Wall clock time and date at job start Tue Mar 31 2020 22:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99998 * 2 1 4 4 N 1.46506 * 109.47086 * 125.00307 * 3 2 1 5 5 C 1.46501 * 119.99577 * 274.83117 * 4 3 2 6 6 C 1.50701 * 109.47231 * 263.73359 * 5 4 3 7 7 H 1.07992 * 120.00294 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99911 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99744 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99900 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.46718 * 90.00147 * 10 8 6 12 12 H 1.48501 * 109.46903 * 209.99799 * 10 8 6 13 13 H 1.48497 * 109.47087 * 329.99960 * 10 8 6 14 14 C 1.34769 * 120.00005 * 94.83717 * 4 3 2 15 15 O 1.21354 * 120.00064 * 354.60952 * 14 4 3 16 16 C 1.49364 * 119.99778 * 174.62008 * 14 4 3 17 17 O 1.21367 * 119.99957 * 0.25918 * 16 14 4 18 18 N 1.34776 * 119.99427 * 180.25830 * 16 14 4 19 19 C 1.39758 * 119.99362 * 184.91063 * 18 16 14 20 20 C 1.38938 * 120.49384 * 145.20193 * 19 18 16 21 21 N 1.31783 * 120.65878 * 180.02562 * 20 19 18 22 22 C 1.31900 * 121.79680 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.93186 * 359.97438 * 22 21 20 24 24 C 1.50695 * 120.37541 * 179.97438 * 23 22 21 25 25 F 1.39894 * 109.47317 * 120.02339 * 24 23 22 26 26 F 1.39905 * 109.46990 * 240.02333 * 24 23 22 27 27 C 1.38534 * 119.24541 * 0.02562 * 23 22 21 28 28 H 1.08005 * 119.99356 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99878 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00251 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47019 * 5.00478 * 3 2 1 32 32 H 1.08995 * 109.47712 * 245.00024 * 3 2 1 33 33 H 1.09000 * 109.47665 * 23.73733 * 5 4 3 34 34 H 1.09006 * 109.46738 * 143.73686 * 5 4 3 35 35 H 0.97004 * 119.99797 * 179.97438 * 9 8 6 36 36 H 0.97000 * 120.00317 * 4.90826 * 18 16 14 37 37 H 1.08004 * 119.67832 * 359.97438 * 20 19 18 38 38 H 1.08001 * 119.53197 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47478 * 0.02562 * 24 23 22 40 40 H 1.08000 * 120.82157 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5294 1.7655 2.4514 6 6 2.8582 3.2233 2.6457 7 1 3.3623 3.7720 1.8640 8 6 2.5155 3.8566 3.8216 9 7 2.8029 5.1287 3.9913 10 14 1.6441 2.9074 5.1741 11 1 2.6515 2.3038 6.0830 12 1 0.7727 3.8307 5.9443 13 1 0.8157 1.8331 4.5701 14 6 4.2768 0.9576 0.9578 15 8 4.6382 0.5061 -0.1091 16 6 5.2539 1.0983 2.0788 17 8 4.8914 1.5452 3.1473 18 7 6.5381 0.7289 1.9034 19 6 7.4283 0.7636 2.9803 20 6 8.4335 -0.1887 3.0950 21 7 9.2744 -0.1593 4.1093 22 6 9.1993 0.7645 5.0478 23 6 8.2271 1.7463 5.0023 24 6 8.1525 2.7953 6.0816 25 9 8.3141 4.0628 5.5119 26 9 6.9073 2.7243 6.7156 27 6 7.3216 1.7541 3.9539 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0897 32 1 2.6213 1.4027 -0.9313 33 1 1.4509 1.6238 2.5219 34 1 3.0245 1.1755 3.2227 35 1 2.5614 5.5744 4.8184 36 1 6.8445 0.4389 1.0300 37 1 8.5263 -0.9612 2.3460 38 1 9.9074 0.7537 5.8632 39 1 8.9426 2.6219 6.8121 40 1 6.5521 2.5094 3.8929 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873890183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:07 Heat of formation + Delta-G solvation = -83.312418 kcal Electronic energy + Delta-G solvation = -29795.984915 eV Core-core repulsion = 25248.541822 eV Total energy + Delta-G solvation = -4547.443093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.87050 -46.86239 -41.04277 -39.90742 -38.19041 -36.19747 -34.96626 -33.36335 -33.05933 -32.17700 -30.46635 -28.23836 -26.73488 -26.59801 -24.57124 -23.20648 -22.49781 -21.65331 -20.16440 -19.40238 -18.00009 -17.68385 -17.12883 -17.11326 -17.08249 -16.92155 -16.37526 -15.89967 -15.58307 -15.53646 -14.99854 -14.64758 -14.19852 -13.99243 -13.77291 -13.62867 -13.37002 -13.21622 -13.11576 -13.00763 -12.80396 -12.54351 -12.39018 -12.10464 -11.68979 -11.39640 -11.29627 -11.05214 -10.92406 -10.74141 -10.53051 -10.23838 -9.90534 -9.81725 -9.59874 -9.34722 -8.82386 -8.56806 -8.42800 -8.05491 -6.10013 -4.08244 0.68912 1.07940 1.89211 2.24781 2.71707 3.29927 3.34403 3.39076 3.45012 3.59926 3.70830 3.88681 4.09495 4.33571 4.40034 4.46817 4.69302 4.76143 4.88926 5.04787 5.13252 5.14431 5.24214 5.30225 5.32767 5.67386 5.85800 5.95914 6.01347 6.09148 6.10144 6.30835 6.59181 6.71691 6.79825 6.82743 7.02657 7.22289 7.51213 7.67648 7.75486 8.03041 8.35306 8.48001 8.88881 9.50041 11.02912 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.004817 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.607135 B = 5811.929352 C = 7819.065441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.140 3.860 4 N -0.549 5.549 5 C 0.199 3.801 6 C -0.520 4.520 7 H 0.072 0.928 8 C 0.083 3.917 9 N -0.893 5.893 10 Si 0.870 3.130 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.513 3.487 15 O -0.552 6.552 16 C 0.492 3.508 17 O -0.433 6.433 18 N -0.656 5.656 19 C 0.107 3.893 20 C 0.093 3.907 21 N -0.466 5.466 22 C 0.109 3.891 23 C -0.204 4.204 24 C 0.320 3.680 25 F -0.196 7.196 26 F -0.192 7.192 27 C -0.039 4.039 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.265 0.735 36 H 0.421 0.579 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.121 0.879 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.726 -9.922 -0.815 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.278 5.278 5 C 0.079 3.921 6 C -0.558 4.558 7 H 0.091 0.909 8 C -0.120 4.120 9 N -0.531 5.531 10 Si 0.697 3.303 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.295 3.705 15 O -0.433 6.433 16 C 0.274 3.726 17 O -0.300 6.300 18 N -0.305 5.305 19 C 0.009 3.991 20 C -0.067 4.067 21 N -0.174 5.174 22 C -0.049 4.049 23 C -0.208 4.208 24 C 0.266 3.734 25 F -0.177 7.177 26 F -0.173 7.173 27 C -0.067 4.067 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.260 0.740 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.138 0.862 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.116 -10.250 -0.407 13.724 hybrid contribution -1.140 0.309 0.365 1.236 sum 7.977 -9.941 -0.043 12.746 Atomic orbital electron populations 1.23842 0.95738 1.01895 1.00787 1.23308 0.96140 0.98979 0.99651 1.20658 0.92211 0.95487 0.89893 1.47913 1.07276 1.59913 1.12711 1.20329 0.95537 0.97627 0.78568 1.21043 1.39598 0.92119 1.03012 0.90950 1.24705 0.95141 0.94568 0.97587 1.69876 1.46908 1.09916 1.26422 0.86942 0.80097 0.80171 0.83054 1.19624 1.21224 1.19209 1.19608 0.83682 0.79877 0.87345 1.90676 1.78728 1.46487 1.27376 1.20477 0.82655 0.79644 0.89856 1.90951 1.76641 1.36232 1.26166 1.43113 1.08431 1.66955 1.12027 1.18742 0.93326 0.95742 0.91279 1.22763 0.91627 0.95828 0.96473 1.67739 1.24569 1.23187 1.01856 1.22470 0.95717 0.89776 0.96947 1.21392 0.99932 1.00462 0.99008 1.20209 0.84518 0.78850 0.89852 1.93046 1.95602 1.42506 1.86520 1.93086 1.45398 1.96176 1.82601 1.21860 0.96896 0.96328 0.91606 0.88589 0.88191 0.87510 0.89026 0.89175 0.94970 0.92732 0.92537 0.74049 0.81863 0.82036 0.86223 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 14.32 29.02 0.42 -1.92 16 2 C -0.16 -2.35 9.84 -36.03 -0.35 -2.70 16 3 C 0.14 2.33 5.83 -5.19 -0.03 2.30 16 4 N -0.55 -10.92 2.46 -176.97 -0.43 -11.36 16 5 C 0.20 4.56 3.85 -5.19 -0.02 4.54 16 6 C -0.52 -14.02 8.35 -34.44 -0.29 -14.30 16 7 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 8 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 9 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 10 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.51 9.90 7.67 -11.63 -0.09 9.82 16 15 O -0.55 -10.47 16.04 5.49 0.09 -10.38 16 16 C 0.49 9.30 7.58 -11.63 -0.09 9.21 16 17 O -0.43 -9.62 9.59 5.48 0.05 -9.56 16 18 N -0.66 -9.75 5.33 -10.20 -0.05 -9.80 16 19 C 0.11 1.55 6.32 -83.59 -0.53 1.02 16 20 C 0.09 1.12 11.13 -17.31 -0.19 0.93 16 21 N -0.47 -5.75 10.35 -13.07 -0.14 -5.89 16 22 C 0.11 1.23 10.82 -17.52 -0.19 1.04 16 23 C -0.20 -2.78 5.38 -104.51 -0.56 -3.35 16 24 C 0.32 4.14 5.47 36.00 0.20 4.34 16 25 F -0.20 -3.02 17.27 2.25 0.04 -2.99 16 26 F -0.19 -3.21 17.27 2.25 0.04 -3.17 16 27 C -0.04 -0.65 8.40 -39.08 -0.33 -0.97 16 28 H 0.10 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 30 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.09 1.51 7.76 -51.93 -0.40 1.11 16 32 H 0.09 1.46 7.36 -51.93 -0.38 1.07 16 33 H 0.03 0.73 7.08 -51.93 -0.37 0.36 16 34 H 0.06 1.30 5.26 -51.93 -0.27 1.02 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.42 5.14 8.30 -40.82 -0.34 4.80 16 37 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.16 1.18 7.95 -52.49 -0.42 0.76 16 39 H 0.12 0.91 7.89 -51.93 -0.41 0.50 16 40 H 0.17 3.35 6.30 -52.49 -0.33 3.02 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -33.32 357.21 -5.27 -38.59 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.19 Total: 6.40 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -2.16 Total: 12.19 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.15 Total: -53.17 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.14 Total: -19.94 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.08 Total: -6.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.32 -5.27 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873890183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.724 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds