Wall clock time and date at job start Tue Mar 31 2020 22:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00273 * 2 1 4 4 O 1.20825 * 120.00191 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99886 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.87060 * 58.98756 * 5 3 2 7 7 C 1.54320 * 110.01311 * 297.88697 * 5 3 2 8 8 C 1.55162 * 102.94291 * 218.31694 * 7 5 3 9 9 F 1.39893 * 111.00447 * 153.57757 * 8 7 5 10 10 F 1.39904 * 111.00203 * 277.42821 * 8 7 5 11 11 C 1.54693 * 101.67575 * 35.33666 * 8 7 5 12 12 N 1.47028 * 109.88166 * 180.02562 * 5 3 2 13 13 C 1.34778 * 125.64555 * 298.47904 * 12 5 3 14 14 O 1.21584 * 120.00141 * 3.27197 * 13 12 5 15 15 C 1.47643 * 119.99652 * 183.26875 * 13 12 5 16 16 C 1.40018 * 119.89670 * 334.22220 * 15 13 12 17 17 C 1.36319 * 120.10844 * 179.72286 * 16 15 13 18 18 C 1.40887 * 119.88908 * 0.25543 * 17 16 15 19 19 C 1.41106 * 120.09978 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99980 * 210.57905 * 19 18 17 21 21 C 1.40226 * 120.00073 * 30.58195 * 19 18 17 22 22 N 1.30649 * 120.00116 * 16.09448 * 21 19 18 23 23 Si 1.86801 * 120.00240 * 196.08766 * 21 19 18 24 24 H 1.48502 * 109.46904 * 89.99963 * 23 21 19 25 25 H 1.48496 * 109.47211 * 210.00073 * 23 21 19 26 26 H 1.48499 * 109.46996 * 330.00448 * 23 21 19 27 27 C 1.40888 * 119.79676 * 0.02562 * 18 17 16 28 28 C 1.36321 * 119.88951 * 359.97438 * 27 18 17 29 29 H 1.08991 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47205 * 300.00152 * 1 2 3 31 31 H 1.09003 * 109.47111 * 59.99618 * 1 2 3 32 32 H 1.08990 * 110.72180 * 336.68207 * 7 5 3 33 33 H 1.09004 * 110.71830 * 99.77689 * 7 5 3 34 34 H 1.09004 * 110.39068 * 204.36752 * 11 8 7 35 35 H 1.08998 * 110.23225 * 82.11038 * 11 8 7 36 36 H 1.08004 * 119.94519 * 0.02562 * 16 15 13 37 37 H 1.08000 * 120.04866 * 180.23436 * 17 16 15 38 38 H 0.97000 * 120.00054 * 179.97438 * 22 21 19 39 39 H 1.07996 * 120.05437 * 180.02562 * 27 18 17 40 40 H 1.07998 * 119.94448 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9644 0.7664 -0.8777 7 6 4.1288 0.6253 1.2826 8 6 5.3154 1.5545 1.6511 9 9 5.5744 1.5161 3.0253 10 9 6.4594 1.2217 0.9178 11 6 4.7728 2.9391 1.2251 12 7 3.9935 2.6816 0.0011 13 6 3.7222 3.5851 -0.9615 14 8 3.0219 3.2755 -1.9059 15 6 4.2755 4.9508 -0.8691 16 6 4.5993 5.4894 0.3822 17 6 5.1157 6.7478 0.4721 18 6 5.3185 7.5086 -0.6962 19 6 5.8522 8.8118 -0.6083 20 1 5.5741 9.5596 -1.3363 21 6 6.7438 9.1362 0.4244 22 7 7.3245 8.1865 1.1084 23 14 7.1014 10.9260 0.8219 24 1 6.1350 11.4094 1.8406 25 1 8.4829 11.0487 1.3526 26 1 6.9705 11.7427 -0.4114 27 6 4.9857 6.9646 -1.9525 28 6 4.4698 5.7053 -2.0324 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.3799 0.6236 2.0744 33 1 4.4769 -0.3878 1.0809 34 1 5.5964 3.6213 1.0141 35 1 4.1302 3.3483 2.0047 36 1 4.4442 4.9051 1.2771 37 1 5.3686 7.1609 1.4374 38 1 7.9415 8.4108 1.8224 39 1 5.1397 7.5440 -2.8508 40 1 4.2147 5.2873 -2.9950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881729815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:16 Heat of formation + Delta-G solvation = -194.991084 kcal Electronic energy + Delta-G solvation = -29898.772028 eV Core-core repulsion = 25314.193434 eV Total energy + Delta-G solvation = -4584.578595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.02907 -48.21096 -42.11940 -40.79166 -39.12206 -38.13835 -37.45308 -35.67654 -33.33137 -31.56403 -31.44474 -30.82531 -28.52532 -27.83991 -25.77919 -23.78775 -23.38976 -22.69888 -22.10155 -20.76622 -19.38869 -19.36454 -18.57499 -18.44730 -18.01214 -17.75611 -17.38279 -17.11482 -16.84351 -16.61362 -15.96475 -15.81589 -15.17352 -15.01368 -14.92695 -14.85332 -14.52873 -14.47668 -14.35256 -14.20517 -13.99432 -13.85267 -13.69072 -13.44726 -13.35543 -13.04525 -12.88330 -12.85243 -12.64565 -12.39916 -12.00821 -11.85477 -11.77141 -11.72031 -11.29993 -11.13797 -10.89947 -10.10761 -9.60032 -9.41478 -8.78339 -6.50053 0.38381 1.01035 1.08737 1.26126 1.39820 1.43831 1.53117 1.67193 2.05177 2.17842 2.39573 2.52966 2.70467 2.81583 3.28056 3.60852 3.63030 3.71268 3.83284 4.01140 4.23457 4.26820 4.28855 4.29671 4.35339 4.37216 4.49018 4.60636 4.67293 4.86574 4.92385 5.03244 5.11442 5.23340 5.24024 5.56698 5.70706 5.85704 5.96506 6.18177 6.22548 6.51376 6.60528 6.76081 6.84978 7.13718 8.19280 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.003361 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.392947 B = 8328.781159 C = 9439.371219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.453 3.547 4 O -0.518 6.518 5 C 0.143 3.857 6 H 0.134 0.866 7 C -0.134 4.134 8 C 0.282 3.718 9 F -0.177 7.177 10 F -0.187 7.187 11 C 0.058 3.942 12 N -0.607 5.607 13 C 0.602 3.398 14 O -0.578 6.578 15 C -0.285 4.285 16 C -0.069 4.069 17 C -0.187 4.187 18 C 0.107 3.893 19 C -0.480 4.480 20 H 0.084 0.916 21 C 0.040 3.960 22 N -0.802 5.802 23 Si 0.985 3.015 24 H -0.260 1.260 25 H -0.265 1.265 26 H -0.259 1.259 27 C -0.245 4.245 28 C -0.033 4.033 29 H 0.142 0.858 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.296 0.704 39 H 0.107 0.893 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 -15.527 6.287 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.294 3.706 4 O -0.405 6.405 5 C 0.037 3.963 6 H 0.151 0.849 7 C -0.171 4.171 8 C 0.245 3.755 9 F -0.158 7.158 10 F -0.168 7.168 11 C -0.065 4.065 12 N -0.342 5.342 13 C 0.399 3.601 14 O -0.459 6.459 15 C -0.289 4.289 16 C -0.088 4.088 17 C -0.207 4.207 18 C 0.104 3.896 19 C -0.508 4.508 20 H 0.102 0.898 21 C -0.179 4.179 22 N -0.426 5.426 23 Si 0.806 3.194 24 H -0.185 1.185 25 H -0.189 1.189 26 H -0.182 1.182 27 C -0.264 4.264 28 C -0.052 4.052 29 H 0.160 0.840 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.522 -15.406 5.918 17.112 hybrid contribution 0.098 1.077 -0.092 1.085 sum -4.424 -14.330 5.825 16.089 Atomic orbital electron populations 1.23564 0.74676 1.05966 1.02147 1.86462 1.24943 1.31462 1.83826 1.24094 0.92325 0.81882 0.72257 1.90731 1.67221 1.37779 1.44813 1.21314 0.87388 0.84021 1.03538 0.84883 1.23667 0.96057 1.01482 0.95928 1.21663 0.83498 0.96501 0.73846 1.93054 1.95032 1.97151 1.30535 1.93064 1.53473 1.93427 1.76819 1.23654 0.98069 0.96314 0.88484 1.47899 1.54434 1.09755 1.22084 1.18129 0.77942 0.84408 0.79639 1.90649 1.39872 1.80745 1.34626 1.18996 1.19900 0.94811 0.95237 1.21181 0.95986 0.95663 0.95943 1.20892 1.05781 0.95779 0.98201 1.18125 0.86965 0.93123 0.91422 1.20053 1.22877 0.96802 1.11031 0.89761 1.26839 0.93390 1.04203 0.93434 1.69738 1.19507 1.36919 1.16405 0.85138 0.78543 0.76119 0.79634 1.18468 1.18934 1.18250 1.20904 1.11955 0.96431 0.97119 1.20460 0.94592 0.93753 0.96438 0.84013 0.91817 0.93233 0.84889 0.82276 0.87330 0.86536 0.85101 0.87340 0.89246 0.87520 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.35 -7.59 10.54 -51.36 -0.54 -8.13 16 3 C 0.45 12.93 6.75 71.24 0.48 13.41 16 4 O -0.52 -19.68 14.70 27.47 0.40 -19.27 16 5 C 0.14 3.57 3.39 44.59 0.15 3.72 16 6 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 7 C -0.13 -2.09 6.08 31.78 0.19 -1.90 16 8 C 0.28 6.05 2.63 31.91 0.08 6.13 16 9 F -0.18 -3.74 17.24 44.97 0.78 -2.97 16 10 F -0.19 -4.64 17.23 44.97 0.77 -3.86 16 11 C 0.06 1.60 4.60 86.79 0.40 2.00 16 12 N -0.61 -20.08 2.84 -796.32 -2.26 -22.34 16 13 C 0.60 26.01 6.88 86.73 0.60 26.60 16 14 O -0.58 -28.05 15.70 11.58 0.18 -27.87 16 15 C -0.29 -13.21 5.74 -19.93 -0.11 -13.33 16 16 C -0.07 -3.07 7.87 22.25 0.18 -2.90 16 17 C -0.19 -9.23 8.60 22.47 0.19 -9.04 16 18 C 0.11 5.54 5.50 -21.28 -0.12 5.42 16 19 C -0.48 -24.29 9.02 23.46 0.21 -24.08 16 20 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 21 C 0.04 1.86 5.13 85.35 0.44 2.30 16 22 N -0.80 -38.29 11.26 21.87 0.25 -38.05 16 23 Si 0.99 35.12 29.59 68.60 2.03 37.15 16 24 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 25 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 26 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 27 C -0.24 -12.13 9.73 22.47 0.22 -11.92 16 28 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 29 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 31 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 32 H 0.13 1.63 7.85 -2.39 -0.02 1.61 16 33 H 0.16 1.38 8.14 -2.38 -0.02 1.37 16 34 H 0.11 3.41 6.13 -2.39 -0.01 3.39 16 35 H 0.12 2.86 7.26 -2.39 -0.02 2.84 16 36 H 0.13 4.87 4.40 -2.91 -0.01 4.86 16 37 H 0.11 5.41 6.55 -2.91 -0.02 5.39 16 38 H 0.30 12.61 8.29 -92.71 -0.77 11.84 16 39 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.10 4.79 7.84 -2.91 -0.02 4.77 16 Total: -1.00 -69.24 347.39 7.03 -62.21 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 1.10 Total: 26.40 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 4.32 Total: -3.26 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -2.02 Total: -60.39 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: 0.04 Total: -55.27 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 1.55 Total: -6.83 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Total: -69.24 7.03 -62.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881729815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.783 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds