Wall clock time and date at job start Tue Mar 31 2020 22:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99742 * 2 1 4 4 O 1.20820 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99556 * 179.97438 * 3 2 1 6 6 H 1.08995 * 115.56380 * 325.68478 * 5 3 2 7 7 C 1.52997 * 117.49403 * 179.97438 * 5 3 2 8 8 H 1.08997 * 117.52185 * 145.03445 * 7 5 3 9 9 C 1.53005 * 117.50052 * 359.97438 * 7 5 3 10 10 N 1.46500 * 109.47190 * 174.98506 * 9 7 5 11 11 C 1.34774 * 120.00409 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99583 * 0.02562 * 11 10 9 13 13 C 1.47640 * 120.00295 * 180.02562 * 11 10 9 14 14 C 1.40007 * 119.89546 * 359.72388 * 13 11 10 15 15 C 1.36323 * 120.10744 * 179.75775 * 14 13 11 16 16 C 1.40891 * 119.88708 * 0.51729 * 15 14 13 17 17 C 1.41111 * 120.09880 * 179.71302 * 16 15 14 18 18 H 1.07996 * 119.99541 * 155.08320 * 17 16 15 19 19 C 1.40223 * 120.00173 * 335.08805 * 17 16 15 20 20 N 1.30641 * 119.99992 * 342.20282 * 19 17 16 21 21 Si 1.86801 * 120.00005 * 162.20541 * 19 17 16 22 22 H 1.48497 * 109.47091 * 94.65965 * 21 19 17 23 23 H 1.48499 * 109.46791 * 214.65985 * 21 19 17 24 24 H 1.48499 * 109.46805 * 334.65809 * 21 19 17 25 25 C 1.40888 * 119.79514 * 359.73926 * 16 15 14 26 26 C 1.36319 * 119.88965 * 359.97438 * 25 16 15 27 27 C 1.52998 * 117.49515 * 111.37697 * 5 3 2 28 28 F 1.39898 * 117.50159 * 359.97438 * 27 5 3 29 29 F 1.39903 * 117.49932 * 214.97348 * 27 5 3 30 30 H 1.08996 * 109.47316 * 300.00086 * 1 2 3 31 31 H 1.08992 * 109.47439 * 60.00587 * 1 2 3 32 32 H 1.09003 * 109.47103 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47367 * 294.98730 * 9 7 5 34 34 H 1.09004 * 109.46700 * 54.98997 * 9 7 5 35 35 H 0.97009 * 119.99893 * 0.02562 * 10 9 7 36 36 H 1.08001 * 119.94782 * 0.02562 * 14 13 11 37 37 H 1.07995 * 120.05540 * 180.22868 * 15 14 13 38 38 H 0.97003 * 120.00347 * 180.02562 * 20 19 17 39 39 H 1.07996 * 120.05515 * 179.97438 * 25 16 15 40 40 H 1.07998 * 119.94328 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0783 0.4886 0.5552 7 6 4.2007 2.6671 -0.0001 8 1 5.1301 2.7974 0.5542 9 6 3.2586 3.8728 -0.0018 10 7 4.0420 5.1048 0.1185 11 6 3.4195 6.3000 0.1391 12 8 2.2076 6.3556 0.0582 13 6 4.2091 7.5417 0.2598 14 6 5.6040 7.4748 0.3586 15 6 6.3377 8.6188 0.4653 16 6 5.6890 9.8693 0.4870 17 6 6.4437 11.0560 0.6034 18 1 6.0455 11.9878 0.2299 19 6 7.7105 11.0253 1.2038 20 7 8.0528 10.0130 1.9553 21 14 8.9086 12.4320 0.9292 22 1 8.7882 13.4089 2.0411 23 1 10.2944 11.9002 0.8852 24 1 8.5954 13.1048 -0.3571 25 6 4.2847 9.9312 0.3927 26 6 3.5600 8.7821 0.2804 27 6 4.2463 1.8056 -1.2631 28 9 3.4235 2.1800 -2.3308 29 9 5.4777 1.2445 -1.6182 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.6936 3.8910 -0.9337 34 1 2.5696 3.7967 0.8394 35 1 5.0089 5.0604 0.1834 36 1 6.1000 6.5155 0.3460 37 1 7.4139 8.5664 0.5378 38 1 8.9290 9.9919 2.3710 39 1 3.7831 10.8875 0.4093 40 1 2.4835 8.8286 0.2076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881824618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:29 Heat of formation + Delta-G solvation = -183.581448 kcal Electronic energy + Delta-G solvation = -28322.973267 eV Core-core repulsion = 23738.889431 eV Total energy + Delta-G solvation = -4584.083836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.99032 -48.65257 -41.87207 -40.77206 -39.05304 -38.46172 -37.16987 -35.66448 -35.18974 -32.11558 -31.29238 -29.56481 -28.60038 -27.08973 -25.48166 -23.69358 -22.91828 -22.58189 -21.86983 -21.12830 -19.61740 -19.34993 -18.81257 -18.47097 -18.07319 -17.56411 -17.37050 -17.21973 -16.85707 -16.46062 -16.01493 -15.73937 -15.54289 -15.23211 -15.07816 -14.87110 -14.77277 -14.54261 -14.46430 -14.29604 -14.10905 -13.87103 -13.65609 -13.46135 -13.18697 -13.04054 -12.83726 -12.63567 -12.43635 -12.35696 -11.90798 -11.79595 -11.73660 -11.36590 -11.21939 -11.10830 -10.73503 -10.11444 -9.56345 -9.39882 -8.78779 -6.47271 0.44410 0.54456 1.16127 1.30731 1.39524 1.43329 1.55783 1.70546 1.90563 2.12174 2.15373 2.19173 2.79139 2.94458 3.10843 3.23633 3.60043 3.70068 3.85600 4.16882 4.25114 4.28987 4.31160 4.33438 4.34254 4.45179 4.55602 4.68028 4.87132 4.93281 5.04217 5.16366 5.19596 5.30886 5.48020 5.59867 5.82687 5.94763 6.00261 6.23692 6.46935 6.54651 6.68331 6.77978 6.89837 7.42570 8.16700 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.002255 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.435296 B =12416.161438 C =13224.035281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.482 3.518 4 O -0.511 6.511 5 C -0.136 4.136 6 H 0.213 0.787 7 C -0.119 4.119 8 H 0.193 0.807 9 C 0.156 3.844 10 N -0.724 5.724 11 C 0.571 3.429 12 O -0.606 6.606 13 C -0.293 4.293 14 C -0.051 4.051 15 C -0.197 4.197 16 C 0.101 3.899 17 C -0.473 4.473 18 H 0.084 0.916 19 C 0.039 3.961 20 N -0.796 5.796 21 Si 0.987 3.013 22 H -0.262 1.262 23 H -0.260 1.260 24 H -0.259 1.259 25 C -0.254 4.254 26 C -0.034 4.034 27 C 0.224 3.776 28 F -0.166 7.166 29 F -0.141 7.141 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.411 0.589 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.298 0.702 39 H 0.103 0.897 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 -20.881 -1.061 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.325 3.675 4 O -0.399 6.399 5 C -0.156 4.156 6 H 0.230 0.770 7 C -0.138 4.138 8 H 0.210 0.790 9 C 0.033 3.967 10 N -0.378 5.378 11 C 0.365 3.635 12 O -0.490 6.490 13 C -0.297 4.297 14 C -0.070 4.070 15 C -0.216 4.216 16 C 0.098 3.902 17 C -0.500 4.500 18 H 0.102 0.898 19 C -0.181 4.181 20 N -0.419 5.419 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.182 1.182 25 C -0.273 4.273 26 C -0.053 4.053 27 C 0.187 3.813 28 F -0.146 7.146 29 F -0.122 7.122 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.249 0.751 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.135 -20.715 -1.013 20.849 hybrid contribution 0.315 0.728 -0.285 0.843 sum -1.820 -19.987 -1.298 20.112 Atomic orbital electron populations 1.23637 0.74037 1.06147 1.02678 1.86451 1.25353 1.31518 1.83307 1.22549 0.90430 0.81884 0.72628 1.90823 1.67373 1.36893 1.44851 1.23510 0.89798 1.02060 1.00195 0.77004 1.24104 1.03364 0.90211 0.96115 0.78952 1.20791 0.92124 0.80919 1.02871 1.45731 1.11074 1.04760 1.76232 1.18442 0.86592 0.84170 0.74318 1.90642 1.16122 1.88155 1.54097 1.19134 0.93853 0.91883 1.24853 1.20745 0.91930 0.98172 0.96155 1.21024 0.99614 0.92101 1.08905 1.18154 0.91610 0.94302 0.86165 1.20101 1.00969 0.95821 1.33098 0.89796 1.26906 0.99638 0.99976 0.91556 1.69750 1.21982 1.30958 1.19259 0.85116 0.76823 0.77437 0.79992 1.18654 1.18433 1.18248 1.20848 0.94047 0.96909 1.15513 1.20505 0.98137 0.92206 0.94474 1.19842 0.79305 1.01895 0.80270 1.93051 1.71274 1.91509 1.58774 1.93105 1.40636 1.85334 1.93087 0.91625 0.92284 0.84306 0.92526 0.90299 0.75063 0.85292 0.86603 0.89105 0.87913 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -5.88 10.57 -51.43 -0.54 -6.42 16 3 C 0.48 9.83 7.35 71.24 0.52 10.36 16 4 O -0.51 -14.50 12.86 21.98 0.28 -14.22 16 5 C -0.14 -1.91 6.29 -11.54 -0.07 -1.98 16 6 H 0.21 1.00 8.14 -2.39 -0.02 0.98 16 7 C -0.12 -2.04 5.83 -10.81 -0.06 -2.10 16 8 H 0.19 1.82 8.04 -2.39 -0.02 1.80 16 9 C 0.16 4.47 4.20 86.38 0.36 4.83 16 10 N -0.72 -23.23 5.50 -466.15 -2.57 -25.80 16 11 C 0.57 24.72 7.76 86.73 0.67 25.39 16 12 O -0.61 -30.56 16.32 -4.00 -0.07 -30.62 16 13 C -0.29 -13.46 5.89 -19.94 -0.12 -13.58 16 14 C -0.05 -2.20 9.47 22.25 0.21 -1.98 16 15 C -0.20 -9.60 8.63 22.47 0.19 -9.40 16 16 C 0.10 5.24 5.57 -21.28 -0.12 5.12 16 17 C -0.47 -23.82 9.04 23.46 0.21 -23.61 16 18 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 19 C 0.04 1.77 5.13 85.35 0.44 2.21 16 20 N -0.80 -37.40 10.97 21.87 0.24 -37.16 16 21 Si 0.99 34.45 29.60 68.60 2.03 36.48 16 22 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 23 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 24 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 25 C -0.25 -12.74 9.73 22.47 0.22 -12.53 16 26 C -0.03 -1.66 9.52 22.25 0.21 -1.45 16 27 C 0.22 4.17 5.13 30.58 0.16 4.32 16 28 F -0.17 -4.26 16.00 44.97 0.72 -3.54 16 29 F -0.14 -2.46 17.60 44.97 0.79 -1.67 16 30 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 32 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.95 6.48 -2.39 -0.02 1.94 16 34 H 0.08 2.53 6.92 -2.39 -0.02 2.51 16 35 H 0.41 10.53 6.40 -92.70 -0.59 9.94 16 36 H 0.13 4.33 6.37 -2.91 -0.02 4.31 16 37 H 0.12 5.67 6.17 -2.91 -0.02 5.65 16 38 H 0.30 12.34 8.29 -92.71 -0.77 11.57 16 39 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.10 4.80 7.63 -2.91 -0.02 4.78 16 Total: -1.00 -70.75 355.70 5.44 -65.31 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.52 Total: 30.48 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.03 Total: -12.85 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -2.33 Total: -62.95 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.33 Total: -51.26 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.51 Total: -5.20 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Total: -70.75 5.44 -65.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881824618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.273 kcal (2) G-P(sol) polarization free energy of solvation -70.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds