Wall clock time and date at job start Tue Mar 31 2020 22:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99998 * 2 1 4 4 N 1.46506 * 109.47086 * 125.00307 * 3 2 1 5 5 C 1.46501 * 119.99577 * 274.83117 * 4 3 2 6 6 C 1.50701 * 109.47231 * 263.73359 * 5 4 3 7 7 H 1.07992 * 120.00294 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99911 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99744 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99900 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.46718 * 90.00147 * 10 8 6 12 12 H 1.48501 * 109.46903 * 209.99799 * 10 8 6 13 13 H 1.48497 * 109.47087 * 329.99960 * 10 8 6 14 14 C 1.34769 * 120.00005 * 94.83717 * 4 3 2 15 15 O 1.21354 * 120.00064 * 354.60952 * 14 4 3 16 16 C 1.49364 * 119.99778 * 174.62008 * 14 4 3 17 17 O 1.21367 * 119.99957 * 0.25918 * 16 14 4 18 18 N 1.34776 * 119.99427 * 180.25830 * 16 14 4 19 19 C 1.39758 * 119.99362 * 184.91063 * 18 16 14 20 20 C 1.38938 * 120.49384 * 145.20193 * 19 18 16 21 21 N 1.31783 * 120.65878 * 180.02562 * 20 19 18 22 22 C 1.31900 * 121.79680 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.93186 * 359.97438 * 22 21 20 24 24 C 1.50695 * 120.37541 * 179.97438 * 23 22 21 25 25 F 1.39894 * 109.47317 * 120.02339 * 24 23 22 26 26 F 1.39905 * 109.46990 * 240.02333 * 24 23 22 27 27 C 1.38534 * 119.24541 * 0.02562 * 23 22 21 28 28 H 1.08005 * 119.99356 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99878 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00251 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47019 * 5.00478 * 3 2 1 32 32 H 1.08995 * 109.47712 * 245.00024 * 3 2 1 33 33 H 1.09000 * 109.47665 * 23.73733 * 5 4 3 34 34 H 1.09006 * 109.46738 * 143.73686 * 5 4 3 35 35 H 0.97004 * 119.99797 * 179.97438 * 9 8 6 36 36 H 0.97000 * 120.00317 * 4.90826 * 18 16 14 37 37 H 1.08004 * 119.67832 * 359.97438 * 20 19 18 38 38 H 1.08001 * 119.53197 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47478 * 0.02562 * 24 23 22 40 40 H 1.08000 * 120.82157 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5294 1.7655 2.4514 6 6 2.8582 3.2233 2.6457 7 1 3.3623 3.7720 1.8640 8 6 2.5155 3.8566 3.8216 9 7 2.8029 5.1287 3.9913 10 14 1.6441 2.9074 5.1741 11 1 2.6515 2.3038 6.0830 12 1 0.7727 3.8307 5.9443 13 1 0.8157 1.8331 4.5701 14 6 4.2768 0.9576 0.9578 15 8 4.6382 0.5061 -0.1091 16 6 5.2539 1.0983 2.0788 17 8 4.8914 1.5452 3.1473 18 7 6.5381 0.7289 1.9034 19 6 7.4283 0.7636 2.9803 20 6 8.4335 -0.1887 3.0950 21 7 9.2744 -0.1593 4.1093 22 6 9.1993 0.7645 5.0478 23 6 8.2271 1.7463 5.0023 24 6 8.1525 2.7953 6.0816 25 9 8.3141 4.0628 5.5119 26 9 6.9073 2.7243 6.7156 27 6 7.3216 1.7541 3.9539 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0897 32 1 2.6213 1.4027 -0.9313 33 1 1.4509 1.6238 2.5219 34 1 3.0245 1.1755 3.2227 35 1 2.5614 5.5744 4.8184 36 1 6.8445 0.4389 1.0300 37 1 8.5263 -0.9612 2.3460 38 1 9.9074 0.7537 5.8632 39 1 8.9426 2.6219 6.8121 40 1 6.5521 2.5094 3.8929 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873890183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:06 Heat of formation + Delta-G solvation = -106.735686 kcal Electronic energy + Delta-G solvation = -29797.000624 eV Core-core repulsion = 25248.541822 eV Total energy + Delta-G solvation = -4548.458802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.01102 -48.03909 -42.35621 -41.18343 -39.61675 -37.70987 -36.25769 -35.01918 -34.11159 -33.94417 -31.63196 -30.10747 -28.12712 -27.63300 -25.88212 -24.72076 -23.95878 -22.90623 -21.44519 -20.66063 -19.30242 -19.11630 -18.89728 -18.32411 -18.23699 -18.19483 -17.71522 -17.11446 -17.06521 -16.86590 -16.30222 -16.09958 -15.94354 -15.25438 -15.09252 -14.91878 -14.76051 -14.54389 -14.41606 -14.30829 -14.13657 -14.01799 -13.84061 -13.56756 -13.20602 -12.91303 -12.72511 -12.37869 -12.33932 -12.23445 -12.12787 -11.98034 -11.71171 -10.99973 -10.96325 -10.77649 -10.50758 -10.18362 -9.75524 -9.54245 -8.28931 -6.30015 -0.35146 -0.09270 0.44791 1.03319 1.31698 1.37992 1.41818 1.50743 2.07939 2.33535 2.45541 2.54155 2.65775 3.09226 3.15338 3.23885 3.47437 3.55575 3.65773 3.82507 3.98215 4.00060 4.10989 4.14328 4.27767 4.43145 4.61812 4.73582 4.79129 4.84725 4.93289 4.99561 5.05375 5.28380 5.45234 5.50933 5.66282 5.80418 5.90188 6.04025 6.30872 6.62798 6.66181 6.68957 6.91578 7.31600 8.87719 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.004817 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.607135 B = 5811.929352 C = 7819.065441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.183 4.183 3 C 0.136 3.864 4 N -0.557 5.557 5 C 0.214 3.786 6 C -0.507 4.507 7 H 0.028 0.972 8 C 0.025 3.975 9 N -0.944 5.944 10 Si 0.931 3.069 11 H -0.281 1.281 12 H -0.282 1.282 13 H -0.236 1.236 14 C 0.510 3.490 15 O -0.548 6.548 16 C 0.490 3.510 17 O -0.476 6.476 18 N -0.636 5.636 19 C 0.085 3.915 20 C 0.115 3.885 21 N -0.471 5.471 22 C 0.132 3.868 23 C -0.215 4.215 24 C 0.308 3.692 25 F -0.216 7.216 26 F -0.219 7.219 27 C -0.067 4.067 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.434 0.566 37 H 0.200 0.800 38 H 0.212 0.788 39 H 0.187 0.813 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 -13.024 -0.357 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.202 4.202 3 C 0.015 3.985 4 N -0.286 5.286 5 C 0.093 3.907 6 C -0.545 4.545 7 H 0.046 0.954 8 C -0.173 4.173 9 N -0.585 5.585 10 Si 0.755 3.245 11 H -0.207 1.207 12 H -0.207 1.207 13 H -0.159 1.159 14 C 0.292 3.708 15 O -0.428 6.428 16 C 0.272 3.728 17 O -0.346 6.346 18 N -0.287 5.287 19 C -0.012 4.012 20 C -0.045 4.045 21 N -0.178 5.178 22 C -0.026 4.026 23 C -0.218 4.218 24 C 0.255 3.745 25 F -0.198 7.198 26 F -0.201 7.201 27 C -0.095 4.095 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.275 0.725 37 H 0.216 0.784 38 H 0.229 0.771 39 H 0.204 0.796 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.953 -13.392 -0.010 16.685 hybrid contribution -1.252 1.270 0.118 1.788 sum 8.700 -12.122 0.108 14.921 Atomic orbital electron populations 1.24106 0.95033 1.03353 0.97374 1.23121 0.96715 0.97629 1.02708 1.20818 0.91914 0.97046 0.88709 1.47923 1.08101 1.60054 1.12541 1.19959 0.95929 0.94601 0.80229 1.21172 1.37765 0.94084 1.01492 0.95370 1.25530 0.96308 0.95314 1.00154 1.70029 1.49304 1.11908 1.27234 0.85970 0.79066 0.79591 0.79878 1.20702 1.20716 1.15892 1.19747 0.83712 0.79737 0.87559 1.90661 1.78618 1.46368 1.27191 1.20538 0.83830 0.79334 0.89148 1.90941 1.77615 1.38556 1.27510 1.42887 1.07218 1.65584 1.12978 1.18879 0.94454 0.96712 0.91122 1.23248 0.89519 0.95001 0.96685 1.67927 1.24370 1.23390 1.02119 1.23191 0.94683 0.87480 0.97204 1.21581 1.00161 1.01654 0.98435 1.21049 0.84859 0.77656 0.90944 1.92997 1.95611 1.44072 1.87084 1.93023 1.47776 1.96224 1.83059 1.21647 0.97245 0.96515 0.94134 0.86065 0.87699 0.87334 0.89292 0.89136 0.93672 0.93087 0.92704 0.72511 0.78361 0.77111 0.79629 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 14.32 67.78 0.97 -2.66 16 2 C -0.18 -5.02 9.84 25.65 0.25 -4.76 16 3 C 0.14 4.52 5.83 85.63 0.50 5.02 16 4 N -0.56 -22.46 2.46 -832.18 -2.05 -24.51 16 5 C 0.21 9.91 3.85 85.63 0.33 10.24 16 6 C -0.51 -28.57 8.35 25.60 0.21 -28.36 16 7 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 8 C 0.03 1.47 5.47 84.66 0.46 1.93 16 9 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 10 Si 0.93 44.90 27.47 68.60 1.88 46.79 16 11 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 14 C 0.51 20.05 7.67 87.24 0.67 20.72 16 15 O -0.55 -20.66 16.04 -3.26 -0.05 -20.71 16 16 C 0.49 19.20 7.58 87.24 0.66 19.86 16 17 O -0.48 -22.34 9.59 -3.30 -0.03 -22.37 16 18 N -0.64 -19.10 5.33 -304.52 -1.62 -20.72 16 19 C 0.09 2.45 6.32 38.30 0.24 2.69 16 20 C 0.12 2.47 11.13 84.87 0.94 3.41 16 21 N -0.47 -9.94 10.35 -195.26 -2.02 -11.96 16 22 C 0.13 2.50 10.82 84.68 0.92 3.42 16 23 C -0.22 -5.67 5.38 -19.79 -0.11 -5.77 16 24 C 0.31 7.75 5.47 71.23 0.39 8.13 16 25 F -0.22 -6.88 17.27 44.97 0.78 -6.10 16 26 F -0.22 -7.55 17.27 44.97 0.78 -6.78 16 27 C -0.07 -2.31 8.40 22.60 0.19 -2.12 16 28 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.10 2.27 7.84 -2.91 -0.02 2.25 16 30 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.09 2.94 7.76 -2.39 -0.02 2.92 16 32 H 0.09 2.94 7.36 -2.39 -0.02 2.92 16 33 H 0.05 1.98 7.08 -2.39 -0.02 1.97 16 34 H 0.05 2.46 5.26 -2.38 -0.01 2.45 16 35 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 36 H 0.43 10.32 8.30 -92.71 -0.77 9.55 16 37 H 0.20 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.21 1.83 7.95 -2.91 -0.02 1.81 16 39 H 0.19 2.13 7.89 -2.39 -0.02 2.11 16 40 H 0.12 5.19 6.30 -2.91 -0.02 5.17 16 Total: -1.00 -78.48 357.21 4.88 -73.60 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.28 Total: 20.50 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: 6.64 Total: 31.75 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -5.39 Total: -116.67 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.08 Total: -43.09 kcal Atomic # 9 Polarization: -14.43 SS G_CDS: 1.55 Total: -12.88 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Total: -78.48 4.88 -73.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873890183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.131 kcal (2) G-P(sol) polarization free energy of solvation -78.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds