Wall clock time and date at job start Tue Mar 31 2020 22:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51598 * 2 1 4 4 F 1.39901 * 109.46829 * 299.89602 * 3 2 1 5 5 F 1.39899 * 109.47157 * 59.89123 * 3 2 1 6 6 F 1.39898 * 109.47589 * 179.89479 * 3 2 1 7 7 C 1.53294 * 109.51528 * 239.89317 * 2 1 3 8 8 N 1.47153 * 108.38526 * 292.38209 * 7 2 1 9 9 C 1.34775 * 120.97854 * 129.44260 * 8 7 2 10 10 O 1.21581 * 120.00340 * 4.98451 * 9 8 7 11 11 N 1.34777 * 119.99579 * 184.98140 * 9 8 7 12 12 C 1.46499 * 119.99668 * 174.70503 * 11 9 8 13 13 C 1.50709 * 109.46857 * 180.27867 * 12 11 9 14 14 O 1.21294 * 119.99887 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99783 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00090 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99476 * 359.97438 * 16 15 13 18 18 C 1.38951 * 120.00333 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99918 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99874 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47337 * 59.99776 * 20 18 16 22 22 H 1.48499 * 109.46855 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46929 * 299.99421 * 20 18 16 24 24 C 1.47152 * 118.03265 * 309.71176 * 8 7 2 25 25 C 1.52880 * 108.60589 * 50.23115 * 24 8 7 26 26 O 1.42953 * 109.29594 * 307.92877 * 25 24 8 27 27 H 1.08996 * 109.47271 * 180.10423 * 1 2 3 28 28 H 1.08995 * 109.47433 * 300.10690 * 1 2 3 29 29 H 1.09003 * 109.46768 * 60.10277 * 1 2 3 30 30 H 1.09000 * 109.68229 * 172.65866 * 7 2 1 31 31 H 1.09001 * 109.67870 * 52.10752 * 7 2 1 32 32 H 0.97000 * 119.99875 * 354.97982 * 11 9 8 33 33 H 1.09004 * 109.47469 * 300.27377 * 12 11 9 34 34 H 1.08997 * 109.47313 * 60.28092 * 12 11 9 35 35 H 0.97002 * 120.00064 * 359.97438 * 15 13 12 36 36 H 0.96997 * 119.99914 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.67576 * 170.01019 * 24 8 7 38 38 H 1.08993 * 109.68316 * 290.56192 * 24 8 7 39 39 H 1.09005 * 109.57909 * 187.91520 * 25 24 8 40 40 H 1.09002 * 109.36886 * 67.81435 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 9 1.5772 2.1012 -1.1435 5 9 1.5733 2.1027 1.1410 6 9 3.4401 1.4411 0.0024 7 6 2.0421 -0.7248 -1.2499 8 7 1.6959 -2.1503 -1.1344 9 6 1.0708 -2.7961 -2.1387 10 8 0.8656 -2.2265 -3.1931 11 7 0.6733 -4.0733 -1.9743 12 6 -0.1076 -4.7379 -3.0206 13 6 -0.4279 -6.1463 -2.5904 14 8 -0.0414 -6.5548 -1.5157 15 7 -1.1428 -6.9521 -3.4003 16 6 -1.4338 -8.2335 -3.0092 17 1 -1.0897 -8.5972 -2.0522 18 6 -2.1705 -9.0645 -3.8443 19 7 -2.5887 -8.6220 -5.0089 20 14 -2.5674 -10.8102 -3.3110 21 1 -3.3554 -10.7763 -2.0528 22 1 -3.3584 -11.4840 -4.3719 23 1 -1.3045 -11.5578 -3.0843 24 6 2.0471 -2.8484 0.1126 25 6 1.5395 -2.0215 1.2940 26 8 2.0075 -0.6769 1.1653 27 1 -0.3633 -1.0276 0.0019 28 1 -0.3634 0.5155 0.8890 29 1 -0.3633 0.5123 -0.8909 30 1 3.1241 -0.6143 -1.3209 31 1 1.5705 -0.3033 -2.1377 32 1 0.9008 -4.5512 -1.1614 33 1 -1.0346 -4.1889 -3.1862 34 1 0.4700 -4.7627 -3.9446 35 1 -1.4516 -6.6255 -4.2599 36 1 -3.1032 -9.2020 -5.5917 37 1 1.5788 -3.8325 0.1266 38 1 3.1296 -2.9553 0.1811 39 1 1.9112 -2.4488 2.2254 40 1 0.4495 -2.0288 1.2987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875579225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:49 Heat of formation + Delta-G solvation = -265.533681 kcal Electronic energy + Delta-G solvation = -30517.940481 eV Core-core repulsion = 25531.826456 eV Total energy + Delta-G solvation = -4986.114025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.25369 -48.75664 -48.71161 -41.98181 -40.50929 -39.72577 -36.29850 -36.06643 -35.44628 -34.28499 -33.35779 -30.40266 -29.63352 -27.88633 -27.22330 -26.00336 -24.63485 -22.23088 -21.42283 -20.71047 -20.22064 -19.85886 -19.55287 -19.49098 -18.84569 -17.72385 -17.53305 -17.21212 -16.94432 -16.56023 -16.15189 -16.02941 -15.90483 -15.76148 -15.59810 -15.42210 -15.17701 -15.14189 -15.06108 -14.87363 -14.84002 -14.74003 -14.11061 -13.99940 -13.61057 -13.52895 -13.26376 -13.16743 -12.89143 -12.71413 -12.67262 -12.45918 -12.13690 -11.96770 -11.55105 -11.47574 -11.35857 -10.55178 -10.36196 -10.09021 -9.68280 -8.50198 -6.00305 1.13521 1.34511 1.38818 1.44389 1.54854 1.87740 1.96154 2.17516 2.27544 2.57166 2.73460 2.74058 3.13037 3.17399 3.22175 3.36524 3.54039 3.77437 3.94863 4.07174 4.19713 4.26297 4.36037 4.40497 4.43962 4.45851 4.48866 4.68224 4.74664 4.96892 5.13243 5.23553 5.39212 5.63680 5.64311 5.92595 6.48224 6.74727 7.04164 7.32209 7.45942 7.94658 8.66417 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030671 B = 0.002238 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.699069 B =12510.765982 C =12884.031347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.064 3.936 3 C 0.477 3.523 4 F -0.171 7.171 5 F -0.174 7.174 6 F -0.176 7.176 7 C 0.109 3.891 8 N -0.624 5.624 9 C 0.713 3.287 10 O -0.619 6.619 11 N -0.721 5.721 12 C 0.140 3.860 13 C 0.434 3.566 14 O -0.623 6.623 15 N -0.559 5.559 16 C -0.336 4.336 17 H 0.088 0.912 18 C -0.010 4.010 19 N -0.917 5.917 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.270 1.270 24 C 0.067 3.933 25 C 0.048 3.952 26 O -0.362 6.362 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.410 0.590 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.399 0.601 36 H 0.280 0.720 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.839 17.731 11.173 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.021 3.979 3 C 0.422 3.578 4 F -0.152 7.152 5 F -0.155 7.155 6 F -0.158 7.158 7 C -0.015 4.015 8 N -0.361 5.361 9 C 0.414 3.586 10 O -0.500 6.500 11 N -0.380 5.380 12 C 0.011 3.989 13 C 0.221 3.779 14 O -0.511 6.511 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.106 0.894 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.819 3.181 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.195 1.195 24 C -0.056 4.056 25 C -0.029 4.029 26 O -0.281 6.281 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.251 0.749 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.166 0.834 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.931 17.851 11.080 22.457 hybrid contribution -0.358 -0.815 -0.331 0.949 sum 7.573 17.036 10.749 21.520 Atomic orbital electron populations 1.22412 0.90848 1.05200 1.05237 1.22755 0.97263 0.88237 0.89605 1.19843 0.75631 0.88529 0.73838 1.93226 1.88560 1.82692 1.50718 1.93199 1.88290 1.82967 1.51043 1.93203 1.29546 1.96911 1.96098 1.22029 1.02040 0.80166 0.97278 1.47021 1.62376 1.10166 1.16584 1.15689 0.78240 0.81240 0.83412 1.90900 1.63755 1.68098 1.27251 1.44825 1.58102 1.11902 1.23199 1.20632 0.97201 0.89853 0.91164 1.20360 0.83384 0.88135 0.85981 1.90461 1.58728 1.77050 1.24864 1.41829 1.46794 1.11986 1.18792 1.19700 1.33458 0.88894 1.04506 0.89408 1.26115 0.95877 1.04056 0.95059 1.69672 1.36805 1.39143 1.10023 0.84944 0.78529 0.76604 0.78033 1.19408 1.19829 1.19490 1.22593 1.03153 0.96939 0.82893 1.23292 1.00455 0.79586 0.99523 1.88010 1.72170 1.27503 1.40424 0.90002 0.89109 0.89686 0.88845 0.87612 0.74900 0.88726 0.89027 0.76707 0.91091 0.88068 0.88415 0.83383 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 7.85 71.98 0.57 -2.38 16 2 C 0.06 1.14 0.59 -10.70 -0.01 1.13 16 3 C 0.48 8.79 2.38 71.98 0.17 8.96 16 4 F -0.17 -3.18 16.45 44.97 0.74 -2.44 16 5 F -0.17 -3.32 16.74 44.97 0.75 -2.57 16 6 F -0.18 -3.45 16.63 44.97 0.75 -2.70 16 7 C 0.11 2.20 5.03 86.35 0.43 2.64 16 8 N -0.62 -13.79 2.54 -836.17 -2.13 -15.92 16 9 C 0.71 21.10 8.31 179.05 1.49 22.59 16 10 O -0.62 -22.33 15.85 -3.97 -0.06 -22.40 16 11 N -0.72 -21.98 5.44 -482.29 -2.63 -24.61 16 12 C 0.14 4.82 6.16 85.64 0.53 5.35 16 13 C 0.43 18.99 7.85 87.66 0.69 19.67 16 14 O -0.62 -30.24 15.24 -3.07 -0.05 -30.29 16 15 N -0.56 -26.99 5.29 -306.97 -1.62 -28.61 16 16 C -0.34 -17.92 9.68 84.04 0.81 -17.11 16 17 H 0.09 4.89 7.16 -2.91 -0.02 4.87 16 18 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 19 N -0.92 -47.73 13.05 21.66 0.28 -47.45 16 20 Si 1.00 40.66 29.55 68.60 2.03 42.68 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 C 0.07 1.06 6.60 86.21 0.57 1.63 16 25 C 0.05 0.61 6.58 71.94 0.47 1.09 16 26 O -0.36 -6.17 10.12 -148.98 -1.51 -7.67 16 27 H 0.08 1.43 6.11 -2.39 -0.01 1.41 16 28 H 0.09 1.29 7.80 -2.39 -0.02 1.27 16 29 H 0.08 1.40 7.81 -2.39 -0.02 1.38 16 30 H 0.09 1.75 7.62 -2.39 -0.02 1.73 16 31 H 0.11 2.40 7.01 -2.39 -0.02 2.39 16 32 H 0.41 11.97 4.95 -92.71 -0.46 11.51 16 33 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 34 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 36 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 37 H 0.10 1.65 5.66 -2.39 -0.01 1.63 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.15 1.10 8.14 -2.38 -0.02 1.09 16 40 H 0.07 0.93 6.25 -2.39 -0.01 0.91 16 Total: -1.00 -64.93 343.91 2.70 -62.23 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.05 Total: 36.22 kcal Atomic # 6 Polarization: 37.32 SS G_CDS: 6.19 Total: 43.51 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -6.09 Total: -116.58 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -1.62 Total: -60.36 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 2.24 Total: -7.71 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Total: -64.93 2.70 -62.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875579225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.301 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds