Wall clock time and date at job start Tue Mar 31 2020 22:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99413 * 2 1 4 4 H 1.48506 * 109.46755 * 239.99559 * 3 2 1 5 5 H 1.48497 * 109.47486 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47412 * 119.99842 * 3 2 1 7 7 C 1.38944 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99922 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00213 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99838 * 180.27577 * 10 9 7 13 13 N 1.46511 * 109.47115 * 179.72930 * 12 10 9 14 14 C 1.34774 * 120.00020 * 180.02562 * 13 12 10 15 15 O 1.21589 * 119.99976 * 354.84803 * 14 13 12 16 16 N 1.34776 * 119.99816 * 174.85201 * 14 13 12 17 17 C 1.48179 * 118.51246 * 184.53096 * 16 14 13 18 18 C 1.53925 * 110.90221 * 221.11152 * 17 16 14 19 19 O 1.40523 * 109.71920 * 39.66722 * 18 17 16 20 20 C 1.42564 * 113.54509 * 264.61055 * 19 18 17 21 21 H 1.09000 * 108.64660 * 326.68136 * 20 19 18 22 22 C 1.53001 * 108.64604 * 208.84013 * 20 19 18 23 23 F 1.39905 * 109.47022 * 295.88312 * 22 20 19 24 24 F 1.39895 * 109.47296 * 55.88126 * 22 20 19 25 25 F 1.39895 * 109.47184 * 175.88150 * 22 20 19 26 26 C 1.47688 * 113.66255 * 87.75647 * 20 19 18 27 27 C 1.44460 * 118.51570 * 4.80035 * 16 14 13 28 28 H 0.96996 * 119.99945 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00050 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47394 * 299.72304 * 12 10 9 31 31 H 1.08999 * 109.47530 * 59.72825 * 12 10 9 32 32 H 0.97001 * 119.99582 * 359.97438 * 13 12 10 33 33 H 1.09005 * 109.23357 * 341.54067 * 17 16 14 34 34 H 1.08995 * 109.23312 * 100.91245 * 17 16 14 35 35 H 1.09000 * 109.55649 * 279.54251 * 18 17 16 36 36 H 1.08995 * 109.33437 * 159.65587 * 18 17 16 37 37 H 1.08999 * 109.43237 * 179.13125 * 26 20 19 38 38 H 1.09007 * 109.43437 * 59.26824 * 26 20 19 39 39 H 1.08998 * 109.49146 * 211.01977 * 27 16 14 40 40 H 1.09003 * 109.49285 * 331.07196 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6967 1.2125 7 6 2.0090 -1.2032 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2440 -4.8628 -0.0057 13 7 2.1962 -5.9764 -0.0110 14 6 1.7470 -7.2470 -0.0176 15 8 0.5556 -7.4712 0.0753 16 7 2.6185 -8.2693 -0.1271 17 6 2.0832 -9.6469 -0.2335 18 6 2.9174 -10.6269 0.6108 19 8 3.2766 -10.0191 1.8258 20 6 4.5705 -9.4210 1.8026 21 1 5.2163 -10.0124 1.1535 22 6 5.1485 -9.4505 3.2190 23 9 4.3604 -8.6582 4.0608 24 9 5.1575 -10.7671 3.6916 25 9 6.4558 -8.9530 3.1996 26 6 4.5695 -8.0245 1.3220 27 6 4.0324 -7.9729 -0.1296 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6174 -4.9249 0.8839 31 1 0.6174 -4.9164 -0.8960 32 1 3.1498 -5.7990 -0.0104 33 1 1.0513 -9.6592 0.1175 34 1 2.1108 -9.9633 -1.2762 35 1 3.8187 -10.9039 0.0640 36 1 2.3278 -11.5209 0.8135 37 1 5.5859 -7.6316 1.3470 38 1 3.9316 -7.4196 1.9666 39 1 4.5573 -8.7092 -0.7381 40 1 4.1946 -6.9773 -0.5428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875578813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:05 Heat of formation + Delta-G solvation = -245.688950 kcal Electronic energy + Delta-G solvation = -30546.572018 eV Core-core repulsion = 25561.318526 eV Total energy + Delta-G solvation = -4985.253493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.37662 -47.91025 -47.79386 -40.83265 -39.22743 -38.15950 -35.62138 -34.62908 -33.99478 -33.49235 -31.38825 -29.63783 -28.45416 -27.28747 -24.56952 -24.47046 -22.74534 -22.22455 -19.75562 -19.70307 -18.94064 -18.71696 -18.65324 -18.15100 -17.79444 -17.31987 -16.15105 -15.98524 -15.59603 -15.22649 -15.15226 -14.79569 -14.66143 -14.61022 -14.36033 -14.25238 -14.18524 -13.99371 -13.96299 -13.85813 -13.59848 -13.39621 -13.26616 -13.02413 -12.33386 -12.10826 -12.00432 -11.82380 -11.63390 -11.47577 -11.31704 -11.10830 -10.51293 -10.33589 -10.31655 -9.99517 -9.63181 -9.00224 -8.63784 -8.57042 -8.10622 -6.51750 -3.93988 2.15700 2.56589 2.98558 3.13228 3.21343 3.24894 3.26521 3.41973 3.63672 3.74209 3.92191 4.07813 4.14019 4.33951 4.36443 4.54368 4.59835 4.72287 4.85921 4.88041 4.95036 5.08288 5.16875 5.29546 5.35479 5.60510 5.69012 5.89900 5.99850 6.07191 6.37360 6.52484 6.71284 6.86607 7.45324 7.91535 8.08618 8.44348 8.70519 9.03914 9.38833 9.86497 10.65035 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002659 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.380522 B =10526.020907 C =11619.514131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.126 3.874 13 N -0.724 5.724 14 C 0.705 3.295 15 O -0.591 6.591 16 N -0.625 5.625 17 C 0.101 3.899 18 C 0.050 3.950 19 O -0.344 6.344 20 C 0.061 3.939 21 H 0.100 0.900 22 C 0.454 3.546 23 F -0.171 7.171 24 F -0.179 7.179 25 F -0.177 7.177 26 C -0.187 4.187 27 C 0.117 3.883 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 -22.040 0.359 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.214 3.786 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.406 3.594 15 O -0.470 6.470 16 N -0.363 5.363 17 C -0.022 4.022 18 C -0.028 4.028 19 O -0.261 6.261 20 C 0.002 3.998 21 H 0.118 0.882 22 C 0.400 3.600 23 F -0.153 7.153 24 F -0.160 7.160 25 F -0.158 7.158 26 C -0.226 4.226 27 C -0.008 4.008 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.246 0.754 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.365 -22.003 0.597 23.547 hybrid contribution 0.538 0.960 0.089 1.104 sum 8.904 -21.043 0.686 22.859 Atomic orbital electron populations 1.69607 1.06013 1.28653 1.49171 1.25324 0.95659 0.99927 0.96752 0.85874 0.78783 0.80166 0.79148 1.19789 1.20855 1.19758 1.19678 0.93428 0.82005 1.48426 0.87723 1.41778 1.09501 1.04436 1.62531 1.19737 0.88280 0.84987 0.85578 1.90479 1.13742 1.86874 1.57530 1.20811 0.91286 0.84919 1.03198 1.44985 1.11314 1.03357 1.78648 1.15838 0.85027 0.80704 0.77784 1.90892 1.14359 1.83827 1.57889 1.46841 1.05080 1.05875 1.78506 1.22432 1.00481 0.79700 0.99553 1.23024 0.99430 0.95560 0.84761 1.87556 1.31264 1.72768 1.34553 1.22127 0.87860 0.98383 0.91460 0.88248 1.20502 0.76130 0.73906 0.89496 1.93234 1.73966 1.74137 1.73927 1.93193 1.96262 1.36294 1.90280 1.93204 1.38072 1.87683 1.96846 1.22236 1.05024 0.95464 0.99856 1.21381 0.81590 1.03385 0.94467 0.91515 0.76999 0.89891 0.90052 0.75390 0.87918 0.90929 0.91969 0.87494 0.87651 0.88625 0.89890 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 13.05 55.50 0.72 -23.09 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.50 5.29 -10.96 -0.06 -13.55 16 10 C 0.43 9.73 7.85 -10.99 -0.09 9.64 16 11 O -0.60 -15.00 15.24 5.55 0.08 -14.92 16 12 C 0.13 2.34 6.16 -5.19 -0.03 2.31 16 13 N -0.72 -12.09 5.36 -66.41 -0.36 -12.44 16 14 C 0.71 11.37 8.21 -86.92 -0.71 10.66 16 15 O -0.59 -11.45 15.63 5.29 0.08 -11.36 16 16 N -0.63 -7.32 2.56 -177.89 -0.46 -7.77 16 17 C 0.10 0.93 6.55 -2.64 -0.02 0.91 16 18 C 0.05 0.34 6.49 37.64 0.24 0.58 16 19 O -0.34 -3.46 9.66 -34.09 -0.33 -3.79 16 20 C 0.06 0.52 2.03 -29.30 -0.06 0.46 16 21 H 0.10 0.53 7.28 -51.93 -0.38 0.15 16 22 C 0.45 4.61 2.81 37.16 0.10 4.71 16 23 F -0.17 -2.17 16.67 2.25 0.04 -2.13 16 24 F -0.18 -1.88 17.17 2.25 0.04 -1.85 16 25 F -0.18 -1.72 16.62 2.25 0.04 -1.68 16 26 C -0.19 -1.70 5.04 -28.31 -0.14 -1.84 16 27 C 0.12 1.03 5.28 -4.15 -0.02 1.01 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.41 6.53 4.98 -40.82 -0.20 6.33 16 33 H 0.10 1.18 6.96 -51.93 -0.36 0.81 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.26 7.21 -51.93 -0.37 -0.11 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.77 7.59 -51.93 -0.39 0.38 16 38 H 0.10 1.15 7.70 -51.93 -0.40 0.75 16 39 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 40 H 0.10 0.92 6.01 -51.93 -0.31 0.61 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -33.13 345.47 -5.34 -38.47 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.37 Total: 12.85 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: -0.97 Total: 20.65 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.14 Total: -56.86 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.16 Total: -30.06 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.11 Total: -5.66 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.13 -5.34 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875578813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.218 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds