Wall clock time and date at job start Tue Mar 31 2020 22:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 116.99535 * 2 1 4 4 O 1.20826 * 120.00299 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99616 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.55327 * 325.66688 * 5 3 2 7 7 C 1.53000 * 117.49960 * 179.97438 * 5 3 2 8 8 H 1.08997 * 117.50254 * 144.97022 * 7 5 3 9 9 C 1.53003 * 117.49650 * 359.97438 * 7 5 3 10 10 N 1.46507 * 109.47079 * 175.08481 * 9 7 5 11 11 C 1.34778 * 119.99940 * 180.02562 * 10 9 7 12 12 O 1.21551 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.47886 * 119.99971 * 179.97438 * 11 10 9 14 14 C 1.39918 * 120.02163 * 0.02843 * 13 11 10 15 15 C 1.38329 * 120.35507 * 179.97438 * 14 13 11 16 16 C 1.37760 * 120.41449 * 0.04051 * 15 14 13 17 17 C 1.40755 * 120.03564 * 359.95675 * 16 15 14 18 18 C 1.41434 * 120.17413 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99908 * 334.74726 * 18 17 16 20 20 C 1.39938 * 119.99910 * 154.75168 * 18 17 16 21 21 N 1.30821 * 119.99928 * 342.80851 * 20 18 17 22 22 Si 1.86797 * 120.00003 * 162.80778 * 20 18 17 23 23 H 1.48503 * 109.47390 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47154 * 119.99933 * 22 20 18 25 25 H 1.48504 * 109.47309 * 239.99489 * 22 20 18 26 26 C 1.38985 * 120.02489 * 179.97438 * 13 11 10 27 27 C 1.52997 * 60.03599 * 252.47622 * 7 5 3 28 28 F 1.39902 * 117.50350 * 107.49668 * 27 7 5 29 29 F 1.39907 * 117.49688 * 252.52454 * 27 7 5 30 30 H 1.09002 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47290 * 300.00318 * 1 2 3 32 32 H 1.08999 * 109.47332 * 60.00442 * 1 2 3 33 33 H 1.09000 * 109.47020 * 55.09109 * 9 7 5 34 34 H 1.08992 * 109.47610 * 295.08712 * 9 7 5 35 35 H 0.96999 * 119.99721 * 0.02562 * 10 9 7 36 36 H 1.07997 * 119.82774 * 359.96855 * 14 13 11 37 37 H 1.07999 * 119.79482 * 180.02562 * 15 14 13 38 38 H 1.07991 * 119.98298 * 179.97438 * 16 15 14 39 39 H 0.97008 * 120.00286 * 180.02562 * 21 20 18 40 40 H 1.08010 * 120.20375 * 359.75045 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 4.0785 0.4885 0.5537 7 6 4.2007 2.6672 -0.0012 8 1 5.1300 2.7971 0.5534 9 6 3.2586 3.8728 -0.0017 10 7 4.0423 5.1050 0.1161 11 6 3.4197 6.3002 0.1372 12 8 2.2080 6.3557 0.0589 13 6 4.2108 7.5440 0.2568 14 6 5.6056 7.4805 0.3474 15 6 6.3523 8.6396 0.4589 16 6 5.7318 9.8693 0.4828 17 6 4.3297 9.9529 0.3927 18 6 3.6896 11.2139 0.4165 19 1 4.1707 12.0547 0.8940 20 6 2.4331 11.3721 -0.1787 21 7 1.9975 10.4826 -1.0334 22 14 1.3776 12.8533 0.2473 23 1 2.0926 13.7037 1.2326 24 1 1.1087 13.6399 -0.9832 25 1 0.0921 12.3935 0.8316 26 6 3.5693 8.7768 0.2780 27 6 4.2465 1.8060 -1.2649 28 9 3.4238 2.1811 -2.3325 29 9 5.4780 1.2450 -1.6200 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.5715 3.7973 0.8411 34 1 2.6916 3.8905 -0.9324 35 1 5.0093 5.0606 0.1790 36 1 6.1019 6.5215 0.3303 37 1 7.4284 8.5801 0.5278 38 1 6.3216 10.7698 0.5705 39 1 1.1266 10.5925 -1.4463 40 1 2.4932 8.8307 0.2034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881820726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:26 Heat of formation + Delta-G solvation = -160.919808 kcal Electronic energy + Delta-G solvation = -28596.042691 eV Core-core repulsion = 24012.941538 eV Total energy + Delta-G solvation = -4583.101153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.15949 -47.82043 -41.02728 -39.23069 -37.82351 -36.94158 -36.22625 -33.95195 -33.56337 -30.33162 -29.43352 -28.70257 -27.09388 -25.25698 -24.71056 -22.52088 -21.74289 -21.01985 -20.86114 -19.49165 -18.74031 -17.96457 -17.67186 -17.38265 -16.70273 -16.63928 -16.16820 -15.73193 -15.49974 -15.02502 -14.69594 -14.59193 -14.36307 -14.10755 -13.98010 -13.85657 -13.66030 -13.45302 -13.18431 -12.85578 -12.65825 -12.51627 -12.47675 -12.33212 -11.67883 -11.55848 -11.18277 -11.15794 -11.08040 -10.89286 -10.72729 -10.47698 -10.35878 -10.00963 -9.67991 -9.21405 -9.01411 -8.67402 -7.62202 -7.50804 -6.78290 -4.40444 1.36437 2.01657 2.22045 2.48864 2.67409 2.81777 3.09314 3.14114 3.15845 3.18902 3.85573 3.88545 3.93732 3.96794 4.04663 4.32384 4.63266 4.65952 4.76924 4.86584 4.88943 5.04602 5.20053 5.60317 5.65318 5.74116 5.88877 6.04997 6.14326 6.27177 6.72370 6.79414 6.99555 7.02124 7.22216 7.27637 7.38978 7.70377 7.75669 7.93025 8.08332 8.19745 8.51688 8.81561 8.84410 8.95847 10.16468 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.002639 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.156712 B =10605.969428 C =11840.282867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.486 3.514 4 O -0.470 6.470 5 C -0.161 4.161 6 H 0.167 0.833 7 C -0.122 4.122 8 H 0.155 0.845 9 C 0.150 3.850 10 N -0.740 5.740 11 C 0.565 3.435 12 O -0.539 6.539 13 C -0.127 4.127 14 C -0.218 4.218 15 C -0.098 4.098 16 C -0.212 4.212 17 C 0.098 3.902 18 C -0.460 4.460 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.910 3.090 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.271 1.271 26 C -0.091 4.091 27 C 0.235 3.765 28 F -0.143 7.143 29 F -0.146 7.146 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -20.676 2.104 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.327 3.673 4 O -0.355 6.355 5 C -0.181 4.181 6 H 0.184 0.816 7 C -0.141 4.141 8 H 0.173 0.827 9 C 0.027 3.973 10 N -0.396 5.396 11 C 0.355 3.645 12 O -0.416 6.416 13 C -0.130 4.130 14 C -0.238 4.238 15 C -0.116 4.116 16 C -0.231 4.231 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.100 0.900 20 C -0.147 4.147 21 N -0.407 5.407 22 Si 0.734 3.266 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.111 4.111 27 C 0.197 3.803 28 F -0.123 7.123 29 F -0.126 7.126 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.749 -20.395 1.818 20.489 hybrid contribution -0.033 0.316 -0.155 0.353 sum 0.716 -20.079 1.663 20.160 Atomic orbital electron populations 1.23376 0.75189 1.04019 1.03223 1.86445 1.24157 1.32432 1.83941 1.22038 0.89399 0.82076 0.73819 1.90831 1.66269 1.35554 1.42884 1.23329 0.91223 1.01892 1.01686 0.81583 1.24113 1.02749 0.91565 0.95671 0.82749 1.20950 0.91468 0.79907 1.04973 1.45985 1.10364 1.05382 1.77840 1.18826 0.87508 0.83337 0.74800 1.90725 1.14351 1.87252 1.49314 1.19450 0.93213 0.92157 1.08212 1.20328 0.92423 0.96479 1.14591 1.20435 0.97290 0.93010 1.00889 1.21105 0.94495 0.95734 1.11812 1.17612 0.90827 0.93112 0.88860 1.19614 1.01285 0.96115 1.31845 0.90039 1.25969 0.97927 0.97872 0.92886 1.69792 1.18835 1.33622 1.18486 0.86235 0.79930 0.81069 0.79368 1.18359 1.19930 1.19561 1.21649 1.00793 0.89462 0.99237 1.19717 0.79074 1.00898 0.80576 1.93102 1.70516 1.91124 1.57575 1.93093 1.40977 1.85442 1.93114 0.87743 0.91377 0.91389 0.88761 0.89733 0.76641 0.89245 0.88894 0.88613 0.90469 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.30 10.57 -39.26 -0.41 -3.71 16 3 C 0.49 5.28 7.36 36.00 0.26 5.55 16 4 O -0.47 -6.70 12.86 -18.75 -0.24 -6.94 16 5 C -0.16 -1.34 6.29 -91.73 -0.58 -1.92 16 6 H 0.17 0.77 8.14 -51.93 -0.42 0.35 16 7 C -0.12 -1.17 5.83 -90.62 -0.53 -1.70 16 8 H 0.15 0.99 8.04 -51.93 -0.42 0.58 16 9 C 0.15 2.20 4.20 -4.04 -0.02 2.18 16 10 N -0.74 -12.23 5.51 -61.23 -0.34 -12.57 16 11 C 0.56 12.57 7.77 -12.31 -0.10 12.47 16 12 O -0.54 -13.98 16.33 5.32 0.09 -13.90 16 13 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 14 C -0.22 -4.53 9.55 -38.92 -0.37 -4.91 16 15 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 16 C -0.21 -5.02 9.78 -38.81 -0.38 -5.40 16 17 C 0.10 2.61 5.57 -106.87 -0.59 2.02 16 18 C -0.46 -12.13 9.05 -37.73 -0.34 -12.47 16 19 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 20 C 0.07 1.85 5.15 -17.35 -0.09 1.76 16 21 N -0.78 -20.99 10.96 55.55 0.61 -20.39 16 22 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.09 -2.45 8.24 -38.45 -0.32 -2.77 16 27 C 0.23 2.41 5.14 -26.69 -0.14 2.27 16 28 F -0.14 -1.89 16.01 2.25 0.04 -1.85 16 29 F -0.15 -1.44 17.60 2.25 0.04 -1.40 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 33 H 0.09 1.50 6.93 -51.93 -0.36 1.14 16 34 H 0.08 1.45 6.48 -51.93 -0.34 1.11 16 35 H 0.40 5.39 6.42 -40.82 -0.26 5.13 16 36 H 0.09 1.50 6.38 -52.49 -0.33 1.16 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 40 H 0.13 3.91 5.76 -52.48 -0.30 3.60 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -32.90 355.97 -7.12 -40.01 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.10 Total: 9.16 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.13 Total: -7.69 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.27 Total: -32.95 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.57 Total: -24.55 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.08 Total: -3.25 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.90 -7.12 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881820726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.907 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds