Wall clock time and date at job start Tue Mar 31 2020 22:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 116.99535 * 2 1 4 4 O 1.20826 * 120.00299 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99616 * 180.02562 * 3 2 1 6 6 H 1.08997 * 115.55327 * 325.66688 * 5 3 2 7 7 C 1.53000 * 117.49960 * 179.97438 * 5 3 2 8 8 H 1.08997 * 117.50254 * 144.97022 * 7 5 3 9 9 C 1.53003 * 117.49650 * 359.97438 * 7 5 3 10 10 N 1.46507 * 109.47079 * 175.08481 * 9 7 5 11 11 C 1.34778 * 119.99940 * 180.02562 * 10 9 7 12 12 O 1.21551 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.47886 * 119.99971 * 179.97438 * 11 10 9 14 14 C 1.39918 * 120.02163 * 0.02843 * 13 11 10 15 15 C 1.38329 * 120.35507 * 179.97438 * 14 13 11 16 16 C 1.37760 * 120.41449 * 0.04051 * 15 14 13 17 17 C 1.40755 * 120.03564 * 359.95675 * 16 15 14 18 18 C 1.41434 * 120.17413 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99908 * 334.74726 * 18 17 16 20 20 C 1.39938 * 119.99910 * 154.75168 * 18 17 16 21 21 N 1.30821 * 119.99928 * 342.80851 * 20 18 17 22 22 Si 1.86797 * 120.00003 * 162.80778 * 20 18 17 23 23 H 1.48503 * 109.47390 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47154 * 119.99933 * 22 20 18 25 25 H 1.48504 * 109.47309 * 239.99489 * 22 20 18 26 26 C 1.38985 * 120.02489 * 179.97438 * 13 11 10 27 27 C 1.52997 * 60.03599 * 252.47622 * 7 5 3 28 28 F 1.39902 * 117.50350 * 107.49668 * 27 7 5 29 29 F 1.39907 * 117.49688 * 252.52454 * 27 7 5 30 30 H 1.09002 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47290 * 300.00318 * 1 2 3 32 32 H 1.08999 * 109.47332 * 60.00442 * 1 2 3 33 33 H 1.09000 * 109.47020 * 55.09109 * 9 7 5 34 34 H 1.08992 * 109.47610 * 295.08712 * 9 7 5 35 35 H 0.96999 * 119.99721 * 0.02562 * 10 9 7 36 36 H 1.07997 * 119.82774 * 359.96855 * 14 13 11 37 37 H 1.07999 * 119.79482 * 180.02562 * 15 14 13 38 38 H 1.07991 * 119.98298 * 179.97438 * 16 15 14 39 39 H 0.97008 * 120.00286 * 180.02562 * 21 20 18 40 40 H 1.08010 * 120.20375 * 359.75045 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 4.0785 0.4885 0.5537 7 6 4.2007 2.6672 -0.0012 8 1 5.1300 2.7971 0.5534 9 6 3.2586 3.8728 -0.0017 10 7 4.0423 5.1050 0.1161 11 6 3.4197 6.3002 0.1372 12 8 2.2080 6.3557 0.0589 13 6 4.2108 7.5440 0.2568 14 6 5.6056 7.4805 0.3474 15 6 6.3523 8.6396 0.4589 16 6 5.7318 9.8693 0.4828 17 6 4.3297 9.9529 0.3927 18 6 3.6896 11.2139 0.4165 19 1 4.1707 12.0547 0.8940 20 6 2.4331 11.3721 -0.1787 21 7 1.9975 10.4826 -1.0334 22 14 1.3776 12.8533 0.2473 23 1 2.0926 13.7037 1.2326 24 1 1.1087 13.6399 -0.9832 25 1 0.0921 12.3935 0.8316 26 6 3.5693 8.7768 0.2780 27 6 4.2465 1.8060 -1.2649 28 9 3.4238 2.1811 -2.3325 29 9 5.4780 1.2450 -1.6200 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.5715 3.7973 0.8411 34 1 2.6916 3.8905 -0.9324 35 1 5.0093 5.0606 0.1790 36 1 6.1019 6.5215 0.3303 37 1 7.4284 8.5801 0.5278 38 1 6.3216 10.7698 0.5705 39 1 1.1266 10.5925 -1.4463 40 1 2.4932 8.8307 0.2034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881820726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:25 Heat of formation + Delta-G solvation = -182.054380 kcal Electronic energy + Delta-G solvation = -28596.959155 eV Core-core repulsion = 24012.941538 eV Total energy + Delta-G solvation = -4584.017617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.98708 -48.65138 -41.88661 -40.89648 -38.98971 -38.46360 -37.19402 -35.68556 -35.17545 -32.12531 -31.27435 -29.50946 -28.29517 -27.09394 -25.53138 -24.09685 -22.90086 -22.61305 -21.89057 -21.08300 -19.69472 -19.44528 -18.64042 -18.35091 -17.87273 -17.58130 -17.37784 -17.10154 -16.78135 -16.50254 -16.32060 -16.11064 -15.44990 -15.23466 -15.07647 -14.87504 -14.78066 -14.56464 -14.50928 -14.28019 -14.21014 -14.14781 -13.48659 -13.46042 -13.05958 -12.95532 -12.79436 -12.56180 -12.43366 -12.18002 -11.92319 -11.91307 -11.74965 -11.49391 -11.23281 -11.08848 -10.81783 -10.20359 -9.46700 -9.37289 -8.66115 -6.38160 0.37655 0.53729 1.01053 1.29939 1.35776 1.46378 1.52248 1.69437 1.88912 2.05698 2.09478 2.19111 2.78858 2.90072 3.09338 3.23461 3.58681 3.70364 3.83879 4.03208 4.21424 4.24025 4.27289 4.33427 4.44493 4.51559 4.61210 4.66521 4.81509 4.93651 5.09317 5.18196 5.20392 5.31472 5.36482 5.52462 5.87180 5.92760 6.06228 6.29397 6.45895 6.50133 6.67736 6.88382 6.95426 7.28978 8.30741 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.002639 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.156712 B =10605.969428 C =11840.282867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.481 3.519 4 O -0.514 6.514 5 C -0.135 4.135 6 H 0.216 0.784 7 C -0.115 4.115 8 H 0.200 0.800 9 C 0.152 3.848 10 N -0.712 5.712 11 C 0.560 3.440 12 O -0.589 6.589 13 C -0.139 4.139 14 C -0.193 4.193 15 C -0.095 4.095 16 C -0.215 4.215 17 C 0.065 3.935 18 C -0.497 4.497 19 H 0.085 0.915 20 C 0.027 3.973 21 N -0.828 5.828 22 Si 0.983 3.017 23 H -0.250 1.250 24 H -0.264 1.264 25 H -0.272 1.272 26 C -0.132 4.132 27 C 0.223 3.777 28 F -0.168 7.168 29 F -0.140 7.140 30 H 0.139 0.861 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.417 0.583 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.285 0.715 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.151 -22.937 3.192 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.324 3.676 4 O -0.402 6.402 5 C -0.155 4.155 6 H 0.233 0.767 7 C -0.134 4.134 8 H 0.217 0.783 9 C 0.029 3.971 10 N -0.367 5.367 11 C 0.350 3.650 12 O -0.470 6.470 13 C -0.142 4.142 14 C -0.213 4.213 15 C -0.113 4.113 16 C -0.235 4.235 17 C 0.063 3.937 18 C -0.526 4.526 19 H 0.103 0.897 20 C -0.187 4.187 21 N -0.454 5.454 22 Si 0.803 3.197 23 H -0.173 1.173 24 H -0.189 1.189 25 H -0.197 1.197 26 C -0.152 4.152 27 C 0.186 3.814 28 F -0.148 7.148 29 F -0.120 7.120 30 H 0.157 0.843 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.256 0.744 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.877 -22.714 2.909 23.225 hybrid contribution -0.866 0.798 -0.499 1.279 sum 3.011 -21.916 2.410 22.253 Atomic orbital electron populations 1.23629 0.74122 1.06126 1.02602 1.86449 1.25263 1.31521 1.83302 1.22624 0.90587 0.81848 0.72587 1.90839 1.67471 1.36974 1.44903 1.23535 0.89581 1.02138 1.00234 0.76717 1.24103 1.03367 0.89861 0.96075 0.78265 1.20843 0.92325 0.80980 1.02929 1.45696 1.11317 1.04348 1.75314 1.18791 0.86826 0.84667 0.74748 1.90702 1.16508 1.88049 1.51765 1.19742 0.94989 0.91740 1.07719 1.20896 0.90862 0.99012 1.10513 1.20957 0.99778 0.91727 0.98871 1.21437 0.93460 0.97838 1.10733 1.17958 0.92488 0.93185 0.90043 1.19884 1.02766 0.96538 1.33453 0.89726 1.26872 0.98890 1.00787 0.92174 1.69902 1.19338 1.35982 1.20154 0.85148 0.77698 0.77381 0.79431 1.17262 1.18912 1.19699 1.21444 0.99383 0.91433 1.02984 1.19882 0.79345 1.01938 0.80256 1.93057 1.71367 1.91501 1.58890 1.93108 1.40481 1.85314 1.93082 0.84256 0.91668 0.92449 0.90156 0.92789 0.74404 0.83953 0.84016 0.87281 0.90447 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -5.96 10.57 -51.42 -0.54 -6.50 16 3 C 0.48 9.90 7.36 71.23 0.52 10.43 16 4 O -0.51 -15.02 12.86 21.96 0.28 -14.73 16 5 C -0.14 -1.80 6.29 -11.51 -0.07 -1.88 16 6 H 0.22 0.76 8.14 -2.39 -0.02 0.74 16 7 C -0.12 -1.83 5.83 -10.79 -0.06 -1.90 16 8 H 0.20 1.36 8.04 -2.39 -0.02 1.35 16 9 C 0.15 4.36 4.20 86.38 0.36 4.72 16 10 N -0.71 -22.39 5.51 -465.92 -2.57 -24.96 16 11 C 0.56 25.32 7.77 86.80 0.67 26.00 16 12 O -0.59 -32.42 16.33 -3.88 -0.06 -32.48 16 13 C -0.14 -6.60 5.87 -20.14 -0.12 -6.72 16 14 C -0.19 -7.37 9.55 22.70 0.22 -7.15 16 15 C -0.10 -3.68 10.01 22.18 0.22 -3.46 16 16 C -0.21 -9.99 9.78 22.77 0.22 -9.77 16 17 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 18 C -0.50 -27.44 9.05 23.47 0.21 -27.23 16 19 H 0.08 4.40 7.90 -2.91 -0.02 4.37 16 20 C 0.03 1.45 5.15 85.26 0.44 1.89 16 21 N -0.83 -47.51 10.96 21.82 0.24 -47.27 16 22 Si 0.98 40.58 29.59 68.60 2.03 42.61 16 23 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 C -0.13 -7.46 8.24 23.01 0.19 -7.27 16 27 C 0.22 4.00 5.14 30.62 0.16 4.16 16 28 F -0.17 -4.37 16.01 44.97 0.72 -3.65 16 29 F -0.14 -2.26 17.60 44.97 0.79 -1.47 16 30 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 32 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.08 2.59 6.93 -2.39 -0.02 2.57 16 34 H 0.05 1.92 6.48 -2.39 -0.02 1.90 16 35 H 0.42 9.56 6.42 -92.71 -0.60 8.97 16 36 H 0.14 3.87 6.38 -2.91 -0.02 3.85 16 37 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.11 4.67 8.06 -2.92 -0.02 4.64 16 39 H 0.29 15.12 8.30 -92.70 -0.77 14.35 16 40 H 0.10 6.08 5.76 -2.91 -0.02 6.06 16 Total: -1.00 -80.65 355.97 5.46 -75.19 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.52 Total: 26.40 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.05 Total: -13.12 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -2.33 Total: -72.23 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -0.32 Total: -53.72 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 1.51 Total: -5.12 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -80.65 5.46 -75.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881820726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.864 kcal (2) G-P(sol) polarization free energy of solvation -80.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds