Wall clock time and date at job start Tue Mar 31 2020 22:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99847 * 2 1 4 4 H 1.48500 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47484 * 300.00263 * 3 2 1 6 6 H 1.48502 * 109.47483 * 60.00162 * 3 2 1 7 7 C 1.38943 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00113 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00449 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00353 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00128 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47196 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99781 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00300 * 354.90436 * 14 13 12 16 16 N 1.34781 * 119.99704 * 174.90645 * 14 13 12 17 17 C 1.47238 * 121.34985 * 184.91843 * 16 14 13 18 18 C 1.52786 * 107.89194 * 115.63568 * 17 16 14 19 19 C 1.50612 * 110.86505 * 47.42938 * 18 17 16 20 20 C 1.38995 * 117.56579 * 160.30529 * 19 18 17 21 21 C 1.38047 * 120.60469 * 179.58536 * 20 19 18 22 22 F 1.35106 * 120.12649 * 179.97438 * 21 20 19 23 23 C 1.38702 * 119.75485 * 359.97438 * 21 20 19 24 24 F 1.35092 * 120.18196 * 180.15323 * 23 21 20 25 25 C 1.38112 * 119.63397 * 0.17145 * 23 21 20 26 26 C 1.37684 * 122.86201 * 340.23315 * 19 18 17 27 27 C 1.46681 * 121.35127 * 4.62734 * 16 14 13 28 28 H 0.96998 * 120.00111 * 359.97438 * 1 2 3 29 29 H 0.97009 * 120.00027 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47125 * 300.00270 * 12 10 9 31 31 H 1.09001 * 109.47295 * 59.99560 * 12 10 9 32 32 H 0.96996 * 120.00227 * 359.97438 * 13 12 10 33 33 H 1.09000 * 109.78015 * 235.23512 * 17 16 14 34 34 H 1.08997 * 109.77577 * 356.04104 * 17 16 14 35 35 H 1.09000 * 109.20068 * 167.79084 * 18 17 16 36 36 H 1.09005 * 109.19859 * 287.12242 * 18 17 16 37 37 H 1.08000 * 119.69514 * 359.58603 * 20 19 18 38 38 H 1.08003 * 119.73153 * 180.02562 * 25 23 21 39 39 H 1.09002 * 109.43578 * 344.45016 * 27 16 14 40 40 H 1.09002 * 109.43671 * 104.31936 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0030 12 6 1.2438 -4.8630 -0.0022 13 7 2.1958 -5.9764 -0.0039 14 6 1.7465 -7.2471 -0.0042 15 8 0.5551 -7.4708 0.0905 16 7 2.6179 -8.2700 -0.1094 17 6 2.1542 -9.6630 -0.2204 18 6 2.5778 -10.1910 -1.5901 19 6 4.0222 -9.8663 -1.8670 20 6 4.6732 -10.6114 -2.8432 21 6 5.9948 -10.3610 -3.1536 22 9 6.6184 -11.0915 -4.1037 23 6 6.6803 -9.3566 -2.4863 24 9 7.9729 -9.1022 -2.7853 25 6 6.0341 -8.6183 -1.5142 26 6 4.7061 -8.8747 -1.2002 27 6 4.0665 -8.0399 -0.1243 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 0.0002 30 1 0.6175 -4.9213 0.8880 31 1 0.6168 -4.9201 -0.8919 32 1 3.1495 -5.7992 -0.0049 33 1 2.6095 -10.2670 0.5645 34 1 1.0685 -9.6985 -0.1311 35 1 2.4422 -11.2722 -1.6151 36 1 1.9546 -9.7338 -2.3589 37 1 4.1402 -11.3933 -3.3636 38 1 6.5662 -7.8356 -0.9939 39 1 4.2644 -6.9857 -0.3181 40 1 4.4875 -8.3155 0.8426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883695664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:54 Heat of formation + Delta-G solvation = -122.075357 kcal Electronic energy + Delta-G solvation = -28368.719343 eV Core-core repulsion = 23819.595363 eV Total energy + Delta-G solvation = -4549.123980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.75797 -48.84144 -40.87479 -39.42751 -38.23470 -36.08063 -34.62274 -33.91253 -33.15398 -31.46645 -31.31366 -29.75647 -27.65641 -25.92023 -24.65331 -23.86414 -23.24931 -21.53706 -19.76110 -19.54113 -18.58905 -18.10447 -18.01839 -17.31642 -16.95778 -16.63095 -16.26045 -15.80559 -15.57193 -15.25455 -14.99037 -14.89414 -14.75613 -14.50696 -14.41421 -14.21842 -13.99761 -13.86566 -13.61416 -13.52670 -12.95494 -12.81625 -12.36729 -12.11749 -11.95553 -11.80081 -11.65814 -11.61382 -11.26096 -11.16412 -10.42981 -10.35375 -10.13659 -9.67474 -9.40878 -9.07581 -8.86617 -8.66795 -8.62741 -8.12914 -6.54077 -3.96138 0.50107 0.56416 2.49583 2.87041 3.08281 3.21084 3.21791 3.27477 3.41995 3.71393 3.82847 3.96892 4.04510 4.10291 4.13806 4.41144 4.59174 4.77995 4.84991 4.89399 4.92622 5.08513 5.14735 5.20973 5.31122 5.37231 5.44607 5.47345 5.61939 5.70633 5.85618 5.95620 5.96278 6.03596 6.23350 6.34265 6.65405 6.88855 7.43819 7.89682 8.01674 8.41817 8.63645 9.02042 9.36484 9.83919 10.62833 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002408 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.752400 B =11625.436856 C =13119.179835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.724 5.724 14 C 0.714 3.286 15 O -0.590 6.590 16 N -0.633 5.633 17 C 0.130 3.870 18 C -0.099 4.099 19 C -0.046 4.046 20 C -0.127 4.127 21 C 0.069 3.931 22 F -0.129 7.129 23 C 0.067 3.933 24 F -0.128 7.128 25 C -0.117 4.117 26 C -0.073 4.073 27 C 0.150 3.850 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.406 0.594 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.101 0.899 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -21.896 -2.533 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.415 3.585 15 O -0.468 6.468 16 N -0.371 5.371 17 C 0.007 3.993 18 C -0.137 4.137 19 C -0.047 4.047 20 C -0.146 4.146 21 C 0.049 3.951 22 F -0.108 7.108 23 C 0.047 3.953 24 F -0.106 7.106 25 C -0.136 4.136 26 C -0.074 4.074 27 C 0.026 3.974 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.119 0.881 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.814 -21.832 -2.516 23.009 hybrid contribution 0.792 0.887 -0.413 1.259 sum 7.605 -20.945 -2.929 22.475 Atomic orbital electron populations 1.69621 1.06019 1.28462 1.49308 1.25328 0.95669 0.99957 0.96772 0.85759 0.79686 0.80811 0.77846 1.19121 1.20609 1.20597 1.19772 0.93479 0.81959 1.48178 0.87616 1.41796 1.09515 1.04462 1.62517 1.19735 0.88280 0.84988 0.85619 1.90483 1.13752 1.86855 1.57498 1.20822 0.91219 0.84853 1.03260 1.44941 1.11342 1.03349 1.78623 1.15635 0.84627 0.80380 0.77826 1.90907 1.13951 1.83752 1.58228 1.47106 1.04887 1.06346 1.78789 1.21454 1.02283 0.80080 0.95482 1.20939 0.91307 1.02191 0.99281 1.19417 0.96328 0.94265 0.94693 1.21094 0.92160 1.01967 0.99397 1.17580 0.92154 0.93796 0.91603 1.91537 1.82370 1.75481 1.61414 1.17505 0.80062 0.98255 0.99474 1.91543 1.33375 1.93345 1.92338 1.20999 0.94746 1.00483 0.97377 1.19628 0.93047 0.96738 0.98002 1.20371 0.80540 0.99738 0.96734 0.91610 0.76999 0.89784 0.90003 0.75458 0.90784 0.87704 0.88925 0.89238 0.83596 0.83058 0.88113 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 13.05 55.50 0.72 -22.84 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.13 9.68 -14.94 -0.14 -8.27 16 8 H 0.11 2.94 7.16 -52.48 -0.38 2.57 16 9 N -0.55 -13.30 5.29 -10.97 -0.06 -13.35 16 10 C 0.43 9.53 7.85 -10.98 -0.09 9.44 16 11 O -0.60 -14.81 15.24 5.55 0.08 -14.72 16 12 C 0.13 2.27 6.16 -5.20 -0.03 2.23 16 13 N -0.72 -11.62 5.44 -66.41 -0.36 -11.99 16 14 C 0.71 10.90 8.32 -86.91 -0.72 10.18 16 15 O -0.59 -10.75 15.84 5.29 0.08 -10.66 16 16 N -0.63 -7.13 2.94 -180.33 -0.53 -7.66 16 17 C 0.13 1.12 6.44 -3.75 -0.02 1.09 16 18 C -0.10 -0.70 5.86 -28.04 -0.16 -0.86 16 19 C -0.05 -0.38 5.77 -104.59 -0.60 -0.98 16 20 C -0.13 -1.01 9.56 -39.37 -0.38 -1.39 16 21 C 0.07 0.68 7.30 -39.48 -0.29 0.39 16 22 F -0.13 -1.40 17.19 2.25 0.04 -1.36 16 23 C 0.07 0.68 7.31 -39.46 -0.29 0.39 16 24 F -0.13 -1.45 17.19 2.25 0.04 -1.41 16 25 C -0.12 -1.03 9.60 -39.40 -0.38 -1.40 16 26 C -0.07 -0.64 5.81 -104.72 -0.61 -1.25 16 27 C 0.15 1.36 6.13 -5.22 -0.03 1.33 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.40 9.25 7.90 -40.82 -0.32 8.93 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.41 6.31 5.03 -40.82 -0.21 6.11 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 1.02 7.07 -51.93 -0.37 0.65 16 35 H 0.09 0.41 8.11 -51.93 -0.42 -0.01 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.15 0.84 8.05 -52.49 -0.42 0.41 16 38 H 0.15 1.08 8.05 -52.48 -0.42 0.65 16 39 H 0.10 0.98 5.81 -51.93 -0.30 0.68 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -31.90 350.56 -7.65 -39.55 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.09 Total: 12.45 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: -3.85 Total: 11.47 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.22 Total: -55.84 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: 0.17 Total: -25.39 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.77 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.90 -7.65 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.524 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds