Wall clock time and date at job start Tue Mar 31 2020 22:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99742 * 2 1 4 4 O 1.20820 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99556 * 179.97438 * 3 2 1 6 6 H 1.08995 * 115.56380 * 325.68478 * 5 3 2 7 7 C 1.52997 * 117.49403 * 179.97438 * 5 3 2 8 8 H 1.08997 * 117.52185 * 145.03445 * 7 5 3 9 9 C 1.53005 * 117.50052 * 359.97438 * 7 5 3 10 10 N 1.46500 * 109.47190 * 174.98506 * 9 7 5 11 11 C 1.34774 * 120.00409 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99583 * 0.02562 * 11 10 9 13 13 C 1.47640 * 120.00295 * 180.02562 * 11 10 9 14 14 C 1.40007 * 119.89546 * 359.72388 * 13 11 10 15 15 C 1.36323 * 120.10744 * 179.75775 * 14 13 11 16 16 C 1.40891 * 119.88708 * 0.51729 * 15 14 13 17 17 C 1.41111 * 120.09880 * 179.71302 * 16 15 14 18 18 H 1.07996 * 119.99541 * 155.08320 * 17 16 15 19 19 C 1.40223 * 120.00173 * 335.08805 * 17 16 15 20 20 N 1.30641 * 119.99992 * 342.20282 * 19 17 16 21 21 Si 1.86801 * 120.00005 * 162.20541 * 19 17 16 22 22 H 1.48497 * 109.47091 * 94.65965 * 21 19 17 23 23 H 1.48499 * 109.46791 * 214.65985 * 21 19 17 24 24 H 1.48499 * 109.46805 * 334.65809 * 21 19 17 25 25 C 1.40888 * 119.79514 * 359.73926 * 16 15 14 26 26 C 1.36319 * 119.88965 * 359.97438 * 25 16 15 27 27 C 1.52998 * 117.49515 * 111.37697 * 5 3 2 28 28 F 1.39898 * 117.50159 * 359.97438 * 27 5 3 29 29 F 1.39903 * 117.49932 * 214.97348 * 27 5 3 30 30 H 1.08996 * 109.47316 * 300.00086 * 1 2 3 31 31 H 1.08992 * 109.47439 * 60.00587 * 1 2 3 32 32 H 1.09003 * 109.47103 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47367 * 294.98730 * 9 7 5 34 34 H 1.09004 * 109.46700 * 54.98997 * 9 7 5 35 35 H 0.97009 * 119.99893 * 0.02562 * 10 9 7 36 36 H 1.08001 * 119.94782 * 0.02562 * 14 13 11 37 37 H 1.07995 * 120.05540 * 180.22868 * 15 14 13 38 38 H 0.97003 * 120.00347 * 180.02562 * 20 19 17 39 39 H 1.07996 * 120.05515 * 179.97438 * 25 16 15 40 40 H 1.07998 * 119.94328 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0783 0.4886 0.5552 7 6 4.2007 2.6671 -0.0001 8 1 5.1301 2.7974 0.5542 9 6 3.2586 3.8728 -0.0018 10 7 4.0420 5.1048 0.1185 11 6 3.4195 6.3000 0.1391 12 8 2.2076 6.3556 0.0582 13 6 4.2091 7.5417 0.2598 14 6 5.6040 7.4748 0.3586 15 6 6.3377 8.6188 0.4653 16 6 5.6890 9.8693 0.4870 17 6 6.4437 11.0560 0.6034 18 1 6.0455 11.9878 0.2299 19 6 7.7105 11.0253 1.2038 20 7 8.0528 10.0130 1.9553 21 14 8.9086 12.4320 0.9292 22 1 8.7882 13.4089 2.0411 23 1 10.2944 11.9002 0.8852 24 1 8.5954 13.1048 -0.3571 25 6 4.2847 9.9312 0.3927 26 6 3.5600 8.7821 0.2804 27 6 4.2463 1.8056 -1.2631 28 9 3.4235 2.1800 -2.3308 29 9 5.4777 1.2445 -1.6182 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.6936 3.8910 -0.9337 34 1 2.5696 3.7967 0.8394 35 1 5.0089 5.0604 0.1834 36 1 6.1000 6.5155 0.3460 37 1 7.4139 8.5664 0.5378 38 1 8.9290 9.9919 2.3710 39 1 3.7831 10.8875 0.4093 40 1 2.4835 8.8286 0.2076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881824618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:29 Heat of formation + Delta-G solvation = -165.214253 kcal Electronic energy + Delta-G solvation = -28322.176806 eV Core-core repulsion = 23738.889431 eV Total energy + Delta-G solvation = -4583.287374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.14977 -47.80854 -41.02590 -39.13697 -37.82487 -37.02350 -36.21946 -33.87089 -33.73887 -30.35211 -29.44456 -28.72976 -27.34082 -25.52914 -24.64027 -22.16756 -21.66714 -21.01999 -20.82942 -19.57199 -18.72628 -17.84987 -17.55205 -17.49393 -16.91138 -16.69334 -16.35710 -15.78820 -15.60841 -15.25532 -14.60424 -14.34270 -14.16757 -14.03626 -13.96907 -13.88779 -13.66911 -13.45977 -13.20911 -12.81452 -12.73232 -12.51820 -12.34929 -12.07741 -11.91091 -11.60914 -11.34388 -11.25007 -11.18295 -10.97824 -10.89213 -10.64027 -10.34038 -10.05783 -9.56088 -9.34944 -8.96357 -8.60929 -7.71887 -7.53862 -7.03944 -4.60121 1.37167 2.02178 2.23762 2.51149 2.68598 2.90378 2.94470 3.00898 3.03903 3.24004 3.73802 3.88043 3.88478 4.01307 4.08952 4.33977 4.57426 4.67730 4.75797 4.85567 4.90927 5.07182 5.18781 5.56666 5.75351 5.80600 5.95480 6.03455 6.20565 6.32772 6.76867 6.82750 6.88002 7.04428 7.13416 7.27800 7.43737 7.64771 7.78491 7.86096 8.07225 8.21589 8.39794 8.63194 8.75375 9.08224 9.88229 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.002255 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.435296 B =12416.161438 C =13224.035281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.487 3.513 4 O -0.471 6.471 5 C -0.162 4.162 6 H 0.167 0.833 7 C -0.122 4.122 8 H 0.155 0.845 9 C 0.153 3.847 10 N -0.745 5.745 11 C 0.573 3.427 12 O -0.569 6.569 13 C -0.283 4.283 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.442 4.442 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.772 5.772 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.238 4.238 26 C -0.022 4.022 27 C 0.234 3.766 28 F -0.144 7.144 29 F -0.146 7.146 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 -19.038 -1.633 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.327 3.673 4 O -0.356 6.356 5 C -0.182 4.182 6 H 0.184 0.816 7 C -0.141 4.141 8 H 0.173 0.827 9 C 0.029 3.971 10 N -0.400 5.400 11 C 0.367 3.633 12 O -0.450 6.450 13 C -0.287 4.287 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.470 4.470 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.396 5.396 21 Si 0.736 3.264 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.258 4.258 26 C -0.041 4.041 27 C 0.197 3.803 28 F -0.124 7.124 29 F -0.126 7.126 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.235 -18.807 -1.588 19.343 hybrid contribution 1.062 0.257 -0.108 1.099 sum -3.172 -18.550 -1.697 18.895 Atomic orbital electron populations 1.23368 0.75241 1.04019 1.03173 1.86448 1.24123 1.32469 1.83946 1.22045 0.89409 0.82044 0.73761 1.90821 1.66278 1.35560 1.42945 1.23323 0.91175 1.02008 1.01704 0.81600 1.24131 1.02804 0.91571 0.95580 0.82745 1.20898 0.91431 0.80043 1.04694 1.45949 1.10232 1.05406 1.78383 1.18565 0.87207 0.83118 0.74362 1.90662 1.14616 1.87485 1.52275 1.18878 0.93102 0.91511 1.25256 1.20461 0.92491 0.96992 0.98234 1.20971 0.99656 0.91650 1.07469 1.17792 0.91075 0.93212 0.85408 1.19840 0.99432 0.95884 1.31847 0.89723 1.26096 0.98746 0.97308 0.92521 1.69742 1.21019 1.29484 1.19315 0.86217 0.79023 0.80871 0.80298 1.19250 1.19746 1.18087 1.20722 0.93956 0.96424 1.14701 1.20367 0.98060 0.91542 0.94110 1.19698 0.79064 1.00967 0.80549 1.93092 1.70545 1.91165 1.57609 1.93094 1.40975 1.85444 1.93106 0.91395 0.91428 0.87743 0.89964 0.88959 0.76832 0.89340 0.86217 0.90266 0.88367 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.28 10.57 -39.26 -0.41 -3.70 16 3 C 0.49 5.28 7.35 36.01 0.26 5.55 16 4 O -0.47 -6.62 12.86 -18.75 -0.24 -6.86 16 5 C -0.16 -1.38 6.29 -91.77 -0.58 -1.96 16 6 H 0.17 0.83 8.14 -51.93 -0.42 0.40 16 7 C -0.12 -1.21 5.83 -90.64 -0.53 -1.74 16 8 H 0.15 1.10 8.04 -51.93 -0.42 0.68 16 9 C 0.15 2.24 4.20 -4.04 -0.02 2.23 16 10 N -0.75 -12.43 5.50 -61.31 -0.34 -12.76 16 11 C 0.57 12.38 7.76 -12.42 -0.10 12.29 16 12 O -0.57 -14.01 16.32 5.29 0.09 -13.93 16 13 C -0.28 -6.49 5.89 -104.73 -0.62 -7.10 16 14 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 15 C -0.18 -4.33 8.63 -39.27 -0.34 -4.67 16 16 C 0.13 3.26 5.57 -106.80 -0.60 2.67 16 17 C -0.44 -10.97 9.04 -37.75 -0.34 -11.31 16 18 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.73 5.13 -17.31 -0.09 1.64 16 20 N -0.77 -18.35 10.97 55.56 0.61 -17.74 16 21 Si 0.91 17.18 29.60 -169.99 -5.03 12.15 16 22 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 24 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 25 C -0.24 -5.80 9.73 -39.27 -0.38 -6.18 16 26 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 27 C 0.23 2.45 5.13 -26.76 -0.14 2.31 16 28 F -0.14 -1.88 16.00 2.25 0.04 -1.84 16 29 F -0.15 -1.48 17.60 2.25 0.04 -1.44 16 30 H 0.07 0.47 8.13 -51.93 -0.42 0.04 16 31 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 1.39 6.48 -51.93 -0.34 1.05 16 34 H 0.09 1.48 6.92 -51.93 -0.36 1.12 16 35 H 0.40 5.62 6.40 -40.82 -0.26 5.36 16 36 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 37 H 0.12 2.93 6.17 -52.49 -0.32 2.61 16 38 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -31.19 355.70 -7.13 -38.32 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.10 Total: 10.05 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -3.14 Total: -7.61 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.27 Total: -30.50 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.57 Total: -24.49 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.08 Total: -3.29 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.19 -7.13 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881824618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.891 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds