Wall clock time and date at job start Tue Mar 31 2020 22:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47022 * 299.99874 * 3 2 1 6 6 H 1.48506 * 109.47020 * 60.00099 * 3 2 1 7 7 C 1.38954 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99912 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99915 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99762 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00027 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.46966 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99978 * 180.02562 * 13 12 10 15 15 O 1.21586 * 120.00193 * 5.13878 * 14 13 12 16 16 N 1.34778 * 120.00253 * 185.14242 * 14 13 12 17 17 C 1.48181 * 118.51457 * 175.19161 * 16 14 13 18 18 C 1.54299 * 110.69539 * 138.77138 * 17 16 14 19 19 O 1.40528 * 109.86179 * 320.62025 * 18 17 16 20 20 C 1.42558 * 113.53645 * 95.29130 * 19 18 17 21 21 H 1.09002 * 108.64066 * 33.30429 * 20 19 18 22 22 C 1.52993 * 108.64752 * 151.14409 * 20 19 18 23 23 F 1.39896 * 109.47220 * 59.99868 * 22 20 19 24 24 F 1.39899 * 109.47067 * 179.97438 * 22 20 19 25 25 F 1.39902 * 109.47337 * 299.99899 * 22 20 19 26 26 C 1.47692 * 113.66573 * 272.22771 * 20 19 18 27 27 C 1.44460 * 118.50730 * 355.19920 * 16 14 13 28 28 H 0.96998 * 120.00500 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00460 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47495 * 59.99757 * 12 10 9 31 31 H 1.09002 * 109.47216 * 299.99932 * 12 10 9 32 32 H 0.96994 * 120.00442 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.23087 * 18.46731 * 17 16 14 34 34 H 1.08991 * 109.23936 * 259.08530 * 17 16 14 35 35 H 1.08993 * 109.40488 * 200.50323 * 18 17 16 36 36 H 1.08994 * 109.40544 * 80.73811 * 18 17 16 37 37 H 1.08996 * 109.43552 * 180.86811 * 26 20 19 38 38 H 1.08993 * 109.43927 * 300.78569 * 26 20 19 39 39 H 1.09006 * 109.49340 * 148.97655 * 27 16 14 40 40 H 1.08999 * 109.52501 * 28.89900 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5579 0.0026 11 8 3.2102 -3.5579 0.0022 12 6 1.2438 -4.8630 0.0032 13 7 2.1958 -5.9765 0.0050 14 6 1.7465 -7.2472 0.0052 15 8 0.5553 -7.4709 -0.0903 16 7 2.6178 -8.2700 0.1114 17 6 2.0820 -9.6475 0.2171 18 6 2.9175 -10.6245 -0.6363 19 8 3.2784 -10.0113 -1.8482 20 6 4.5723 -9.4135 -1.8205 21 1 5.2169 -10.0078 -1.1729 22 6 5.1524 -9.4371 -3.2360 23 9 4.3145 -8.7183 -4.0954 24 9 6.4236 -8.8531 -3.2288 25 9 5.2492 -10.7608 -3.6784 26 6 4.5708 -8.0190 -1.3340 27 6 4.0316 -7.9736 0.1172 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0016 30 1 0.6174 -4.9214 -0.8869 31 1 0.6168 -4.9202 0.8930 32 1 3.1494 -5.7993 0.0052 33 1 1.0494 -9.6589 -0.1317 34 1 2.1118 -9.9655 1.2592 35 1 2.3291 -11.5182 -0.8439 36 1 3.8180 -10.9039 -0.0896 37 1 5.5873 -7.6263 -1.3557 38 1 3.9334 -7.4114 -1.9762 39 1 4.5558 -8.7126 0.7233 40 1 4.1938 -6.9798 0.5346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875578810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:01 Heat of formation + Delta-G solvation = -270.449631 kcal Electronic energy + Delta-G solvation = -30547.135386 eV Core-core repulsion = 25560.808189 eV Total energy + Delta-G solvation = -4986.327197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.18001 -48.69264 -48.65030 -41.81585 -40.41929 -39.73804 -36.59697 -36.27876 -35.40893 -34.49704 -33.36663 -30.55274 -29.23951 -28.71182 -26.38043 -25.23964 -23.67462 -22.89740 -21.42358 -20.90573 -20.15414 -19.72369 -19.58584 -19.40967 -18.86776 -18.14151 -17.48638 -17.06968 -16.95510 -16.55379 -16.34170 -16.06305 -15.81747 -15.59932 -15.51738 -15.40038 -15.09908 -15.07759 -14.83958 -14.80895 -14.78820 -14.40238 -14.21084 -13.89394 -13.79379 -13.54335 -13.50081 -12.92166 -12.90895 -12.68412 -12.44004 -12.15688 -12.10563 -11.88181 -11.57529 -11.28548 -11.00224 -10.55395 -10.31129 -10.09166 -9.57795 -8.50744 -6.00888 1.35412 1.41788 1.44641 1.53272 1.59140 1.89198 2.06284 2.27128 2.31870 2.68546 2.82087 2.92234 3.15753 3.16714 3.37719 3.67710 3.72569 3.87747 4.01604 4.13601 4.20035 4.24240 4.27864 4.41190 4.45038 4.60952 4.66127 4.69819 4.87339 4.97267 5.30674 5.39349 5.55241 5.76999 5.92561 5.96364 6.47908 6.87865 7.03707 7.41180 7.48968 7.94087 8.66472 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.002661 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.704757 B =10518.121101 C =11614.563804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.139 3.861 13 N -0.725 5.725 14 C 0.700 3.300 15 O -0.630 6.630 16 N -0.617 5.617 17 C 0.095 3.905 18 C 0.050 3.950 19 O -0.372 6.372 20 C 0.063 3.937 21 H 0.144 0.856 22 C 0.449 3.551 23 F -0.193 7.193 24 F -0.175 7.175 25 F -0.182 7.182 26 C -0.183 4.183 27 C 0.112 3.888 28 H 0.280 0.720 29 H 0.398 0.602 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.129 0.871 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -23.388 0.630 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.106 0.894 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.510 6.510 12 C 0.011 3.989 13 N -0.385 5.385 14 C 0.401 3.599 15 O -0.511 6.511 16 N -0.353 5.353 17 C -0.027 4.027 18 C -0.027 4.027 19 O -0.290 6.290 20 C 0.004 3.996 21 H 0.161 0.839 22 C 0.395 3.605 23 F -0.175 7.175 24 F -0.157 7.157 25 F -0.163 7.163 26 C -0.222 4.222 27 C -0.011 4.011 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.250 0.750 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.891 -23.403 0.392 25.410 hybrid contribution 0.085 1.276 -0.422 1.347 sum 9.976 -22.127 -0.030 24.272 Atomic orbital electron populations 1.69690 1.07047 1.29563 1.49397 1.26139 0.96523 1.02710 0.95814 0.84808 0.78191 0.76705 0.78254 1.19293 1.19784 1.19618 1.19783 0.92988 0.83466 1.50237 0.89443 1.41841 1.09584 1.04609 1.63433 1.20361 0.88126 0.85806 0.83531 1.90455 1.15021 1.87528 1.57989 1.20584 0.91142 0.83362 1.03851 1.44907 1.11042 1.03361 1.79183 1.16058 0.85144 0.81101 0.77609 1.90861 1.16233 1.84399 1.59644 1.46982 1.05733 1.05732 1.76866 1.22776 0.99490 0.78742 1.01663 1.23286 1.00895 0.94707 0.83795 1.87548 1.32077 1.72920 1.36436 1.22261 0.88191 0.98531 0.90596 0.83852 1.20875 0.76063 0.73419 0.90153 1.93188 1.71856 1.78563 1.73851 1.93202 1.41157 1.84406 1.96886 1.93186 1.96019 1.35745 1.91350 1.22211 1.05229 0.95636 0.99171 1.21640 0.80105 1.04455 0.94941 0.91096 0.76760 0.89618 0.88925 0.75004 0.90908 0.88130 0.85766 0.88098 0.85786 0.92418 0.85271 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.66 29.55 68.60 2.03 43.68 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.34 -18.42 9.68 84.04 0.81 -17.61 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.13 5.29 -306.98 -1.62 -29.76 16 10 C 0.43 20.07 7.85 87.66 0.69 20.76 16 11 O -0.62 -31.63 15.24 -3.07 -0.05 -31.67 16 12 C 0.14 5.23 6.16 85.63 0.53 5.76 16 13 N -0.73 -24.30 5.36 -482.31 -2.58 -26.88 16 14 C 0.70 22.46 8.21 179.05 1.47 23.93 16 15 O -0.63 -24.73 15.63 -3.99 -0.06 -24.79 16 16 N -0.62 -13.43 2.55 -834.23 -2.13 -15.56 16 17 C 0.10 1.54 6.59 86.50 0.57 2.11 16 18 C 0.05 0.50 6.50 72.42 0.47 0.97 16 19 O -0.37 -6.65 9.68 -144.93 -1.40 -8.06 16 20 C 0.06 0.91 2.03 28.93 0.06 0.96 16 21 H 0.14 0.78 7.28 -2.39 -0.02 0.76 16 22 C 0.45 8.52 2.80 71.98 0.20 8.72 16 23 F -0.19 -4.97 16.78 44.97 0.75 -4.21 16 24 F -0.18 -3.16 16.46 44.97 0.74 -2.42 16 25 F -0.18 -3.50 17.24 44.97 0.78 -2.73 16 26 C -0.18 -3.01 5.04 29.57 0.15 -2.86 16 27 C 0.11 1.69 5.28 87.40 0.46 2.15 16 28 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.40 19.38 7.90 -92.71 -0.73 18.64 16 30 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.41 13.18 4.98 -92.71 -0.46 12.72 16 33 H 0.07 1.64 6.96 -2.39 -0.02 1.62 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.26 7.20 -2.39 -0.02 0.25 16 37 H 0.12 1.55 7.48 -2.39 -0.02 1.53 16 38 H 0.06 1.40 7.81 -2.39 -0.02 1.38 16 39 H 0.13 0.81 8.10 -2.38 -0.02 0.79 16 40 H 0.09 1.50 6.01 -2.39 -0.01 1.49 16 Total: -1.00 -73.98 345.53 2.55 -71.43 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.06 Total: 34.74 kcal Atomic # 6 Polarization: 38.90 SS G_CDS: 5.88 Total: 44.77 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -6.05 Total: -120.75 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -1.51 Total: -64.52 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 2.27 Total: -9.36 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -73.98 2.55 -71.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875578810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.016 kcal (2) G-P(sol) polarization free energy of solvation -73.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds