Wall clock time and date at job start Tue Mar 31 2020 22:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00273 * 2 1 4 4 O 1.20825 * 120.00191 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99886 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.87060 * 58.98756 * 5 3 2 7 7 C 1.54320 * 110.01311 * 297.88697 * 5 3 2 8 8 C 1.55162 * 102.94291 * 218.31694 * 7 5 3 9 9 F 1.39893 * 111.00447 * 153.57757 * 8 7 5 10 10 F 1.39904 * 111.00203 * 277.42821 * 8 7 5 11 11 C 1.54693 * 101.67575 * 35.33666 * 8 7 5 12 12 N 1.47028 * 109.88166 * 180.02562 * 5 3 2 13 13 C 1.34778 * 125.64555 * 298.47904 * 12 5 3 14 14 O 1.21584 * 120.00141 * 3.27197 * 13 12 5 15 15 C 1.47643 * 119.99652 * 183.26875 * 13 12 5 16 16 C 1.40018 * 119.89670 * 334.22220 * 15 13 12 17 17 C 1.36319 * 120.10844 * 179.72286 * 16 15 13 18 18 C 1.40887 * 119.88908 * 0.25543 * 17 16 15 19 19 C 1.41106 * 120.09978 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99980 * 210.57905 * 19 18 17 21 21 C 1.40226 * 120.00073 * 30.58195 * 19 18 17 22 22 N 1.30649 * 120.00116 * 16.09448 * 21 19 18 23 23 Si 1.86801 * 120.00240 * 196.08766 * 21 19 18 24 24 H 1.48502 * 109.46904 * 89.99963 * 23 21 19 25 25 H 1.48496 * 109.47211 * 210.00073 * 23 21 19 26 26 H 1.48499 * 109.46996 * 330.00448 * 23 21 19 27 27 C 1.40888 * 119.79676 * 0.02562 * 18 17 16 28 28 C 1.36321 * 119.88951 * 359.97438 * 27 18 17 29 29 H 1.08991 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47205 * 300.00152 * 1 2 3 31 31 H 1.09003 * 109.47111 * 59.99618 * 1 2 3 32 32 H 1.08990 * 110.72180 * 336.68207 * 7 5 3 33 33 H 1.09004 * 110.71830 * 99.77689 * 7 5 3 34 34 H 1.09004 * 110.39068 * 204.36752 * 11 8 7 35 35 H 1.08998 * 110.23225 * 82.11038 * 11 8 7 36 36 H 1.08004 * 119.94519 * 0.02562 * 16 15 13 37 37 H 1.08000 * 120.04866 * 180.23436 * 17 16 15 38 38 H 0.97000 * 120.00054 * 179.97438 * 22 21 19 39 39 H 1.07996 * 120.05437 * 180.02562 * 27 18 17 40 40 H 1.07998 * 119.94448 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9644 0.7664 -0.8777 7 6 4.1288 0.6253 1.2826 8 6 5.3154 1.5545 1.6511 9 9 5.5744 1.5161 3.0253 10 9 6.4594 1.2217 0.9178 11 6 4.7728 2.9391 1.2251 12 7 3.9935 2.6816 0.0011 13 6 3.7222 3.5851 -0.9615 14 8 3.0219 3.2755 -1.9059 15 6 4.2755 4.9508 -0.8691 16 6 4.5993 5.4894 0.3822 17 6 5.1157 6.7478 0.4721 18 6 5.3185 7.5086 -0.6962 19 6 5.8522 8.8118 -0.6083 20 1 5.5741 9.5596 -1.3363 21 6 6.7438 9.1362 0.4244 22 7 7.3245 8.1865 1.1084 23 14 7.1014 10.9260 0.8219 24 1 6.1350 11.4094 1.8406 25 1 8.4829 11.0487 1.3526 26 1 6.9705 11.7427 -0.4114 27 6 4.9857 6.9646 -1.9525 28 6 4.4698 5.7053 -2.0324 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.3799 0.6236 2.0744 33 1 4.4769 -0.3878 1.0809 34 1 5.5964 3.6213 1.0141 35 1 4.1302 3.3483 2.0047 36 1 4.4442 4.9051 1.2771 37 1 5.3686 7.1609 1.4374 38 1 7.9415 8.4108 1.8224 39 1 5.1397 7.5440 -2.8508 40 1 4.2147 5.2873 -2.9950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881729815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:16 Heat of formation + Delta-G solvation = -178.543012 kcal Electronic energy + Delta-G solvation = -29898.058786 eV Core-core repulsion = 25314.193434 eV Total energy + Delta-G solvation = -4583.865353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.02998 -47.20987 -40.89538 -39.37599 -37.50674 -36.62329 -36.28967 -33.90553 -31.96437 -30.03022 -29.74111 -29.47631 -27.64172 -26.13733 -24.51382 -22.36045 -22.13755 -21.05931 -20.70308 -19.36026 -18.30174 -17.59361 -17.34438 -17.25143 -16.78196 -16.53211 -16.30602 -15.71262 -15.44586 -15.26414 -14.56566 -14.21907 -14.15141 -13.74342 -13.56333 -13.48283 -13.43045 -13.16645 -13.09151 -12.86382 -12.58811 -12.52965 -12.29710 -12.03548 -12.00252 -11.95733 -11.43582 -11.32314 -10.99408 -10.91762 -10.86851 -10.67756 -10.51777 -10.06434 -9.53557 -9.40787 -9.19861 -8.72497 -7.77006 -7.56663 -7.03948 -4.63681 2.09483 2.15590 2.43538 2.88799 2.91973 2.94587 2.96450 2.98633 3.45597 3.49028 3.69269 3.75788 3.83690 4.19809 4.48832 4.65746 4.67682 4.88036 4.98095 5.06381 5.15799 5.30208 5.37417 5.40399 5.48185 5.53951 5.61581 5.97143 6.19568 6.22307 6.30945 6.71799 6.81502 6.93784 7.04142 7.38389 7.45765 7.65359 7.73176 7.81231 7.85846 8.03042 8.35584 8.59742 8.69450 8.77208 9.90758 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.003361 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.392947 B = 8328.781159 C = 9439.371219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.449 3.551 4 O -0.470 6.470 5 C 0.152 3.848 6 H 0.121 0.879 7 C -0.153 4.153 8 C 0.273 3.727 9 F -0.181 7.181 10 F -0.179 7.179 11 C 0.069 3.931 12 N -0.607 5.607 13 C 0.602 3.398 14 O -0.546 6.546 15 C -0.274 4.274 16 C -0.079 4.079 17 C -0.169 4.169 18 C 0.133 3.867 19 C -0.448 4.448 20 H 0.085 0.915 21 C 0.076 3.924 22 N -0.776 5.776 23 Si 0.913 3.087 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.260 1.260 27 C -0.231 4.231 28 C -0.023 4.023 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.287 0.713 39 H 0.100 0.900 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.201 -13.823 4.662 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.288 3.712 4 O -0.353 6.353 5 C 0.046 3.954 6 H 0.139 0.861 7 C -0.192 4.192 8 C 0.235 3.765 9 F -0.162 7.162 10 F -0.160 7.160 11 C -0.055 4.055 12 N -0.345 5.345 13 C 0.400 3.600 14 O -0.424 6.424 15 C -0.278 4.278 16 C -0.098 4.098 17 C -0.189 4.189 18 C 0.130 3.870 19 C -0.476 4.476 20 H 0.103 0.897 21 C -0.145 4.145 22 N -0.400 5.400 23 Si 0.737 3.263 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.251 4.251 28 C -0.042 4.042 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.631 -13.637 4.262 15.019 hybrid contribution 0.174 0.702 0.409 0.831 sum -4.458 -12.934 4.671 14.456 Atomic orbital electron populations 1.23243 0.76317 1.03442 1.02708 1.86466 1.23447 1.33329 1.84677 1.23891 0.91892 0.81820 0.73617 1.90739 1.66168 1.36110 1.42311 1.20936 0.87786 0.85953 1.00750 0.86099 1.23582 0.97169 1.00793 0.97608 1.21850 0.83166 0.97562 0.73894 1.93038 1.95011 1.97249 1.30892 1.93070 1.52802 1.93533 1.76556 1.23554 0.98470 0.94378 0.89110 1.48152 1.55066 1.08698 1.22548 1.18435 0.78252 0.84225 0.79064 1.90678 1.38485 1.80124 1.33102 1.18679 1.20419 0.93577 0.95170 1.20932 0.97591 0.96286 0.95004 1.20878 1.04398 0.94814 0.98762 1.17789 0.86237 0.92295 0.90723 1.19812 1.21567 0.96697 1.09565 0.89680 1.26044 0.94270 0.99963 0.94253 1.69715 1.19275 1.34888 1.16080 0.86215 0.78362 0.81753 0.79971 1.18980 1.20036 1.18344 1.20764 1.11347 0.95964 0.96981 1.20299 0.94481 0.93719 0.95719 0.88135 0.91997 0.91806 0.86935 0.86106 0.85550 0.88032 0.88033 0.86671 0.90231 0.88153 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.39 10.54 -39.24 -0.41 -4.81 16 3 C 0.45 6.77 6.75 36.01 0.24 7.02 16 4 O -0.47 -9.00 14.70 -24.50 -0.36 -9.36 16 5 C 0.15 2.07 3.39 -68.10 -0.23 1.84 16 6 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 7 C -0.15 -1.50 6.08 -24.90 -0.15 -1.65 16 8 C 0.27 3.30 2.63 -24.70 -0.07 3.23 16 9 F -0.18 -2.19 17.24 2.25 0.04 -2.15 16 10 F -0.18 -2.42 17.23 2.25 0.04 -2.38 16 11 C 0.07 1.00 4.60 -2.67 -0.01 0.98 16 12 N -0.61 -10.33 2.84 -165.67 -0.47 -10.80 16 13 C 0.60 12.89 6.88 -12.42 -0.09 12.81 16 14 O -0.55 -13.03 15.70 -10.98 -0.17 -13.20 16 15 C -0.27 -6.21 5.74 -104.73 -0.60 -6.81 16 16 C -0.08 -1.73 7.87 -39.61 -0.31 -2.04 16 17 C -0.17 -4.06 8.60 -39.27 -0.34 -4.40 16 18 C 0.13 3.33 5.50 -106.80 -0.59 2.74 16 19 C -0.45 -11.04 9.02 -37.75 -0.34 -11.38 16 20 H 0.09 2.01 7.90 -52.48 -0.41 1.60 16 21 C 0.08 1.75 5.13 -17.31 -0.09 1.66 16 22 N -0.78 -18.38 11.26 55.56 0.63 -17.75 16 23 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.28 -5.10 7.11 56.52 0.40 -4.69 16 26 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 27 C -0.23 -5.50 9.73 -39.27 -0.38 -5.89 16 28 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.11 0.95 7.85 -51.93 -0.41 0.54 16 33 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.13 2.01 6.13 -51.93 -0.32 1.69 16 35 H 0.10 1.34 7.26 -51.93 -0.38 0.96 16 36 H 0.10 1.90 4.40 -52.48 -0.23 1.67 16 37 H 0.12 2.79 6.55 -52.49 -0.34 2.45 16 38 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.21 7.84 -52.49 -0.41 1.80 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -30.75 347.39 -6.94 -37.69 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.17 Total: 6.68 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.26 Total: -1.38 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: 0.16 Total: -28.55 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.95 Total: -27.36 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.08 Total: -4.54 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.75 -6.94 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881729815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.849 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds