Wall clock time and date at job start Tue Mar 31 2020 22:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34222 * 117.00021 * 2 1 4 4 O 1.20834 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00331 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.99516 * 58.90243 * 5 3 2 7 7 C 1.54332 * 109.99008 * 297.87151 * 5 3 2 8 8 C 1.55162 * 103.02036 * 218.66257 * 7 5 3 9 9 F 1.39900 * 111.00106 * 277.23310 * 8 7 5 10 10 F 1.39896 * 111.00351 * 153.37611 * 8 7 5 11 11 C 1.54909 * 101.57953 * 35.30712 * 8 7 5 12 12 N 1.47022 * 109.88672 * 180.02562 * 5 3 2 13 13 C 1.34776 * 125.64598 * 298.39513 * 12 5 3 14 14 O 1.21556 * 120.00152 * 3.06518 * 13 12 5 15 15 C 1.47884 * 120.00179 * 182.78634 * 13 12 5 16 16 C 1.39921 * 120.02894 * 153.67795 * 15 13 12 17 17 C 1.38326 * 120.35859 * 179.97438 * 16 15 13 18 18 C 1.37755 * 120.41340 * 359.97438 * 17 16 15 19 19 C 1.40747 * 120.03896 * 0.02562 * 18 17 16 20 20 C 1.41443 * 120.17754 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99779 * 150.72749 * 20 19 18 22 22 C 1.39938 * 120.00104 * 330.73369 * 20 19 18 23 23 N 1.30826 * 119.99840 * 348.65604 * 22 20 19 24 24 Si 1.86795 * 120.00114 * 168.66047 * 22 20 19 25 25 H 1.48504 * 109.47307 * 89.99674 * 24 22 20 26 26 H 1.48495 * 109.47269 * 209.99650 * 24 22 20 27 27 H 1.48505 * 109.47230 * 330.00056 * 24 22 20 28 28 C 1.39001 * 120.02430 * 333.40618 * 15 13 12 29 29 H 1.09002 * 109.47130 * 299.99891 * 1 2 3 30 30 H 1.09001 * 109.47285 * 59.99683 * 1 2 3 31 31 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 32 32 H 1.08995 * 110.85517 * 100.19515 * 7 5 3 33 33 H 1.09000 * 110.66861 * 337.04404 * 7 5 3 34 34 H 1.09004 * 110.36568 * 204.15716 * 11 8 7 35 35 H 1.08998 * 110.46764 * 81.87710 * 11 8 7 36 36 H 1.07995 * 119.81668 * 0.02562 * 16 15 13 37 37 H 1.07997 * 119.79632 * 180.02562 * 17 16 15 38 38 H 1.08002 * 119.98300 * 180.02562 * 18 17 16 39 39 H 0.97004 * 119.99771 * 180.02562 * 23 22 20 40 40 H 1.08000 * 120.20007 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9666 0.7659 -0.8763 7 6 4.1282 0.6257 1.2830 8 6 5.3096 1.5589 1.6585 9 9 6.4588 1.2301 0.9317 10 9 5.5607 1.5212 3.0342 11 6 4.7600 2.9431 1.2322 12 7 3.9933 2.6817 0.0011 13 6 3.7234 3.5848 -0.9623 14 8 3.0276 3.2738 -1.9092 15 6 4.2686 4.9560 -0.8642 16 6 4.4832 5.7088 -2.0239 17 6 4.9923 6.9922 -1.9400 18 6 5.2936 7.5442 -0.7144 19 6 5.0845 6.8022 0.4632 20 6 5.3932 7.3659 1.7231 21 1 4.8425 7.0610 2.6006 22 6 6.4123 8.3187 1.8326 23 7 7.2237 8.5270 0.8277 24 14 6.6141 9.2930 3.4135 25 1 7.5331 8.5685 4.3276 26 1 7.1787 10.6306 3.1019 27 1 5.2908 9.4544 4.0678 28 6 4.5630 5.5000 0.3806 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 4.4838 -0.3849 1.0826 33 1 3.3762 0.6190 2.0721 34 1 5.5809 3.6310 1.0292 35 1 4.1083 3.3491 2.0058 36 1 4.2492 5.2859 -2.9896 37 1 5.1540 7.5654 -2.8409 38 1 5.6904 8.5471 -0.6569 39 1 7.9303 9.1872 0.9037 40 1 4.3953 4.9240 1.2787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881730553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:19 Heat of formation + Delta-G solvation = -176.631356 kcal Electronic energy + Delta-G solvation = -30127.866684 eV Core-core repulsion = 25544.084227 eV Total energy + Delta-G solvation = -4583.782457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.01031 -47.19427 -40.96673 -39.48452 -37.47251 -36.75000 -36.32946 -33.72100 -32.05411 -30.07065 -29.83179 -29.34606 -27.65583 -25.40454 -24.93477 -22.65847 -22.13471 -21.21875 -20.59043 -19.49564 -18.34919 -17.63732 -17.37439 -17.14575 -16.78123 -16.39467 -16.10432 -15.67134 -15.42846 -15.14919 -14.73904 -14.58189 -14.15198 -13.80775 -13.57501 -13.48097 -13.45241 -13.18858 -13.10618 -12.90613 -12.64222 -12.58160 -12.40566 -12.10295 -12.01618 -11.73517 -11.28684 -11.22902 -10.93313 -10.89593 -10.70918 -10.57903 -10.54167 -10.31075 -9.58276 -9.31928 -9.30816 -8.82574 -7.71848 -7.54745 -6.82722 -4.51816 2.00956 2.10655 2.40859 2.67640 2.81094 3.03215 3.05518 3.09689 3.43778 3.48032 3.62732 3.79725 3.87667 4.20694 4.55405 4.62896 4.65866 4.85514 4.96137 5.04669 5.12852 5.21180 5.33927 5.37344 5.45925 5.56759 5.58573 6.02864 6.11373 6.24508 6.31222 6.66224 6.83697 6.91475 7.10347 7.23743 7.44622 7.60357 7.67536 7.81577 7.86018 8.02498 8.44010 8.52757 8.73979 8.76259 10.12520 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.003869 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.409470 B = 7236.169025 C = 8250.661096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.450 3.550 4 O -0.471 6.471 5 C 0.151 3.849 6 H 0.124 0.876 7 C -0.153 4.153 8 C 0.273 3.727 9 F -0.179 7.179 10 F -0.179 7.179 11 C 0.067 3.933 12 N -0.604 5.604 13 C 0.597 3.403 14 O -0.530 6.530 15 C -0.114 4.114 16 C -0.170 4.170 17 C -0.115 4.115 18 C -0.128 4.128 19 C 0.103 3.897 20 C -0.465 4.465 21 H 0.079 0.921 22 C 0.075 3.925 23 N -0.802 5.802 24 Si 0.910 3.090 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.261 1.261 28 C -0.200 4.200 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.281 0.719 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 -14.427 2.888 15.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.288 3.712 4 O -0.354 6.354 5 C 0.045 3.955 6 H 0.141 0.859 7 C -0.192 4.192 8 C 0.236 3.764 9 F -0.160 7.160 10 F -0.160 7.160 11 C -0.057 4.057 12 N -0.340 5.340 13 C 0.391 3.609 14 O -0.406 6.406 15 C -0.117 4.117 16 C -0.190 4.190 17 C -0.134 4.134 18 C -0.148 4.148 19 C 0.100 3.900 20 C -0.495 4.495 21 H 0.097 0.903 22 C -0.142 4.142 23 N -0.427 5.427 24 Si 0.735 3.265 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.185 1.185 28 C -0.220 4.220 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.149 0.851 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.092 0.908 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.851 -14.062 2.235 15.042 hybrid contribution 0.109 0.452 0.788 0.915 sum -4.742 -13.610 3.023 14.726 Atomic orbital electron populations 1.23258 0.76202 1.03503 1.02754 1.86463 1.23525 1.33189 1.84614 1.23840 0.91829 0.81880 0.73628 1.90747 1.66163 1.36124 1.42373 1.20964 0.87908 0.85572 1.01040 0.85879 1.23595 0.97344 1.00775 0.97461 1.21855 0.83039 0.97465 0.74049 1.93068 1.52393 1.93585 1.76905 1.93046 1.95111 1.97226 1.30633 1.23692 0.98891 0.94513 0.88611 1.48095 1.55111 1.08789 1.22033 1.18667 0.78339 0.84513 0.79367 1.90703 1.37656 1.79764 1.32500 1.19108 1.05572 0.91373 0.95637 1.20419 1.07325 0.95570 0.95668 1.20701 1.00526 0.94875 0.97286 1.21608 1.01460 1.00322 0.91372 1.17536 0.89150 0.89589 0.93686 1.19522 1.15695 1.19756 0.94542 0.90302 1.25867 0.94437 0.95747 0.98137 1.69759 1.12897 1.28437 1.31646 0.86270 0.79577 0.79074 0.81598 1.19418 1.20125 1.18511 1.21635 1.09036 0.96750 0.94549 0.91933 0.91779 0.88080 0.86026 0.86835 0.85074 0.87528 0.88135 0.88392 0.85836 0.90757 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.27 10.54 -39.24 -0.41 -4.69 16 3 C 0.45 6.64 6.75 36.01 0.24 6.88 16 4 O -0.47 -8.87 14.72 -24.45 -0.36 -9.23 16 5 C 0.15 2.01 3.39 -68.10 -0.23 1.78 16 6 H 0.12 1.49 8.14 -51.93 -0.42 1.06 16 7 C -0.15 -1.48 6.08 -24.89 -0.15 -1.64 16 8 C 0.27 3.34 2.64 -24.58 -0.06 3.28 16 9 F -0.18 -2.42 17.24 2.25 0.04 -2.38 16 10 F -0.18 -2.23 17.24 2.25 0.04 -2.19 16 11 C 0.07 0.98 4.63 -2.56 -0.01 0.97 16 12 N -0.60 -10.14 2.84 -165.44 -0.47 -10.61 16 13 C 0.60 12.53 6.88 -12.31 -0.08 12.45 16 14 O -0.53 -12.29 15.75 -10.72 -0.17 -12.46 16 15 C -0.11 -2.57 5.70 -105.04 -0.60 -3.17 16 16 C -0.17 -3.86 9.60 -38.92 -0.37 -4.23 16 17 C -0.12 -2.61 10.01 -39.73 -0.40 -3.01 16 18 C -0.13 -3.15 8.65 -38.81 -0.34 -3.48 16 19 C 0.10 2.55 5.54 -106.87 -0.59 1.96 16 20 C -0.47 -11.49 9.06 -37.73 -0.34 -11.83 16 21 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 22 C 0.08 1.78 5.24 -17.34 -0.09 1.69 16 23 N -0.80 -19.64 10.90 55.55 0.61 -19.03 16 24 Si 0.91 17.84 29.57 -169.99 -5.03 12.81 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 27 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 28 C -0.20 -4.53 7.69 -38.44 -0.30 -4.82 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.95 7.84 -51.93 -0.41 0.54 16 34 H 0.13 2.16 6.18 -51.93 -0.32 1.84 16 35 H 0.11 1.48 7.26 -51.93 -0.38 1.10 16 36 H 0.10 2.19 7.86 -52.49 -0.41 1.78 16 37 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 38 H 0.12 3.12 6.27 -52.49 -0.33 2.79 16 39 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 40 H 0.11 2.20 4.50 -52.49 -0.24 1.97 16 LS Contribution 347.32 15.07 5.23 5.23 Total: -1.00 -30.80 347.32 -6.95 -37.75 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.17 Total: 6.57 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.26 Total: -1.76 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.14 Total: -29.64 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.94 Total: -26.38 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.08 Total: -4.58 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.80 -6.95 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881730553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.886 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds