Wall clock time and date at job start Tue Mar 31 2020 22:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99413 * 2 1 4 4 H 1.48506 * 109.46755 * 239.99559 * 3 2 1 5 5 H 1.48497 * 109.47486 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47412 * 119.99842 * 3 2 1 7 7 C 1.38944 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99922 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00213 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99838 * 180.27577 * 10 9 7 13 13 N 1.46511 * 109.47115 * 179.72930 * 12 10 9 14 14 C 1.34774 * 120.00020 * 180.02562 * 13 12 10 15 15 O 1.21589 * 119.99976 * 354.84803 * 14 13 12 16 16 N 1.34776 * 119.99816 * 174.85201 * 14 13 12 17 17 C 1.48179 * 118.51246 * 184.53096 * 16 14 13 18 18 C 1.53925 * 110.90221 * 221.11152 * 17 16 14 19 19 O 1.40523 * 109.71920 * 39.66722 * 18 17 16 20 20 C 1.42564 * 113.54509 * 264.61055 * 19 18 17 21 21 H 1.09000 * 108.64660 * 326.68136 * 20 19 18 22 22 C 1.53001 * 108.64604 * 208.84013 * 20 19 18 23 23 F 1.39905 * 109.47022 * 295.88312 * 22 20 19 24 24 F 1.39895 * 109.47296 * 55.88126 * 22 20 19 25 25 F 1.39895 * 109.47184 * 175.88150 * 22 20 19 26 26 C 1.47688 * 113.66255 * 87.75647 * 20 19 18 27 27 C 1.44460 * 118.51570 * 4.80035 * 16 14 13 28 28 H 0.96996 * 119.99945 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00050 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47394 * 299.72304 * 12 10 9 31 31 H 1.08999 * 109.47530 * 59.72825 * 12 10 9 32 32 H 0.97001 * 119.99582 * 359.97438 * 13 12 10 33 33 H 1.09005 * 109.23357 * 341.54067 * 17 16 14 34 34 H 1.08995 * 109.23312 * 100.91245 * 17 16 14 35 35 H 1.09000 * 109.55649 * 279.54251 * 18 17 16 36 36 H 1.08995 * 109.33437 * 159.65587 * 18 17 16 37 37 H 1.08999 * 109.43237 * 179.13125 * 26 20 19 38 38 H 1.09007 * 109.43437 * 59.26824 * 26 20 19 39 39 H 1.08998 * 109.49146 * 211.01977 * 27 16 14 40 40 H 1.09003 * 109.49285 * 331.07196 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6967 1.2125 7 6 2.0090 -1.2032 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2440 -4.8628 -0.0057 13 7 2.1962 -5.9764 -0.0110 14 6 1.7470 -7.2470 -0.0176 15 8 0.5556 -7.4712 0.0753 16 7 2.6185 -8.2693 -0.1271 17 6 2.0832 -9.6469 -0.2335 18 6 2.9174 -10.6269 0.6108 19 8 3.2766 -10.0191 1.8258 20 6 4.5705 -9.4210 1.8026 21 1 5.2163 -10.0124 1.1535 22 6 5.1485 -9.4505 3.2190 23 9 4.3604 -8.6582 4.0608 24 9 5.1575 -10.7671 3.6916 25 9 6.4558 -8.9530 3.1996 26 6 4.5695 -8.0245 1.3220 27 6 4.0324 -7.9729 -0.1296 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0005 30 1 0.6174 -4.9249 0.8839 31 1 0.6174 -4.9164 -0.8960 32 1 3.1498 -5.7990 -0.0104 33 1 1.0513 -9.6592 0.1175 34 1 2.1108 -9.9633 -1.2762 35 1 3.8187 -10.9039 0.0640 36 1 2.3278 -11.5209 0.8135 37 1 5.5859 -7.6316 1.3470 38 1 3.9316 -7.4196 1.9666 39 1 4.5573 -8.7092 -0.7381 40 1 4.1946 -6.9773 -0.5428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875578813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:04 Heat of formation + Delta-G solvation = -270.406999 kcal Electronic energy + Delta-G solvation = -30547.643873 eV Core-core repulsion = 25561.318526 eV Total energy + Delta-G solvation = -4986.325348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.17935 -48.69023 -48.65151 -41.81946 -40.42062 -39.73780 -36.59608 -36.27736 -35.40995 -34.50617 -33.36672 -30.56698 -29.23804 -28.71752 -26.37862 -25.23866 -23.66784 -22.89757 -21.42167 -20.90436 -20.15321 -19.72295 -19.58332 -19.40918 -18.86770 -18.14326 -17.48445 -17.07409 -16.95627 -16.54876 -16.34203 -16.07371 -15.81800 -15.60766 -15.51112 -15.39572 -15.09617 -15.07829 -14.84243 -14.80655 -14.78486 -14.40114 -14.20759 -13.89974 -13.78763 -13.53073 -13.49691 -12.91838 -12.89232 -12.67994 -12.46445 -12.16191 -12.13419 -11.88255 -11.55500 -11.28461 -11.00475 -10.55263 -10.31134 -10.09228 -9.57841 -8.50381 -6.00801 1.38528 1.41569 1.44583 1.52119 1.57082 1.89636 2.06375 2.27281 2.31978 2.68479 2.82109 2.92255 3.15971 3.16887 3.37941 3.68008 3.72505 3.88518 4.01707 4.13604 4.20089 4.24169 4.27793 4.41269 4.45106 4.60851 4.65977 4.69545 4.87474 4.97458 5.30572 5.38954 5.55264 5.76994 5.92388 5.96364 6.48036 6.87906 7.03546 7.41208 7.48996 7.94163 8.66364 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002659 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.380522 B =10526.020907 C =11619.514131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.139 3.861 13 N -0.725 5.725 14 C 0.700 3.300 15 O -0.630 6.630 16 N -0.616 5.616 17 C 0.095 3.905 18 C 0.050 3.950 19 O -0.372 6.372 20 C 0.063 3.937 21 H 0.144 0.856 22 C 0.449 3.551 23 F -0.193 7.193 24 F -0.182 7.182 25 F -0.175 7.175 26 C -0.184 4.184 27 C 0.112 3.888 28 H 0.280 0.720 29 H 0.398 0.602 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.058 0.942 39 H 0.129 0.871 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -23.362 -0.673 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.510 6.510 12 C 0.011 3.989 13 N -0.385 5.385 14 C 0.401 3.599 15 O -0.511 6.511 16 N -0.353 5.353 17 C -0.027 4.027 18 C -0.027 4.027 19 O -0.290 6.290 20 C 0.004 3.996 21 H 0.161 0.839 22 C 0.395 3.605 23 F -0.175 7.175 24 F -0.163 7.163 25 F -0.156 7.156 26 C -0.223 4.223 27 C -0.011 4.011 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.250 0.750 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.881 -23.373 -0.437 25.380 hybrid contribution 0.103 1.266 0.427 1.340 sum 9.984 -22.107 -0.010 24.257 Atomic orbital electron populations 1.69679 1.07057 1.29702 1.49254 1.26136 0.96517 1.02711 0.95759 0.84927 0.77714 0.76201 0.79146 1.19312 1.19728 1.19527 1.19719 0.93020 0.83491 1.50457 0.89411 1.41829 1.09578 1.04595 1.63407 1.20356 0.88131 0.85802 0.83570 1.90454 1.15009 1.87526 1.58021 1.20585 0.91140 0.83365 1.03845 1.44910 1.11044 1.03361 1.79175 1.16055 0.85145 0.81099 0.77607 1.90862 1.16218 1.84381 1.59680 1.46980 1.05731 1.05744 1.76833 1.22698 0.99491 0.78778 1.01720 1.23233 1.00908 0.94804 0.83720 1.87548 1.32083 1.73072 1.36317 1.22263 0.88207 0.98494 0.90611 0.83854 1.20875 0.76060 0.73407 0.90173 1.93190 1.74644 1.74801 1.74840 1.93183 1.96272 1.36395 1.90459 1.93203 1.37908 1.87654 1.96859 1.22208 1.05233 0.95624 0.99197 1.21637 0.80113 1.04444 0.94940 0.91074 0.76758 0.89622 0.88933 0.75001 0.90909 0.88177 0.88069 0.85758 0.85828 0.92359 0.85277 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 2 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 3 Si 1.00 41.62 29.55 68.60 2.03 43.64 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.34 -18.54 9.68 84.04 0.81 -17.73 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.12 5.29 -306.99 -1.62 -29.74 16 10 C 0.43 20.06 7.85 87.66 0.69 20.75 16 11 O -0.62 -31.61 15.24 -3.07 -0.05 -31.66 16 12 C 0.14 5.23 6.16 85.63 0.53 5.76 16 13 N -0.73 -24.31 5.36 -482.29 -2.58 -26.89 16 14 C 0.70 22.47 8.21 179.06 1.47 23.94 16 15 O -0.63 -24.74 15.63 -4.00 -0.06 -24.80 16 16 N -0.62 -13.44 2.56 -834.99 -2.14 -15.57 16 17 C 0.10 1.54 6.55 86.37 0.57 2.10 16 18 C 0.05 0.50 6.49 72.29 0.47 0.97 16 19 O -0.37 -6.65 9.66 -144.90 -1.40 -8.05 16 20 C 0.06 0.91 2.03 28.93 0.06 0.96 16 21 H 0.14 0.78 7.28 -2.39 -0.02 0.76 16 22 C 0.45 8.52 2.81 71.98 0.20 8.72 16 23 F -0.19 -4.96 16.67 44.97 0.75 -4.21 16 24 F -0.18 -3.55 17.17 44.97 0.77 -2.78 16 25 F -0.17 -3.12 16.62 44.97 0.75 -2.37 16 26 C -0.18 -3.01 5.04 29.57 0.15 -2.86 16 27 C 0.11 1.69 5.28 87.40 0.46 2.15 16 28 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 30 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.41 13.19 4.98 -92.71 -0.46 12.72 16 33 H 0.07 1.64 6.96 -2.38 -0.02 1.62 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 0.26 7.21 -2.39 -0.02 0.25 16 36 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.12 1.54 7.59 -2.39 -0.02 1.52 16 38 H 0.06 1.41 7.70 -2.38 -0.02 1.40 16 39 H 0.13 0.81 8.10 -2.39 -0.02 0.79 16 40 H 0.09 1.51 6.01 -2.39 -0.01 1.49 16 Total: -1.00 -73.88 345.47 2.54 -71.35 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.06 Total: 35.01 kcal Atomic # 6 Polarization: 38.82 SS G_CDS: 5.87 Total: 44.69 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -6.06 Total: -120.82 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -1.51 Total: -64.51 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 2.27 Total: -9.36 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -73.88 2.54 -71.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875578813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.062 kcal (2) G-P(sol) polarization free energy of solvation -73.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds