Wall clock time and date at job start Tue Mar 31 2020 22:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51598 * 2 1 4 4 F 1.39901 * 109.46829 * 299.89602 * 3 2 1 5 5 F 1.39899 * 109.47157 * 59.89123 * 3 2 1 6 6 F 1.39898 * 109.47589 * 179.89479 * 3 2 1 7 7 C 1.53294 * 109.51528 * 239.89317 * 2 1 3 8 8 N 1.47153 * 108.38526 * 292.38209 * 7 2 1 9 9 C 1.34775 * 120.97854 * 129.44260 * 8 7 2 10 10 O 1.21581 * 120.00340 * 4.98451 * 9 8 7 11 11 N 1.34777 * 119.99579 * 184.98140 * 9 8 7 12 12 C 1.46499 * 119.99668 * 174.70503 * 11 9 8 13 13 C 1.50709 * 109.46857 * 180.27867 * 12 11 9 14 14 O 1.21294 * 119.99887 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99783 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00090 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99476 * 359.97438 * 16 15 13 18 18 C 1.38951 * 120.00333 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99918 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99874 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47337 * 59.99776 * 20 18 16 22 22 H 1.48499 * 109.46855 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46929 * 299.99421 * 20 18 16 24 24 C 1.47152 * 118.03265 * 309.71176 * 8 7 2 25 25 C 1.52880 * 108.60589 * 50.23115 * 24 8 7 26 26 O 1.42953 * 109.29594 * 307.92877 * 25 24 8 27 27 H 1.08996 * 109.47271 * 180.10423 * 1 2 3 28 28 H 1.08995 * 109.47433 * 300.10690 * 1 2 3 29 29 H 1.09003 * 109.46768 * 60.10277 * 1 2 3 30 30 H 1.09000 * 109.68229 * 172.65866 * 7 2 1 31 31 H 1.09001 * 109.67870 * 52.10752 * 7 2 1 32 32 H 0.97000 * 119.99875 * 354.97982 * 11 9 8 33 33 H 1.09004 * 109.47469 * 300.27377 * 12 11 9 34 34 H 1.08997 * 109.47313 * 60.28092 * 12 11 9 35 35 H 0.97002 * 120.00064 * 359.97438 * 15 13 12 36 36 H 0.96997 * 119.99914 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.67576 * 170.01019 * 24 8 7 38 38 H 1.08993 * 109.68316 * 290.56192 * 24 8 7 39 39 H 1.09005 * 109.57909 * 187.91520 * 25 24 8 40 40 H 1.09002 * 109.36886 * 67.81435 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 9 1.5772 2.1012 -1.1435 5 9 1.5733 2.1027 1.1410 6 9 3.4401 1.4411 0.0024 7 6 2.0421 -0.7248 -1.2499 8 7 1.6959 -2.1503 -1.1344 9 6 1.0708 -2.7961 -2.1387 10 8 0.8656 -2.2265 -3.1931 11 7 0.6733 -4.0733 -1.9743 12 6 -0.1076 -4.7379 -3.0206 13 6 -0.4279 -6.1463 -2.5904 14 8 -0.0414 -6.5548 -1.5157 15 7 -1.1428 -6.9521 -3.4003 16 6 -1.4338 -8.2335 -3.0092 17 1 -1.0897 -8.5972 -2.0522 18 6 -2.1705 -9.0645 -3.8443 19 7 -2.5887 -8.6220 -5.0089 20 14 -2.5674 -10.8102 -3.3110 21 1 -3.3554 -10.7763 -2.0528 22 1 -3.3584 -11.4840 -4.3719 23 1 -1.3045 -11.5578 -3.0843 24 6 2.0471 -2.8484 0.1126 25 6 1.5395 -2.0215 1.2940 26 8 2.0075 -0.6769 1.1653 27 1 -0.3633 -1.0276 0.0019 28 1 -0.3634 0.5155 0.8890 29 1 -0.3633 0.5123 -0.8909 30 1 3.1241 -0.6143 -1.3209 31 1 1.5705 -0.3033 -2.1377 32 1 0.9008 -4.5512 -1.1614 33 1 -1.0346 -4.1889 -3.1862 34 1 0.4700 -4.7627 -3.9446 35 1 -1.4516 -6.6255 -4.2599 36 1 -3.1032 -9.2020 -5.5917 37 1 1.5788 -3.8325 0.1266 38 1 3.1296 -2.9553 0.1811 39 1 1.9112 -2.4488 2.2254 40 1 0.4495 -2.0288 1.2987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875579225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:50 Heat of formation + Delta-G solvation = -243.474022 kcal Electronic energy + Delta-G solvation = -30516.983902 eV Core-core repulsion = 25531.826456 eV Total energy + Delta-G solvation = -4985.157446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.46016 -47.96674 -47.90802 -41.00405 -39.25184 -38.18058 -35.07154 -34.68668 -33.97357 -33.35905 -31.43973 -29.62741 -28.28090 -27.02861 -26.02955 -24.37763 -23.84745 -21.25476 -19.80930 -19.70207 -19.05626 -18.72279 -18.68636 -18.18623 -17.82817 -16.75889 -16.34010 -15.91556 -15.66343 -15.31086 -15.02166 -14.87120 -14.74813 -14.64144 -14.49645 -14.39324 -14.33916 -14.07880 -14.04506 -14.02647 -13.65135 -13.53992 -13.31855 -12.59664 -12.52019 -12.16843 -12.04191 -11.95261 -11.91962 -11.67870 -11.15109 -11.13738 -10.68904 -10.55180 -10.37057 -10.16944 -9.68365 -9.12014 -8.70706 -8.67605 -8.16188 -6.56750 -3.99164 2.00816 2.28147 2.93409 3.08572 3.11867 3.18156 3.21378 3.41540 3.54533 3.67818 3.75566 3.99238 4.06857 4.16209 4.29434 4.48920 4.67420 4.71674 4.82781 5.03056 5.09780 5.11787 5.14705 5.25281 5.31765 5.42676 5.65925 5.78897 5.90790 5.97267 6.05510 6.33420 6.58071 6.72963 7.40549 7.85931 7.92339 8.38311 8.54280 8.98683 9.32941 9.80297 10.59919 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030671 B = 0.002238 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.699069 B =12510.765982 C =12884.031347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.058 3.942 3 C 0.475 3.525 4 F -0.170 7.170 5 F -0.172 7.172 6 F -0.173 7.173 7 C 0.111 3.889 8 N -0.631 5.631 9 C 0.712 3.288 10 O -0.587 6.587 11 N -0.721 5.721 12 C 0.127 3.873 13 C 0.427 3.573 14 O -0.600 6.600 15 N -0.546 5.546 16 C -0.307 4.307 17 H 0.105 0.895 18 C 0.027 3.973 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.071 3.929 25 C 0.047 3.953 26 O -0.356 6.356 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.406 0.594 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.601 17.653 10.148 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.016 3.984 3 C 0.420 3.580 4 F -0.151 7.151 5 F -0.154 7.154 6 F -0.154 7.154 7 C -0.014 4.014 8 N -0.370 5.370 9 C 0.413 3.587 10 O -0.465 6.465 11 N -0.381 5.381 12 C -0.002 4.002 13 C 0.213 3.787 14 O -0.487 6.487 15 N -0.181 5.181 16 C -0.436 4.436 17 H 0.123 0.877 18 C -0.176 4.176 19 N -0.533 5.533 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.053 4.053 25 C -0.029 4.029 26 O -0.275 6.275 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.247 0.753 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.672 17.746 10.021 21.776 hybrid contribution -0.351 -0.867 -0.067 0.938 sum 7.321 16.879 9.954 20.918 Atomic orbital electron populations 1.22421 0.91395 1.05385 1.04712 1.22860 0.96950 0.88569 0.90054 1.19827 0.75818 0.88414 0.73935 1.93225 1.88585 1.82638 1.50698 1.93203 1.88287 1.82920 1.50947 1.93211 1.29230 1.96890 1.96086 1.21960 1.01608 0.80800 0.96989 1.47030 1.63611 1.09775 1.16552 1.15654 0.78224 0.81644 0.83158 1.90921 1.62358 1.67529 1.25657 1.44932 1.58028 1.11580 1.23516 1.20840 0.96185 0.92570 0.90566 1.19707 0.85174 0.86967 0.86882 1.90482 1.58304 1.76042 1.23880 1.41779 1.45842 1.12165 1.18307 1.19676 1.31984 0.87407 1.04548 0.87702 1.25334 0.96503 1.00617 0.95184 1.69602 1.36502 1.37863 1.09370 0.85866 0.78722 0.81146 0.78204 1.19758 1.20818 1.19742 1.22364 1.02180 0.96946 0.83788 1.23112 1.00154 0.80620 0.99055 1.88003 1.71978 1.26708 1.40773 0.89521 0.90149 0.89630 0.89634 0.86547 0.75349 0.89940 0.89765 0.76980 0.91456 0.88061 0.89819 0.86210 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 7.85 37.16 0.29 -1.32 16 2 C 0.06 0.56 0.59 -90.47 -0.05 0.51 16 3 C 0.48 4.69 2.38 37.16 0.09 4.77 16 4 F -0.17 -1.66 16.45 2.25 0.04 -1.63 16 5 F -0.17 -1.77 16.74 2.25 0.04 -1.73 16 6 F -0.17 -1.80 16.63 2.25 0.04 -1.77 16 7 C 0.11 1.18 5.03 -3.53 -0.02 1.17 16 8 N -0.63 -7.39 2.54 -178.26 -0.45 -7.84 16 9 C 0.71 10.86 8.31 -86.92 -0.72 10.14 16 10 O -0.59 -10.73 15.85 5.29 0.08 -10.65 16 11 N -0.72 -11.35 5.44 -66.41 -0.36 -11.71 16 12 C 0.13 2.23 6.16 -5.19 -0.03 2.19 16 13 C 0.43 9.36 7.85 -10.98 -0.09 9.27 16 14 O -0.60 -14.59 15.24 5.55 0.08 -14.51 16 15 N -0.55 -13.10 5.29 -10.96 -0.06 -13.15 16 16 C -0.31 -8.10 9.68 -14.93 -0.14 -8.24 16 17 H 0.11 2.87 7.16 -52.49 -0.38 2.50 16 18 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 19 N -0.89 -23.35 13.05 55.50 0.72 -22.63 16 20 Si 0.93 20.05 29.55 -169.99 -5.02 15.03 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C 0.07 0.63 6.60 -3.75 -0.02 0.61 16 25 C 0.05 0.36 6.58 37.10 0.24 0.61 16 26 O -0.36 -3.42 10.12 -35.23 -0.36 -3.78 16 27 H 0.09 0.82 6.11 -51.93 -0.32 0.50 16 28 H 0.08 0.64 7.80 -51.93 -0.41 0.23 16 29 H 0.08 0.74 7.81 -51.93 -0.41 0.34 16 30 H 0.09 0.85 7.62 -51.93 -0.40 0.46 16 31 H 0.12 1.35 7.01 -51.93 -0.36 0.98 16 32 H 0.41 6.14 4.95 -40.82 -0.20 5.94 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.40 9.15 7.90 -40.82 -0.32 8.83 16 36 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.10 0.91 5.66 -51.93 -0.29 0.62 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.53 6.25 -51.93 -0.32 0.20 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -30.85 343.91 -4.85 -35.70 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -4.23 Total: 13.18 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: -0.55 Total: 20.30 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.15 Total: -55.33 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.19 Total: -28.93 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.85 -4.85 -35.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875579225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.773 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds