Wall clock time and date at job start Tue Mar 31 2020 22:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34222 * 117.00021 * 2 1 4 4 O 1.20834 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00331 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.99516 * 58.90243 * 5 3 2 7 7 C 1.54332 * 109.99008 * 297.87151 * 5 3 2 8 8 C 1.55162 * 103.02036 * 218.66257 * 7 5 3 9 9 F 1.39900 * 111.00106 * 277.23310 * 8 7 5 10 10 F 1.39896 * 111.00351 * 153.37611 * 8 7 5 11 11 C 1.54909 * 101.57953 * 35.30712 * 8 7 5 12 12 N 1.47022 * 109.88672 * 180.02562 * 5 3 2 13 13 C 1.34776 * 125.64598 * 298.39513 * 12 5 3 14 14 O 1.21556 * 120.00152 * 3.06518 * 13 12 5 15 15 C 1.47884 * 120.00179 * 182.78634 * 13 12 5 16 16 C 1.39921 * 120.02894 * 153.67795 * 15 13 12 17 17 C 1.38326 * 120.35859 * 179.97438 * 16 15 13 18 18 C 1.37755 * 120.41340 * 359.97438 * 17 16 15 19 19 C 1.40747 * 120.03896 * 0.02562 * 18 17 16 20 20 C 1.41443 * 120.17754 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99779 * 150.72749 * 20 19 18 22 22 C 1.39938 * 120.00104 * 330.73369 * 20 19 18 23 23 N 1.30826 * 119.99840 * 348.65604 * 22 20 19 24 24 Si 1.86795 * 120.00114 * 168.66047 * 22 20 19 25 25 H 1.48504 * 109.47307 * 89.99674 * 24 22 20 26 26 H 1.48495 * 109.47269 * 209.99650 * 24 22 20 27 27 H 1.48505 * 109.47230 * 330.00056 * 24 22 20 28 28 C 1.39001 * 120.02430 * 333.40618 * 15 13 12 29 29 H 1.09002 * 109.47130 * 299.99891 * 1 2 3 30 30 H 1.09001 * 109.47285 * 59.99683 * 1 2 3 31 31 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 32 32 H 1.08995 * 110.85517 * 100.19515 * 7 5 3 33 33 H 1.09000 * 110.66861 * 337.04404 * 7 5 3 34 34 H 1.09004 * 110.36568 * 204.15716 * 11 8 7 35 35 H 1.08998 * 110.46764 * 81.87710 * 11 8 7 36 36 H 1.07995 * 119.81668 * 0.02562 * 16 15 13 37 37 H 1.07997 * 119.79632 * 180.02562 * 17 16 15 38 38 H 1.08002 * 119.98300 * 180.02562 * 18 17 16 39 39 H 0.97004 * 119.99771 * 180.02562 * 23 22 20 40 40 H 1.08000 * 120.20007 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9666 0.7659 -0.8763 7 6 4.1282 0.6257 1.2830 8 6 5.3096 1.5589 1.6585 9 9 6.4588 1.2301 0.9317 10 9 5.5607 1.5212 3.0342 11 6 4.7600 2.9431 1.2322 12 7 3.9933 2.6817 0.0011 13 6 3.7234 3.5848 -0.9623 14 8 3.0276 3.2738 -1.9092 15 6 4.2686 4.9560 -0.8642 16 6 4.4832 5.7088 -2.0239 17 6 4.9923 6.9922 -1.9400 18 6 5.2936 7.5442 -0.7144 19 6 5.0845 6.8022 0.4632 20 6 5.3932 7.3659 1.7231 21 1 4.8425 7.0610 2.6006 22 6 6.4123 8.3187 1.8326 23 7 7.2237 8.5270 0.8277 24 14 6.6141 9.2930 3.4135 25 1 7.5331 8.5685 4.3276 26 1 7.1787 10.6306 3.1019 27 1 5.2908 9.4544 4.0678 28 6 4.5630 5.5000 0.3806 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 4.4838 -0.3849 1.0826 33 1 3.3762 0.6190 2.0721 34 1 5.5809 3.6310 1.0292 35 1 4.1083 3.3491 2.0058 36 1 4.2492 5.2859 -2.9896 37 1 5.1540 7.5654 -2.8409 38 1 5.6904 8.5471 -0.6569 39 1 7.9303 9.1872 0.9037 40 1 4.3953 4.9240 1.2787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881730553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:19 Heat of formation + Delta-G solvation = -193.038757 kcal Electronic energy + Delta-G solvation = -30128.578162 eV Core-core repulsion = 25544.084227 eV Total energy + Delta-G solvation = -4584.493935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.02859 -48.21442 -42.18344 -40.86843 -39.06333 -38.25239 -37.47130 -35.52615 -33.37895 -31.83954 -31.20244 -30.77922 -28.53070 -27.22991 -26.19100 -24.07305 -23.29266 -22.79889 -22.06080 -20.93013 -19.48493 -19.16023 -18.54948 -18.35271 -17.88018 -17.64482 -17.41566 -17.05745 -16.85021 -16.57972 -16.36981 -15.99729 -15.17074 -15.03323 -14.97277 -14.89433 -14.54123 -14.46041 -14.37567 -14.24758 -14.08159 -13.89777 -13.53490 -13.47604 -13.19469 -12.93602 -12.84944 -12.82768 -12.58146 -12.26054 -12.11363 -11.90678 -11.85030 -11.75264 -11.35278 -11.09134 -10.98955 -10.18711 -9.52955 -9.40308 -8.61580 -6.40377 0.31414 0.89826 0.98563 1.21974 1.42679 1.47758 1.55543 1.60520 1.98893 2.23255 2.37871 2.50860 2.74733 2.77361 3.27499 3.55820 3.62373 3.66928 3.75175 3.91503 4.25408 4.27961 4.29728 4.30091 4.36873 4.46470 4.51764 4.59638 4.67323 4.82539 4.88994 4.97892 5.11842 5.21871 5.29779 5.46471 5.71491 5.89536 5.99633 6.07383 6.18012 6.57249 6.58118 6.88534 6.89562 6.95126 8.35731 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.003869 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.409470 B = 7236.169025 C = 8250.661096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.454 3.546 4 O -0.519 6.519 5 C 0.142 3.858 6 H 0.140 0.860 7 C -0.133 4.133 8 C 0.283 3.717 9 F -0.186 7.186 10 F -0.177 7.177 11 C 0.058 3.942 12 N -0.601 5.601 13 C 0.596 3.404 14 O -0.559 6.559 15 C -0.123 4.123 16 C -0.182 4.182 17 C -0.113 4.113 18 C -0.152 4.152 19 C 0.077 3.923 20 C -0.493 4.493 21 H 0.082 0.918 22 C 0.037 3.963 23 N -0.830 5.830 24 Si 0.981 3.019 25 H -0.262 1.262 26 H -0.270 1.270 27 H -0.259 1.259 28 C -0.198 4.198 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.142 0.858 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.288 0.712 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 -16.525 4.413 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.295 3.705 4 O -0.406 6.406 5 C 0.037 3.963 6 H 0.157 0.843 7 C -0.171 4.171 8 C 0.245 3.755 9 F -0.167 7.167 10 F -0.158 7.158 11 C -0.066 4.066 12 N -0.336 5.336 13 C 0.389 3.611 14 O -0.438 6.438 15 C -0.126 4.126 16 C -0.203 4.203 17 C -0.131 4.131 18 C -0.172 4.172 19 C 0.074 3.926 20 C -0.523 4.523 21 H 0.100 0.900 22 C -0.178 4.178 23 N -0.456 5.456 24 Si 0.802 3.198 25 H -0.186 1.186 26 H -0.195 1.195 27 H -0.183 1.183 28 C -0.217 4.217 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.151 0.849 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.938 -16.219 3.781 17.370 hybrid contribution 0.102 1.001 0.279 1.045 sum -4.836 -15.218 4.060 16.475 Atomic orbital electron populations 1.23577 0.74593 1.06009 1.02186 1.86460 1.24985 1.31308 1.83757 1.24041 0.92247 0.81942 0.72267 1.90740 1.67215 1.37805 1.44879 1.21366 0.87521 0.83565 1.03858 0.84290 1.23683 0.96101 1.01455 0.95856 1.21684 0.83482 0.96386 0.73928 1.93062 1.53020 1.93454 1.77118 1.93057 1.95150 1.97132 1.30442 1.23727 0.98340 0.96453 0.88062 1.47889 1.54368 1.09919 1.21394 1.18329 0.78195 0.84588 0.79992 1.90674 1.38977 1.80292 1.33875 1.19426 1.04921 0.92729 0.95547 1.20625 1.07575 0.95790 0.96263 1.20917 0.99561 0.95041 0.97600 1.21585 1.03230 1.00139 0.92260 1.17890 0.89903 0.90588 0.94177 1.19787 1.16652 1.21163 0.94649 0.89956 1.26678 0.93612 0.96102 1.01365 1.69821 1.13349 1.28942 1.33524 0.85206 0.79513 0.77614 0.77456 1.18628 1.19494 1.18328 1.21840 1.08169 0.96231 0.95481 0.91855 0.93120 0.83978 0.82023 0.84895 0.87254 0.86654 0.87441 0.86073 0.87105 0.90108 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -7.34 10.54 -51.34 -0.54 -7.88 16 3 C 0.45 12.67 6.75 71.24 0.48 13.15 16 4 O -0.52 -19.43 14.72 27.39 0.40 -19.03 16 5 C 0.14 3.47 3.39 44.60 0.15 3.62 16 6 H 0.14 3.00 8.14 -2.38 -0.02 2.98 16 7 C -0.13 -2.07 6.08 31.79 0.19 -1.88 16 8 C 0.28 6.23 2.64 31.99 0.08 6.32 16 9 F -0.19 -4.64 17.24 44.97 0.78 -3.87 16 10 F -0.18 -3.95 17.24 44.97 0.78 -3.17 16 11 C 0.06 1.66 4.63 86.86 0.40 2.06 16 12 N -0.60 -19.80 2.84 -795.61 -2.26 -22.06 16 13 C 0.60 25.27 6.88 86.80 0.60 25.87 16 14 O -0.56 -26.27 15.75 11.45 0.18 -26.09 16 15 C -0.12 -5.68 5.70 -20.13 -0.11 -5.80 16 16 C -0.18 -8.48 9.60 22.70 0.22 -8.26 16 17 C -0.11 -5.23 10.01 22.18 0.22 -5.01 16 18 C -0.15 -7.76 8.65 22.77 0.20 -7.56 16 19 C 0.08 3.93 5.54 -21.32 -0.12 3.81 16 20 C -0.49 -24.85 9.06 23.47 0.21 -24.64 16 21 H 0.08 3.94 7.87 -2.91 -0.02 3.92 16 22 C 0.04 1.76 5.24 85.25 0.45 2.21 16 23 N -0.83 -41.39 10.90 21.82 0.24 -41.16 16 24 Si 0.98 36.40 29.57 68.60 2.03 38.43 16 25 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 26 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 27 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 28 C -0.20 -9.18 7.69 23.01 0.18 -9.00 16 29 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 31 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.13 1.65 7.84 -2.39 -0.02 1.63 16 34 H 0.11 3.65 6.18 -2.39 -0.01 3.64 16 35 H 0.12 3.10 7.26 -2.39 -0.02 3.09 16 36 H 0.11 4.77 7.86 -2.91 -0.02 4.75 16 37 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 38 H 0.11 5.83 6.27 -2.91 -0.02 5.82 16 39 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 40 H 0.13 5.26 4.50 -2.91 -0.01 5.24 16 Total: -1.00 -69.04 347.32 7.05 -61.99 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 1.10 Total: 26.27 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.35 Total: -3.44 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -2.02 Total: -63.21 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: 0.04 Total: -53.00 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 1.55 Total: -7.04 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Total: -69.04 7.05 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881730553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.049 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds