Wall clock time and date at job start Tue Mar 31 2020 22:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99847 * 2 1 4 4 H 1.48500 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47484 * 300.00263 * 3 2 1 6 6 H 1.48502 * 109.47483 * 60.00162 * 3 2 1 7 7 C 1.38943 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00113 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00449 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00353 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00128 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47196 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99781 * 179.97438 * 13 12 10 15 15 O 1.21588 * 120.00300 * 354.90436 * 14 13 12 16 16 N 1.34781 * 119.99704 * 174.90645 * 14 13 12 17 17 C 1.47238 * 121.34985 * 184.91843 * 16 14 13 18 18 C 1.52786 * 107.89194 * 115.63568 * 17 16 14 19 19 C 1.50612 * 110.86505 * 47.42938 * 18 17 16 20 20 C 1.38995 * 117.56579 * 160.30529 * 19 18 17 21 21 C 1.38047 * 120.60469 * 179.58536 * 20 19 18 22 22 F 1.35106 * 120.12649 * 179.97438 * 21 20 19 23 23 C 1.38702 * 119.75485 * 359.97438 * 21 20 19 24 24 F 1.35092 * 120.18196 * 180.15323 * 23 21 20 25 25 C 1.38112 * 119.63397 * 0.17145 * 23 21 20 26 26 C 1.37684 * 122.86201 * 340.23315 * 19 18 17 27 27 C 1.46681 * 121.35127 * 4.62734 * 16 14 13 28 28 H 0.96998 * 120.00111 * 359.97438 * 1 2 3 29 29 H 0.97009 * 120.00027 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47125 * 300.00270 * 12 10 9 31 31 H 1.09001 * 109.47295 * 59.99560 * 12 10 9 32 32 H 0.96996 * 120.00227 * 359.97438 * 13 12 10 33 33 H 1.09000 * 109.78015 * 235.23512 * 17 16 14 34 34 H 1.08997 * 109.77577 * 356.04104 * 17 16 14 35 35 H 1.09000 * 109.20068 * 167.79084 * 18 17 16 36 36 H 1.09005 * 109.19859 * 287.12242 * 18 17 16 37 37 H 1.08000 * 119.69514 * 359.58603 * 20 19 18 38 38 H 1.08003 * 119.73153 * 180.02562 * 25 23 21 39 39 H 1.09002 * 109.43578 * 344.45016 * 27 16 14 40 40 H 1.09002 * 109.43671 * 104.31936 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0030 12 6 1.2438 -4.8630 -0.0022 13 7 2.1958 -5.9764 -0.0039 14 6 1.7465 -7.2471 -0.0042 15 8 0.5551 -7.4708 0.0905 16 7 2.6179 -8.2700 -0.1094 17 6 2.1542 -9.6630 -0.2204 18 6 2.5778 -10.1910 -1.5901 19 6 4.0222 -9.8663 -1.8670 20 6 4.6732 -10.6114 -2.8432 21 6 5.9948 -10.3610 -3.1536 22 9 6.6184 -11.0915 -4.1037 23 6 6.6803 -9.3566 -2.4863 24 9 7.9729 -9.1022 -2.7853 25 6 6.0341 -8.6183 -1.5142 26 6 4.7061 -8.8747 -1.2002 27 6 4.0665 -8.0399 -0.1243 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 0.0002 30 1 0.6175 -4.9213 0.8880 31 1 0.6168 -4.9201 -0.8919 32 1 3.1495 -5.7992 -0.0049 33 1 2.6095 -10.2670 0.5645 34 1 1.0685 -9.6985 -0.1311 35 1 2.4422 -11.2722 -1.6151 36 1 1.9546 -9.7338 -2.3589 37 1 4.1402 -11.3933 -3.3636 38 1 6.5662 -7.8356 -0.9939 39 1 4.2644 -6.9857 -0.3181 40 1 4.4875 -8.3155 0.8426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883695664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:53 Heat of formation + Delta-G solvation = -142.617494 kcal Electronic energy + Delta-G solvation = -28369.610117 eV Core-core repulsion = 23819.595363 eV Total energy + Delta-G solvation = -4550.014754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.54515 -49.63805 -41.80020 -40.55283 -39.85252 -37.00164 -36.25899 -35.43781 -33.98245 -33.34798 -32.17920 -30.52256 -29.07847 -26.94163 -26.19708 -24.73203 -23.92584 -22.45645 -21.37892 -20.68737 -20.08515 -19.45380 -18.89271 -18.12332 -17.82098 -17.55340 -17.39676 -17.09963 -16.87003 -16.53652 -16.10532 -16.06643 -15.93451 -15.52490 -15.41706 -15.31268 -15.07818 -14.97166 -14.83182 -14.31817 -14.01705 -13.82058 -13.58032 -13.54093 -13.33546 -12.94372 -12.90415 -12.53610 -12.43187 -12.27542 -12.10727 -11.93257 -11.56743 -11.38775 -10.54040 -10.34044 -10.09047 -10.04513 -9.64420 -9.55497 -8.50105 -5.99890 -0.21418 -0.09498 1.35874 1.42227 1.47337 1.58473 1.90812 2.06561 2.18889 2.28312 2.69521 2.79911 3.15993 3.17543 3.23280 3.35704 3.44904 3.76721 3.93887 4.11350 4.20089 4.23079 4.28794 4.44308 4.45177 4.48751 4.58655 4.68335 4.74861 4.78078 4.83182 4.93860 5.10509 5.28796 5.30494 5.40065 5.42271 5.65448 5.85914 5.93713 6.49225 6.85157 7.05040 7.41412 7.49164 7.95914 8.67066 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002408 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.752400 B =11625.436856 C =13119.179835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.140 3.860 13 N -0.726 5.726 14 C 0.713 3.287 15 O -0.622 6.622 16 N -0.627 5.627 17 C 0.124 3.876 18 C -0.092 4.092 19 C -0.046 4.046 20 C -0.117 4.117 21 C 0.054 3.946 22 F -0.139 7.139 23 C 0.047 3.953 24 F -0.140 7.140 25 C -0.115 4.115 26 C -0.076 4.076 27 C 0.149 3.851 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.408 0.592 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.172 0.828 38 H 0.164 0.836 39 H 0.093 0.907 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.923 -22.952 -2.399 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.012 3.988 13 N -0.386 5.386 14 C 0.414 3.586 15 O -0.503 6.503 16 N -0.364 5.364 17 C 0.003 3.997 18 C -0.130 4.130 19 C -0.047 4.047 20 C -0.135 4.135 21 C 0.034 3.966 22 F -0.117 7.117 23 C 0.027 3.973 24 F -0.119 7.119 25 C -0.134 4.134 26 C -0.077 4.077 27 C 0.026 3.974 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.248 0.752 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.145 0.855 36 H 0.101 0.899 37 H 0.189 0.811 38 H 0.182 0.818 39 H 0.111 0.889 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.771 -22.935 -2.386 24.032 hybrid contribution 0.826 1.112 -0.448 1.455 sum 7.596 -21.823 -2.833 23.281 Atomic orbital electron populations 1.69684 1.06984 1.29528 1.49471 1.26105 0.96514 1.02638 0.95893 0.84830 0.78183 0.76853 0.78245 1.19390 1.19771 1.19686 1.19756 0.92941 0.83509 1.50148 0.89548 1.41843 1.09615 1.04596 1.63480 1.20418 0.88124 0.85891 0.83431 1.90461 1.15146 1.87555 1.57991 1.20606 0.91002 0.83039 1.04164 1.44883 1.11077 1.03419 1.79203 1.15715 0.84661 0.80552 0.77643 1.90885 1.15466 1.84206 1.59766 1.47174 1.05352 1.06476 1.77368 1.21717 1.01917 0.78722 0.97394 1.20944 0.90030 1.04174 0.97848 1.19607 0.96870 0.93835 0.94370 1.21307 0.91289 1.02060 0.98888 1.17824 0.92958 0.93996 0.91789 1.91510 1.82683 1.75718 1.61838 1.17746 0.79840 0.99195 1.00483 1.91505 1.34274 1.93543 1.92561 1.21102 0.94860 1.00444 0.96966 1.19635 0.93017 0.96948 0.98127 1.20500 0.79261 0.99489 0.98156 0.91111 0.76686 0.88854 0.89004 0.75159 0.88288 0.88857 0.85539 0.89946 0.81070 0.81847 0.88938 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.15 13.05 21.66 0.28 -47.86 16 2 C -0.01 -0.56 5.50 84.92 0.47 -0.10 16 3 Si 1.00 41.28 29.55 68.60 2.03 43.31 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.33 -18.09 9.68 84.04 0.81 -17.28 16 8 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -27.49 5.29 -306.99 -1.62 -29.11 16 10 C 0.43 19.42 7.85 87.66 0.69 20.10 16 11 O -0.62 -31.07 15.24 -3.05 -0.05 -31.12 16 12 C 0.14 4.95 6.16 85.63 0.53 5.48 16 13 N -0.73 -22.77 5.44 -482.29 -2.62 -25.39 16 14 C 0.71 20.96 8.32 179.05 1.49 22.45 16 15 O -0.62 -22.13 15.84 -3.99 -0.06 -22.19 16 16 N -0.63 -12.94 2.94 -842.70 -2.48 -15.41 16 17 C 0.12 1.82 6.44 86.17 0.56 2.37 16 18 C -0.09 -1.01 5.86 29.75 0.17 -0.83 16 19 C -0.05 -0.64 5.77 -19.84 -0.11 -0.75 16 20 C -0.12 -1.57 9.56 22.41 0.21 -1.36 16 21 C 0.05 1.00 7.30 22.34 0.16 1.17 16 22 F -0.14 -2.91 17.19 44.97 0.77 -2.13 16 23 C 0.05 0.93 7.31 22.35 0.16 1.10 16 24 F -0.14 -3.21 17.19 44.97 0.77 -2.43 16 25 C -0.11 -1.88 9.60 22.39 0.21 -1.66 16 26 C -0.08 -1.18 5.81 -19.93 -0.12 -1.30 16 27 C 0.15 2.42 6.13 85.52 0.52 2.94 16 28 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 29 H 0.40 18.85 7.90 -92.70 -0.73 18.12 16 30 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 31 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.41 12.45 5.03 -92.71 -0.47 11.99 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.65 7.07 -2.39 -0.02 1.63 16 35 H 0.13 0.58 8.11 -2.39 -0.02 0.56 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.17 1.38 8.05 -2.91 -0.02 1.35 16 38 H 0.16 2.15 8.05 -2.91 -0.02 2.13 16 39 H 0.09 1.69 5.81 -2.39 -0.01 1.68 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -68.68 350.56 2.73 -65.95 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.06 Total: 34.07 kcal Atomic # 6 Polarization: 26.57 SS G_CDS: 5.77 Total: 32.34 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -6.44 Total: -117.78 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.11 Total: -53.31 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.55 Total: -4.57 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -68.68 2.73 -65.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883695664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.669 kcal (2) G-P(sol) polarization free energy of solvation -68.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds