Wall clock time and date at job start Tue Mar 31 2020 22:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.50916 * 2 1 4 4 F 1.39901 * 109.46967 * 180.10105 * 3 2 1 5 5 F 1.39905 * 109.47290 * 300.09714 * 3 2 1 6 6 F 1.39897 * 109.47625 * 60.09986 * 3 2 1 7 7 C 1.53295 * 109.51072 * 120.09531 * 2 1 3 8 8 N 1.47153 * 108.38529 * 67.67690 * 7 2 1 9 9 C 1.34776 * 120.98423 * 230.51235 * 8 7 2 10 10 O 1.21583 * 119.99689 * 355.00477 * 9 8 7 11 11 N 1.34773 * 120.00068 * 175.00786 * 9 8 7 12 12 C 1.46503 * 120.00146 * 185.08056 * 11 9 8 13 13 C 1.50694 * 109.47305 * 179.97438 * 12 11 9 14 14 O 1.21293 * 119.99997 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99727 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99504 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99987 * 0.02562 * 16 15 13 18 18 C 1.38947 * 119.99661 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00238 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47035 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47101 * 119.99866 * 20 18 16 23 23 H 1.48501 * 109.47759 * 240.00136 * 20 18 16 24 24 C 1.47156 * 118.03460 * 50.53432 * 8 7 2 25 25 C 1.53297 * 108.38246 * 309.46254 * 24 8 7 26 26 O 1.42961 * 109.55617 * 239.86941 * 2 1 3 27 27 H 1.08999 * 109.46987 * 299.90104 * 1 2 3 28 28 H 1.08991 * 109.46874 * 59.90249 * 1 2 3 29 29 H 1.09000 * 109.46703 * 179.90082 * 1 2 3 30 30 H 1.09005 * 109.68259 * 187.39737 * 7 2 1 31 31 H 1.08996 * 109.68472 * 307.95395 * 7 2 1 32 32 H 0.97004 * 119.99939 * 5.07990 * 11 9 8 33 33 H 1.08998 * 109.46659 * 300.00448 * 12 11 9 34 34 H 1.09003 * 109.46829 * 60.00004 * 12 11 9 35 35 H 0.96988 * 120.00221 * 0.02562 * 15 13 12 36 36 H 0.97002 * 120.00315 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.68038 * 189.74622 * 24 8 7 38 38 H 1.08994 * 109.71385 * 69.20427 * 24 8 7 39 39 H 1.08996 * 109.51826 * 292.38290 * 25 24 8 40 40 H 1.08997 * 109.55695 * 172.25197 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 9 3.4400 1.4412 -0.0023 5 9 1.5733 2.1026 -1.1412 6 9 1.5770 2.1014 1.1434 7 6 2.0420 -0.7245 1.2501 8 7 1.6971 -2.1504 1.1342 9 6 1.0728 -2.7971 2.1384 10 8 0.8675 -2.2280 3.1930 11 7 0.6761 -4.0745 1.9735 12 6 -0.1000 -4.7417 3.0218 13 6 -0.4149 -6.1517 2.5933 14 8 -0.0287 -6.5594 1.5183 15 7 -1.1249 -6.9600 3.4052 16 6 -1.4109 -8.2430 3.0156 17 1 -1.0670 -8.6060 2.0583 18 6 -2.1433 -9.0761 3.8523 19 7 -2.5622 -8.6343 5.0168 20 14 -2.5337 -10.8240 3.3212 21 1 -1.9534 -11.0743 1.9773 22 1 -1.9512 -11.7797 4.2972 23 1 -4.0063 -11.0078 3.2670 24 6 2.0544 -2.8494 -0.1105 25 6 1.5417 -2.0213 -1.2943 26 8 2.0086 -0.6762 -1.1651 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5153 -0.8890 29 1 -0.3633 -1.0277 -0.0018 30 1 3.1240 -0.6133 1.3217 31 1 1.5697 -0.3037 2.1377 32 1 0.9045 -4.5522 1.1607 33 1 0.4793 -4.7628 3.9449 34 1 -1.0292 -4.1968 3.1883 35 1 -1.4334 -6.6341 4.2650 36 1 -3.0738 -9.2158 5.6008 37 1 1.5902 -3.8355 -0.1240 38 1 3.1375 -2.9525 -0.1763 39 1 0.4518 -2.0294 -1.2995 40 1 1.9134 -2.4477 -2.2260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875579224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:47 Heat of formation + Delta-G solvation = -243.616077 kcal Electronic energy + Delta-G solvation = -30514.894526 eV Core-core repulsion = 25529.730920 eV Total energy + Delta-G solvation = -4985.163606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.45961 -47.96677 -47.90687 -40.99544 -39.24999 -38.18306 -35.06953 -34.68665 -33.97227 -33.35347 -31.44022 -29.60421 -28.28170 -27.02633 -26.03085 -24.38111 -23.85395 -21.25455 -19.81099 -19.70696 -19.05602 -18.72200 -18.68541 -18.18621 -17.82597 -16.75693 -16.33719 -15.91590 -15.66446 -15.31024 -15.02190 -14.86750 -14.75167 -14.64325 -14.49527 -14.38735 -14.33876 -14.07767 -14.04432 -14.02389 -13.65117 -13.54233 -13.31631 -12.59923 -12.52257 -12.17062 -12.04286 -11.95379 -11.91917 -11.68505 -11.19055 -11.13882 -10.69023 -10.45632 -10.38234 -10.16956 -9.70640 -9.12006 -8.70924 -8.67604 -8.16331 -6.57084 -3.99383 2.00869 2.28303 2.93439 3.05612 3.11213 3.18906 3.25004 3.41602 3.54612 3.67514 3.75567 3.99181 4.06800 4.16246 4.29002 4.47835 4.67591 4.72058 4.82695 5.03108 5.09761 5.11626 5.14775 5.25274 5.31775 5.42641 5.65946 5.78816 5.90599 5.97144 6.05441 6.33439 6.57918 6.72918 7.40772 7.86228 7.92255 8.38064 8.54214 8.98725 9.32894 9.80083 10.59719 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.002236 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.234580 B =12516.782780 C =12891.196964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.058 3.942 3 C 0.475 3.525 4 F -0.173 7.173 5 F -0.172 7.172 6 F -0.170 7.170 7 C 0.111 3.889 8 N -0.631 5.631 9 C 0.712 3.288 10 O -0.587 6.587 11 N -0.721 5.721 12 C 0.126 3.874 13 C 0.428 3.572 14 O -0.600 6.600 15 N -0.547 5.547 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.893 5.893 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.071 3.929 25 C 0.047 3.953 26 O -0.356 6.356 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.406 0.594 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.396 0.604 36 H 0.274 0.726 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 17.697 -10.200 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.016 3.984 3 C 0.420 3.580 4 F -0.154 7.154 5 F -0.154 7.154 6 F -0.151 7.151 7 C -0.014 4.014 8 N -0.370 5.370 9 C 0.413 3.587 10 O -0.465 6.465 11 N -0.381 5.381 12 C -0.002 4.002 13 C 0.213 3.787 14 O -0.487 6.487 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.533 5.533 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.053 4.053 25 C -0.029 4.029 26 O -0.275 6.275 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.247 0.753 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.653 17.793 -10.085 21.837 hybrid contribution -0.354 -0.868 0.095 0.942 sum 7.299 16.925 -9.991 20.965 Atomic orbital electron populations 1.22421 0.91391 1.05386 1.04706 1.22859 0.96946 0.88559 0.90054 1.19832 0.75819 0.88422 0.73933 1.93211 1.29232 1.96890 1.96086 1.93205 1.88293 1.82926 1.50937 1.93223 1.88583 1.82634 1.50707 1.21960 1.01613 0.80794 0.96985 1.47034 1.63544 1.09699 1.16711 1.15655 0.78235 0.81649 0.83148 1.90922 1.62358 1.67570 1.25625 1.44933 1.58195 1.11508 1.23418 1.20840 0.96287 0.92520 0.90526 1.19708 0.85156 0.86958 0.86866 1.90484 1.58177 1.76145 1.23860 1.41794 1.46086 1.12041 1.18247 1.19774 1.32006 0.87182 1.04506 0.87597 1.25336 0.96528 1.00640 0.95196 1.69618 1.36686 1.37651 1.09367 0.85756 0.78180 0.81219 0.78919 1.19121 1.20577 1.20579 1.22446 1.02096 0.96922 0.83788 1.23187 1.00136 0.80580 0.99033 1.88003 1.71976 1.26701 1.40785 0.89629 0.90155 0.89517 0.89645 0.86547 0.75349 0.89760 0.89933 0.76989 0.91567 0.88070 0.89797 0.91200 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 7.85 37.16 0.29 -1.32 16 2 C 0.06 0.56 0.59 -90.47 -0.05 0.51 16 3 C 0.47 4.68 2.38 37.16 0.09 4.77 16 4 F -0.17 -1.80 16.63 2.25 0.04 -1.77 16 5 F -0.17 -1.77 16.74 2.25 0.04 -1.73 16 6 F -0.17 -1.66 16.45 2.25 0.04 -1.63 16 7 C 0.11 1.18 5.03 -3.53 -0.02 1.17 16 8 N -0.63 -7.38 2.54 -178.00 -0.45 -7.83 16 9 C 0.71 10.85 8.31 -86.92 -0.72 10.13 16 10 O -0.59 -10.72 15.85 5.29 0.08 -10.64 16 11 N -0.72 -11.33 5.44 -66.42 -0.36 -11.69 16 12 C 0.13 2.22 6.16 -5.19 -0.03 2.19 16 13 C 0.43 9.36 7.85 -10.99 -0.09 9.27 16 14 O -0.60 -14.58 15.24 5.55 0.08 -14.49 16 15 N -0.55 -13.10 5.29 -10.96 -0.06 -13.16 16 16 C -0.31 -8.06 9.68 -14.93 -0.14 -8.20 16 17 H 0.11 2.91 7.16 -52.48 -0.38 2.54 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.34 13.05 55.50 0.72 -22.62 16 20 Si 0.93 20.03 29.55 -169.99 -5.02 15.01 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 C 0.07 0.63 6.63 -3.53 -0.02 0.61 16 25 C 0.05 0.36 6.60 37.31 0.25 0.61 16 26 O -0.36 -3.42 10.12 -35.23 -0.36 -3.78 16 27 H 0.08 0.74 7.81 -51.93 -0.41 0.34 16 28 H 0.08 0.64 7.80 -51.93 -0.41 0.23 16 29 H 0.09 0.81 6.11 -51.93 -0.32 0.50 16 30 H 0.09 0.85 7.62 -51.93 -0.40 0.46 16 31 H 0.12 1.35 7.01 -51.93 -0.36 0.98 16 32 H 0.41 6.14 4.95 -40.82 -0.20 5.93 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.40 9.15 7.90 -40.82 -0.32 8.83 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.10 0.91 5.66 -51.93 -0.29 0.62 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.53 6.25 -51.93 -0.32 0.20 16 40 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -30.89 343.95 -4.84 -35.74 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -4.23 Total: 13.10 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: -0.55 Total: 20.31 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.15 Total: -55.31 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.19 Total: -28.91 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.89 -4.84 -35.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875579224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.879 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds