Wall clock time and date at job start Tue Mar 31 2020 22:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.50916 * 2 1 4 4 F 1.39901 * 109.46967 * 180.10105 * 3 2 1 5 5 F 1.39905 * 109.47290 * 300.09714 * 3 2 1 6 6 F 1.39897 * 109.47625 * 60.09986 * 3 2 1 7 7 C 1.53295 * 109.51072 * 120.09531 * 2 1 3 8 8 N 1.47153 * 108.38529 * 67.67690 * 7 2 1 9 9 C 1.34776 * 120.98423 * 230.51235 * 8 7 2 10 10 O 1.21583 * 119.99689 * 355.00477 * 9 8 7 11 11 N 1.34773 * 120.00068 * 175.00786 * 9 8 7 12 12 C 1.46503 * 120.00146 * 185.08056 * 11 9 8 13 13 C 1.50694 * 109.47305 * 179.97438 * 12 11 9 14 14 O 1.21293 * 119.99997 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99727 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99504 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99987 * 0.02562 * 16 15 13 18 18 C 1.38947 * 119.99661 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00238 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47035 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47101 * 119.99866 * 20 18 16 23 23 H 1.48501 * 109.47759 * 240.00136 * 20 18 16 24 24 C 1.47156 * 118.03460 * 50.53432 * 8 7 2 25 25 C 1.53297 * 108.38246 * 309.46254 * 24 8 7 26 26 O 1.42961 * 109.55617 * 239.86941 * 2 1 3 27 27 H 1.08999 * 109.46987 * 299.90104 * 1 2 3 28 28 H 1.08991 * 109.46874 * 59.90249 * 1 2 3 29 29 H 1.09000 * 109.46703 * 179.90082 * 1 2 3 30 30 H 1.09005 * 109.68259 * 187.39737 * 7 2 1 31 31 H 1.08996 * 109.68472 * 307.95395 * 7 2 1 32 32 H 0.97004 * 119.99939 * 5.07990 * 11 9 8 33 33 H 1.08998 * 109.46659 * 300.00448 * 12 11 9 34 34 H 1.09003 * 109.46829 * 60.00004 * 12 11 9 35 35 H 0.96988 * 120.00221 * 0.02562 * 15 13 12 36 36 H 0.97002 * 120.00315 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.68038 * 189.74622 * 24 8 7 38 38 H 1.08994 * 109.71385 * 69.20427 * 24 8 7 39 39 H 1.08996 * 109.51826 * 292.38290 * 25 24 8 40 40 H 1.08997 * 109.55695 * 172.25197 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 9 3.4400 1.4412 -0.0023 5 9 1.5733 2.1026 -1.1412 6 9 1.5770 2.1014 1.1434 7 6 2.0420 -0.7245 1.2501 8 7 1.6971 -2.1504 1.1342 9 6 1.0728 -2.7971 2.1384 10 8 0.8675 -2.2280 3.1930 11 7 0.6761 -4.0745 1.9735 12 6 -0.1000 -4.7417 3.0218 13 6 -0.4149 -6.1517 2.5933 14 8 -0.0287 -6.5594 1.5183 15 7 -1.1249 -6.9600 3.4052 16 6 -1.4109 -8.2430 3.0156 17 1 -1.0670 -8.6060 2.0583 18 6 -2.1433 -9.0761 3.8523 19 7 -2.5622 -8.6343 5.0168 20 14 -2.5337 -10.8240 3.3212 21 1 -1.9534 -11.0743 1.9773 22 1 -1.9512 -11.7797 4.2972 23 1 -4.0063 -11.0078 3.2670 24 6 2.0544 -2.8494 -0.1105 25 6 1.5417 -2.0213 -1.2943 26 8 2.0086 -0.6762 -1.1651 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5153 -0.8890 29 1 -0.3633 -1.0277 -0.0018 30 1 3.1240 -0.6133 1.3217 31 1 1.5697 -0.3037 2.1377 32 1 0.9045 -4.5522 1.1607 33 1 0.4793 -4.7628 3.9449 34 1 -1.0292 -4.1968 3.1883 35 1 -1.4334 -6.6341 4.2650 36 1 -3.0738 -9.2158 5.6008 37 1 1.5902 -3.8355 -0.1240 38 1 3.1375 -2.9525 -0.1763 39 1 0.4518 -2.0294 -1.2995 40 1 1.9134 -2.4477 -2.2260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875579224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:46 Heat of formation + Delta-G solvation = -265.712101 kcal Electronic energy + Delta-G solvation = -30515.852682 eV Core-core repulsion = 25529.730920 eV Total energy + Delta-G solvation = -4986.121762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.25277 -48.75629 -48.71013 -41.97428 -40.50759 -39.72481 -36.29925 -36.06454 -35.44626 -34.27542 -33.35819 -30.37800 -29.63446 -27.88277 -27.22495 -26.00562 -24.64098 -22.22924 -21.42425 -20.71430 -20.22181 -19.85909 -19.55143 -19.48971 -18.84276 -17.72220 -17.53265 -17.21262 -16.94187 -16.56779 -16.15174 -16.02096 -15.90315 -15.75391 -15.59733 -15.42060 -15.17921 -15.14131 -15.06155 -14.87288 -14.83948 -14.73819 -14.10914 -14.00229 -13.61019 -13.54223 -13.26501 -13.16627 -12.91256 -12.70942 -12.67509 -12.43550 -12.10722 -11.96774 -11.57193 -11.47719 -11.35744 -10.55312 -10.36156 -10.08988 -9.68125 -8.50571 -6.00504 1.13625 1.34744 1.35740 1.44563 1.58013 1.87440 1.95945 2.17639 2.27373 2.57225 2.73524 2.74272 3.12968 3.17119 3.22202 3.36627 3.53855 3.76289 3.95111 4.07658 4.19677 4.26208 4.36150 4.40636 4.44045 4.45771 4.48957 4.68344 4.74753 4.97022 5.13249 5.23538 5.39587 5.63786 5.64312 5.92782 6.48062 6.74751 7.04295 7.32247 7.45891 7.94547 8.66508 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.002236 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.234580 B =12516.782780 C =12891.196964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.064 3.936 3 C 0.476 3.524 4 F -0.176 7.176 5 F -0.174 7.174 6 F -0.171 7.171 7 C 0.109 3.891 8 N -0.624 5.624 9 C 0.713 3.287 10 O -0.620 6.620 11 N -0.721 5.721 12 C 0.140 3.860 13 C 0.435 3.565 14 O -0.623 6.623 15 N -0.559 5.559 16 C -0.334 4.334 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.272 1.272 24 C 0.067 3.933 25 C 0.048 3.952 26 O -0.362 6.362 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.410 0.590 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.279 0.721 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 17.778 -11.192 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.022 3.978 3 C 0.421 3.579 4 F -0.158 7.158 5 F -0.155 7.155 6 F -0.152 7.152 7 C -0.015 4.015 8 N -0.362 5.362 9 C 0.414 3.586 10 O -0.500 6.500 11 N -0.380 5.380 12 C 0.011 3.989 13 C 0.222 3.778 14 O -0.511 6.511 15 N -0.195 5.195 16 C -0.463 4.463 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.819 3.181 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.197 1.197 24 C -0.056 4.056 25 C -0.028 4.028 26 O -0.281 6.281 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.251 0.749 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.895 17.900 -11.108 22.497 hybrid contribution -0.358 -0.818 0.350 0.959 sum 7.537 17.081 -10.759 21.548 Atomic orbital electron populations 1.22412 0.90840 1.05204 1.05232 1.22755 0.97262 0.88223 0.89603 1.19848 0.75631 0.88539 0.73837 1.93204 1.29549 1.96913 1.96099 1.93201 1.88297 1.82972 1.51034 1.93225 1.88558 1.82688 1.50725 1.22029 1.02043 0.80160 0.97273 1.47025 1.62317 1.10089 1.16732 1.15690 0.78252 0.81245 0.83399 1.90900 1.63755 1.68139 1.27218 1.44826 1.58274 1.11827 1.23097 1.20631 0.97309 0.89789 0.91128 1.20360 0.83357 0.88134 0.85962 1.90463 1.58610 1.77156 1.24854 1.41841 1.47038 1.11852 1.18733 1.19765 1.33493 0.88673 1.04405 0.89438 1.26113 0.95901 1.04075 0.95071 1.69683 1.36994 1.38976 1.10019 0.84826 0.78180 0.76675 0.78405 1.19298 1.19820 1.19734 1.22676 1.03065 0.96912 0.82900 1.23365 1.00439 0.79544 0.99497 1.88011 1.72168 1.27496 1.40439 0.89682 0.89116 0.89994 0.88858 0.87610 0.74901 0.89020 0.88715 0.76708 0.91111 0.88079 0.88397 0.90962 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 7.85 71.98 0.57 -2.37 16 2 C 0.06 1.14 0.59 -10.69 -0.01 1.13 16 3 C 0.48 8.78 2.38 71.98 0.17 8.96 16 4 F -0.18 -3.45 16.63 44.97 0.75 -2.70 16 5 F -0.17 -3.32 16.74 44.97 0.75 -2.57 16 6 F -0.17 -3.18 16.45 44.97 0.74 -2.44 16 7 C 0.11 2.20 5.03 86.35 0.43 2.64 16 8 N -0.62 -13.78 2.54 -835.35 -2.12 -15.90 16 9 C 0.71 21.08 8.31 179.06 1.49 22.57 16 10 O -0.62 -22.32 15.85 -3.98 -0.06 -22.39 16 11 N -0.72 -21.96 5.44 -482.31 -2.63 -24.59 16 12 C 0.14 4.81 6.16 85.63 0.53 5.34 16 13 C 0.43 19.00 7.85 87.65 0.69 19.69 16 14 O -0.62 -30.25 15.24 -3.07 -0.05 -30.29 16 15 N -0.56 -27.00 5.29 -306.98 -1.62 -28.62 16 16 C -0.33 -17.80 9.68 84.04 0.81 -16.99 16 17 H 0.09 4.90 7.16 -2.91 -0.02 4.88 16 18 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 19 N -0.92 -47.70 13.05 21.66 0.28 -47.42 16 20 Si 1.00 40.69 29.55 68.60 2.03 42.72 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 C 0.07 1.06 6.63 86.35 0.57 1.64 16 25 C 0.05 0.62 6.60 72.08 0.48 1.09 16 26 O -0.36 -6.17 10.12 -148.98 -1.51 -7.67 16 27 H 0.08 1.40 7.81 -2.39 -0.02 1.38 16 28 H 0.09 1.29 7.80 -2.39 -0.02 1.27 16 29 H 0.08 1.43 6.11 -2.39 -0.01 1.41 16 30 H 0.09 1.74 7.62 -2.38 -0.02 1.72 16 31 H 0.11 2.40 7.01 -2.39 -0.02 2.38 16 32 H 0.41 11.97 4.95 -92.71 -0.46 11.51 16 33 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.40 18.58 7.90 -92.72 -0.73 17.85 16 36 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 37 H 0.10 1.64 5.66 -2.39 -0.01 1.63 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 0.93 6.25 -2.39 -0.01 0.91 16 40 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -65.02 343.95 2.71 -62.32 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.05 Total: 35.96 kcal Atomic # 6 Polarization: 37.40 SS G_CDS: 6.20 Total: 43.60 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -6.09 Total: -116.53 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -1.62 Total: -60.35 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 2.24 Total: -7.71 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -65.02 2.71 -62.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875579224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.393 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds