Wall clock time and date at job start Tue Mar 31 2020 22:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47022 * 299.99874 * 3 2 1 6 6 H 1.48506 * 109.47020 * 60.00099 * 3 2 1 7 7 C 1.38954 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99912 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99915 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99762 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00027 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.46966 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99978 * 180.02562 * 13 12 10 15 15 O 1.21586 * 120.00193 * 5.13878 * 14 13 12 16 16 N 1.34778 * 120.00253 * 185.14242 * 14 13 12 17 17 C 1.48181 * 118.51457 * 175.19161 * 16 14 13 18 18 C 1.54299 * 110.69539 * 138.77138 * 17 16 14 19 19 O 1.40528 * 109.86179 * 320.62025 * 18 17 16 20 20 C 1.42558 * 113.53645 * 95.29130 * 19 18 17 21 21 H 1.09002 * 108.64066 * 33.30429 * 20 19 18 22 22 C 1.52993 * 108.64752 * 151.14409 * 20 19 18 23 23 F 1.39896 * 109.47220 * 59.99868 * 22 20 19 24 24 F 1.39899 * 109.47067 * 179.97438 * 22 20 19 25 25 F 1.39902 * 109.47337 * 299.99899 * 22 20 19 26 26 C 1.47692 * 113.66573 * 272.22771 * 20 19 18 27 27 C 1.44460 * 118.50730 * 355.19920 * 16 14 13 28 28 H 0.96998 * 120.00500 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00460 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47495 * 59.99757 * 12 10 9 31 31 H 1.09002 * 109.47216 * 299.99932 * 12 10 9 32 32 H 0.96994 * 120.00442 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.23087 * 18.46731 * 17 16 14 34 34 H 1.08991 * 109.23936 * 259.08530 * 17 16 14 35 35 H 1.08993 * 109.40488 * 200.50323 * 18 17 16 36 36 H 1.08994 * 109.40544 * 80.73811 * 18 17 16 37 37 H 1.08996 * 109.43552 * 180.86811 * 26 20 19 38 38 H 1.08993 * 109.43927 * 300.78569 * 26 20 19 39 39 H 1.09006 * 109.49340 * 148.97655 * 27 16 14 40 40 H 1.08999 * 109.52501 * 28.89900 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5579 0.0026 11 8 3.2102 -3.5579 0.0022 12 6 1.2438 -4.8630 0.0032 13 7 2.1958 -5.9765 0.0050 14 6 1.7465 -7.2472 0.0052 15 8 0.5553 -7.4709 -0.0903 16 7 2.6178 -8.2700 0.1114 17 6 2.0820 -9.6475 0.2171 18 6 2.9175 -10.6245 -0.6363 19 8 3.2784 -10.0113 -1.8482 20 6 4.5723 -9.4135 -1.8205 21 1 5.2169 -10.0078 -1.1729 22 6 5.1524 -9.4371 -3.2360 23 9 4.3145 -8.7183 -4.0954 24 9 6.4236 -8.8531 -3.2288 25 9 5.2492 -10.7608 -3.6784 26 6 4.5708 -8.0190 -1.3340 27 6 4.0316 -7.9736 0.1172 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0016 30 1 0.6174 -4.9214 -0.8869 31 1 0.6168 -4.9202 0.8930 32 1 3.1494 -5.7993 0.0052 33 1 1.0494 -9.6589 -0.1317 34 1 2.1118 -9.9655 1.2592 35 1 2.3291 -11.5182 -0.8439 36 1 3.8180 -10.9039 -0.0896 37 1 5.5873 -7.6263 -1.3557 38 1 3.9334 -7.4114 -1.9762 39 1 4.5558 -8.7126 0.7233 40 1 4.1938 -6.9798 0.5346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875578810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:02 Heat of formation + Delta-G solvation = -245.695488 kcal Electronic energy + Delta-G solvation = -30546.061966 eV Core-core repulsion = 25560.808189 eV Total energy + Delta-G solvation = -4985.253776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.37715 -47.91464 -47.79015 -40.82742 -39.22648 -38.16224 -35.62261 -34.62739 -33.98902 -33.49148 -31.38823 -29.62141 -28.45583 -27.28521 -24.57219 -24.47150 -22.75301 -22.22361 -19.75719 -19.70487 -18.93936 -18.71992 -18.65515 -18.15351 -17.79347 -17.31691 -16.14090 -15.98631 -15.59737 -15.22656 -15.15011 -14.81226 -14.65165 -14.61123 -14.35736 -14.25547 -14.18026 -13.99188 -13.96223 -13.86246 -13.59775 -13.40231 -13.25803 -13.03320 -12.33456 -12.11559 -12.00473 -11.82770 -11.64022 -11.47113 -11.31681 -11.14851 -10.41574 -10.33917 -10.32253 -9.99655 -9.65454 -9.00263 -8.63980 -8.57120 -8.10760 -6.52098 -3.94126 2.15693 2.56632 2.98567 3.09686 3.22122 3.26270 3.28645 3.42016 3.63431 3.73903 3.92041 4.07812 4.13960 4.33632 4.36438 4.53769 4.59735 4.72135 4.85750 4.87960 4.95300 5.08447 5.16708 5.29634 5.35590 5.60349 5.68785 5.89710 5.99660 6.07034 6.37270 6.52532 6.71232 6.86525 7.45574 7.91807 8.08495 8.44125 8.70421 9.03958 9.38782 9.86308 10.64838 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.002661 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.704757 B =10518.121101 C =11614.563804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.126 3.874 13 N -0.724 5.724 14 C 0.705 3.295 15 O -0.591 6.591 16 N -0.625 5.625 17 C 0.102 3.898 18 C 0.050 3.950 19 O -0.343 6.343 20 C 0.061 3.939 21 H 0.100 0.900 22 C 0.454 3.546 23 F -0.171 7.171 24 F -0.176 7.176 25 F -0.180 7.180 26 C -0.187 4.187 27 C 0.117 3.883 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 -22.075 -0.395 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.215 3.785 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.406 3.594 15 O -0.470 6.470 16 N -0.363 5.363 17 C -0.021 4.021 18 C -0.028 4.028 19 O -0.261 6.261 20 C 0.002 3.998 21 H 0.118 0.882 22 C 0.400 3.600 23 F -0.152 7.152 24 F -0.158 7.158 25 F -0.161 7.161 26 C -0.226 4.226 27 C -0.008 4.008 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.246 0.754 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.414 -22.042 -0.637 23.602 hybrid contribution 0.511 0.969 -0.085 1.098 sum 8.925 -21.073 -0.722 22.897 Atomic orbital electron populations 1.69622 1.06015 1.28438 1.49340 1.25330 0.95663 0.99941 0.96799 0.85761 0.79674 0.80834 0.77830 1.19132 1.20601 1.20630 1.19775 0.93475 0.81973 1.48171 0.87619 1.41794 1.09509 1.04456 1.62560 1.19743 0.88279 0.84990 0.85538 1.90480 1.13742 1.86875 1.57487 1.20811 0.91291 0.84919 1.03202 1.44981 1.11313 1.03357 1.78658 1.15840 0.85027 0.80705 0.77786 1.90891 1.14375 1.83845 1.57851 1.46842 1.05083 1.05865 1.78536 1.22508 1.00485 0.79673 0.99483 1.23078 0.99419 0.95462 0.84830 1.87556 1.31257 1.72610 1.34675 1.22124 0.87850 0.98409 0.91449 0.88249 1.20502 0.76202 0.73833 0.89492 1.93232 1.71103 1.77988 1.72906 1.93204 1.41274 1.84418 1.96868 1.93195 1.96021 1.35700 1.91191 1.22239 1.05031 0.95486 0.99816 1.21384 0.81580 1.03380 0.94483 0.91626 0.77009 0.89880 0.90058 0.75391 0.87920 0.90893 0.87501 0.91998 0.87591 0.88683 0.89890 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 13.05 55.50 0.72 -23.07 16 2 C 0.03 0.66 5.50 -17.46 -0.10 0.57 16 3 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 16 10 C 0.43 9.73 7.85 -10.98 -0.09 9.64 16 11 O -0.60 -14.99 15.24 5.55 0.08 -14.90 16 12 C 0.13 2.34 6.16 -5.20 -0.03 2.31 16 13 N -0.72 -12.08 5.36 -66.42 -0.36 -12.43 16 14 C 0.71 11.37 8.21 -86.92 -0.71 10.65 16 15 O -0.59 -11.44 15.63 5.29 0.08 -11.36 16 16 N -0.63 -7.31 2.55 -177.65 -0.45 -7.77 16 17 C 0.10 0.93 6.59 -2.44 -0.02 0.92 16 18 C 0.05 0.34 6.50 37.84 0.25 0.58 16 19 O -0.34 -3.45 9.68 -34.10 -0.33 -3.78 16 20 C 0.06 0.52 2.03 -29.30 -0.06 0.46 16 21 H 0.10 0.53 7.28 -51.93 -0.38 0.15 16 22 C 0.45 4.61 2.80 37.15 0.10 4.71 16 23 F -0.17 -2.17 16.78 2.25 0.04 -2.14 16 24 F -0.18 -1.72 16.46 2.25 0.04 -1.69 16 25 F -0.18 -1.87 17.24 2.25 0.04 -1.84 16 26 C -0.19 -1.69 5.04 -28.30 -0.14 -1.84 16 27 C 0.12 1.03 5.28 -4.14 -0.02 1.01 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.41 6.53 4.98 -40.82 -0.20 6.32 16 33 H 0.10 1.17 6.96 -51.93 -0.36 0.81 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.26 7.20 -51.93 -0.37 -0.11 16 37 H 0.11 0.78 7.48 -51.93 -0.39 0.39 16 38 H 0.09 1.14 7.81 -51.93 -0.41 0.74 16 39 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 40 H 0.10 0.92 6.01 -51.93 -0.31 0.61 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -33.17 345.53 -5.34 -38.51 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -4.37 Total: 12.77 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: -0.96 Total: 20.66 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.14 Total: -56.83 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.16 Total: -30.05 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.11 Total: -5.66 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.17 -5.34 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875578810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.188 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds