.91814 -14.78999 -14.50214 -14.40663 -14.39518 -14.05164 -13.76295 -13.60550 -13.54033 -12.99865 -12.92607 -12.89949 -12.38861 -12.37553 -12.27017 -12.01900 -11.45178 -11.13129 -11.02319 -10.99371 -10.62080 -10.48865 -10.21643 -9.95404 -9.65039 -8.14034 -6.27488 -0.43067 -0.16619 0.36460 1.08563 1.36461 1.42390 1.50640 1.95712 2.37688 2.44152 2.51036 2.63747 3.12803 3.17683 3.26656 3.45625 3.51339 3.55335 3.58629 3.76624 3.99293 4.08678 4.17800 4.23191 4.48722 4.62226 4.65889 4.73572 4.79311 4.86288 4.89879 5.01957 5.24737 5.27771 5.39847 5.49217 5.66656 5.74138 5.75144 6.29138 6.33416 6.53680 6.67859 6.79963 6.85308 7.42858 8.92425 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.003086 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.860907 B = 9070.126390 C =10692.855672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.032 3.968 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.288 1.288 7 C -0.507 4.507 8 H 0.057 0.943 9 C -0.004 4.004 10 C 0.173 3.827 11 N -0.664 5.664 12 C 0.502 3.498 13 O -0.548 6.548 14 C 0.516 3.484 15 O -0.517 6.517 16 N -0.627 5.627 17 C 0.080 3.920 18 C 0.115 3.885 19 N -0.474 5.474 20 C 0.132 3.868 21 C -0.212 4.212 22 C 0.312 3.688 23 F -0.215 7.215 24 F -0.214 7.214 25 C -0.064 4.064 26 C -0.182 4.182 27 C -0.145 4.145 28 H 0.260 0.740 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.416 0.584 32 H 0.438 0.562 33 H 0.197 0.803 34 H 0.211 0.789 35 H 0.183 0.817 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.580 -9.430 17.654 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.169 4.169 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.214 1.214 7 C -0.545 4.545 8 H 0.076 0.924 9 C -0.005 4.005 10 C 0.050 3.950 11 N -0.314 5.314 12 C 0.282 3.718 13 O -0.427 6.427 14 C 0.298 3.702 15 O -0.391 6.391 16 N -0.276 5.276 17 C -0.016 4.016 18 C -0.044 4.044 19 N -0.181 5.181 20 C -0.025 4.025 21 C -0.215 4.215 22 C 0.259 3.741 23 F -0.196 7.196 24 F -0.195 7.195 25 C -0.092 4.092 26 C -0.219 4.219 27 C -0.183 4.183 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.253 0.747 32 H 0.279 0.721 33 H 0.214 0.786 34 H 0.227 0.773 35 H 0.200 0.800 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.540 -9.864 18.200 24.203 hybrid contribution -0.439 2.160 -1.305 2.562 sum 12.101 -7.704 16.895 22.163 Atomic orbital electron populations 1.70082 1.06846 1.27266 1.49588 1.25575 0.95454 1.01568 0.94307 0.85779 0.79439 0.80748 0.77348 1.19258 1.20568 1.21411 1.20651 0.92794 0.89747 1.51309 0.92447 1.19076 1.00729 0.93974 0.86722 1.20865 0.84083 0.98652 0.91386 1.45817 1.13754 1.59641 1.12164 1.19870 0.88347 0.80285 0.83306 1.90730 1.32709 1.46744 1.72524 1.20331 0.88217 0.79049 0.82622 1.90817 1.33643 1.42520 1.72127 1.42900 1.17986 1.53158 1.13536 1.18875 0.91156 0.95728 0.95878 1.23255 0.93753 0.96701 0.90691 1.67927 1.04584 1.24612 1.20953 1.23241 0.98283 0.86301 0.94701 1.21561 0.98841 0.99718 1.01403 1.20937 0.90910 0.79620 0.82682 1.93020 1.86409 1.95622 1.44564 1.93007 1.78807 1.55796 1.91915 1.21509 0.94472 0.96659 0.96517 1.23065 0.99190 0.96084 1.03587 1.22384 0.92060 1.01497 1.02366 0.93059 0.93930 0.91912 0.74720 0.72062 0.78592 0.77271 0.80033 0.85847 0.90105 0.88977 0.90482 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.55 12.64 21.45 0.27 -49.28 16 2 C 0.03 1.71 5.43 84.65 0.46 2.17 16 3 Si 0.94 42.81 29.54 68.60 2.03 44.84 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.51 -25.87 8.12 25.60 0.21 -25.66 16 8 H 0.06 2.93 7.82 -2.91 -0.02 2.90 16 9 C 0.00 -0.20 1.62 -52.93 -0.09 -0.28 16 10 C 0.17 7.39 5.58 86.38 0.48 7.87 16 11 N -0.66 -25.59 5.40 -464.50 -2.51 -28.10 16 12 C 0.50 17.56 7.88 87.24 0.69 18.25 16 13 O -0.55 -20.28 16.48 -3.30 -0.05 -20.33 16 14 C 0.52 15.75 7.64 87.24 0.67 16.42 16 15 O -0.52 -18.26 14.22 -3.34 -0.05 -18.31 16 16 N -0.63 -14.21 5.33 -304.52 -1.62 -15.83 16 17 C 0.08 1.71 6.30 38.30 0.24 1.95 16 18 C 0.12 1.83 11.12 84.87 0.94 2.78 16 19 N -0.47 -7.55 10.35 -195.28 -2.02 -9.57 16 20 C 0.13 1.69 10.82 84.69 0.92 2.61 16 21 C -0.21 -3.79 5.38 -19.79 -0.11 -3.90 16 22 C 0.31 4.90 5.47 71.23 0.39 5.29 16 23 F -0.21 -4.97 17.27 44.97 0.78 -4.19 16 24 F -0.21 -4.58 17.27 44.97 0.78 -3.81 16 25 C -0.06 -1.56 8.36 22.59 0.19 -1.37 16 26 C -0.18 -7.13 9.93 30.62 0.30 -6.83 16 27 C -0.14 -6.36 9.16 30.62 0.28 -6.08 16 28 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 29 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.06 2.48 8.06 -2.39 -0.02 2.46 16 31 H 0.42 16.20 7.48 -92.71 -0.69 15.51 16 32 H 0.44 7.76 8.32 -92.71 -0.77 6.98 16 33 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.21 0.67 7.95 -2.91 -0.02 0.65 16 35 H 0.18 0.69 7.89 -2.39 -0.02 0.67 16 36 H 0.12 3.77 6.51 -2.91 -0.02 3.75 16 37 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -67.53 363.74 2.83 -64.70 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.34 Total: 26.67 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 5.58 Total: 13.21 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.88 Total: -102.78 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.10 Total: -38.64 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 1.55 Total: -8.00 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.53 2.83 -64.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873862338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.063 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds