Wall clock time and date at job start Tue Mar 31 2020 22:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00463 * 2 1 4 4 H 1.48501 * 109.47204 * 89.99702 * 3 2 1 5 5 H 1.48490 * 109.47216 * 209.99781 * 3 2 1 6 6 H 1.48507 * 109.46884 * 330.00250 * 3 2 1 7 7 C 1.40035 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99878 * 15.48034 * 7 2 1 9 9 C 1.41331 * 120.00016 * 195.47910 * 7 2 1 10 10 C 1.40629 * 119.78517 * 187.26755 * 9 7 2 11 11 C 1.38306 * 119.13450 * 179.97438 * 10 9 7 12 12 C 1.38701 * 118.67100 * 0.02562 * 11 10 9 13 13 C 1.39661 * 119.49339 * 359.97438 * 12 11 10 14 14 N 1.39117 * 119.57866 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99902 * 341.83460 * 14 13 12 16 16 O 1.21356 * 119.99596 * 3.41668 * 15 14 13 17 17 C 1.49367 * 119.99809 * 183.42137 * 15 14 13 18 18 O 1.21354 * 120.00113 * 5.03870 * 17 15 14 19 19 N 1.34772 * 119.99927 * 185.03451 * 17 15 14 20 20 C 1.46501 * 120.00029 * 184.06142 * 19 17 15 21 21 C 1.52998 * 109.47159 * 90.00180 * 20 19 17 22 22 F 1.39896 * 109.47400 * 300.00307 * 21 20 19 23 23 F 1.39911 * 109.47071 * 59.99991 * 21 20 19 24 24 C 1.46500 * 120.00024 * 4.06372 * 19 17 15 25 25 C 1.53004 * 117.50070 * 181.18167 * 24 19 17 26 26 C 1.52998 * 117.50250 * 112.55538 * 24 19 17 27 27 N 1.31960 * 120.84313 * 359.73310 * 13 12 11 28 28 H 0.96996 * 120.00346 * 174.94433 * 1 2 3 29 29 H 1.07998 * 120.43326 * 359.97438 * 10 9 7 30 30 H 1.07998 * 120.66640 * 180.02562 * 11 10 9 31 31 H 1.07995 * 120.25059 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00253 * 161.82746 * 14 13 12 33 33 H 1.09009 * 109.46764 * 209.99838 * 20 19 17 34 34 H 1.08993 * 109.47155 * 329.99763 * 20 19 17 35 35 H 1.08994 * 109.47163 * 179.97438 * 21 20 19 36 36 H 1.09004 * 115.55313 * 326.88734 * 24 19 17 37 37 H 1.09003 * 117.49874 * 359.97438 * 25 24 19 38 38 H 1.08999 * 117.49726 * 145.01819 * 25 24 19 39 39 H 1.08993 * 117.50201 * 214.98087 * 26 24 19 40 40 H 1.09005 * 117.49573 * 359.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4891 2.0464 1.4001 5 1 3.5391 1.4400 -0.6999 6 1 1.4390 2.6527 -0.7000 7 6 2.0075 -1.2128 0.0005 8 1 1.4969 -2.1312 -0.2487 9 6 3.3824 -1.2349 0.3272 10 6 4.1166 -2.4251 0.1788 11 6 5.4614 -2.4315 0.5020 12 6 6.0404 -1.2586 0.9634 13 6 5.2580 -0.1086 1.0891 14 7 5.8368 1.0686 1.5523 15 6 7.0108 1.0277 2.2132 16 8 7.5935 -0.0280 2.3501 17 6 7.5944 2.2816 2.7771 18 8 6.9697 3.3205 2.7208 19 7 8.8148 2.2593 3.3485 20 6 9.3499 3.4678 3.9805 21 6 8.9418 3.4958 5.4548 22 9 7.5463 3.4973 5.5524 23 9 9.4533 2.3656 6.1018 24 6 9.6063 1.0266 3.3376 25 6 10.9720 1.0577 4.0268 26 6 10.8864 1.0163 2.4997 27 7 3.9777 -0.1232 0.7697 28 1 -0.4850 -0.8367 -0.0740 29 1 3.6366 -3.3225 -0.1827 30 1 6.0488 -3.3316 0.3971 31 1 7.0883 -1.2349 1.2235 32 1 5.3957 1.9188 1.3995 33 1 10.4374 3.4665 3.9045 34 1 8.9516 4.3482 3.4764 35 1 9.3403 4.3946 5.9251 36 1 9.0346 0.1002 3.3944 37 1 11.2818 1.9955 4.4879 38 1 11.2989 0.1518 4.5373 39 1 11.1571 0.0832 2.0056 40 1 11.1395 1.9266 1.9561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889905298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:38 Heat of formation + Delta-G solvation = -104.750022 kcal Electronic energy + Delta-G solvation = -29807.416100 eV Core-core repulsion = 25259.043403 eV Total energy + Delta-G solvation = -4548.372698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.87694 -47.91278 -42.43785 -40.89261 -39.57949 -38.76668 -36.44484 -35.46269 -34.74353 -33.00500 -31.62434 -31.03884 -27.59691 -26.53156 -24.58533 -23.90017 -23.58222 -23.18543 -22.28450 -21.21255 -20.28947 -19.36123 -18.80430 -18.41457 -18.31021 -17.84403 -17.52531 -17.23586 -16.92163 -16.62811 -16.40815 -16.06715 -15.66725 -15.36292 -15.11576 -14.81440 -14.76657 -14.51939 -14.31226 -14.27552 -14.12364 -13.73848 -13.58577 -13.37650 -13.00738 -12.89191 -12.58858 -12.28922 -12.23320 -12.14677 -11.90566 -11.79352 -11.77150 -11.57489 -11.09938 -10.49787 -10.23664 -9.82106 -9.80283 -9.45405 -9.22635 -6.82495 -0.14244 0.68615 0.79504 0.89888 1.52053 1.62530 1.87661 1.92754 2.06511 2.37345 2.59861 2.81888 2.90328 2.96315 3.37468 3.50570 3.52570 3.69191 3.88726 4.03950 4.06268 4.12391 4.26877 4.31852 4.41777 4.59027 4.62994 4.67963 4.79988 4.97602 5.00389 5.11337 5.24109 5.29999 5.33220 5.38417 5.63062 5.71490 5.82335 5.89141 6.09187 6.35230 6.40835 6.61402 6.69179 7.47378 7.91870 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003483 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.780925 B = 8037.416584 C = 9109.591579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.023 3.977 3 Si 1.169 2.831 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.320 1.320 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.258 3.742 10 C -0.284 4.284 11 C -0.028 4.028 12 C -0.305 4.305 13 C 0.361 3.639 14 N -0.627 5.627 15 C 0.514 3.486 16 O -0.487 6.487 17 C 0.520 3.480 18 O -0.523 6.523 19 N -0.548 5.548 20 C 0.052 3.948 21 C 0.234 3.766 22 F -0.225 7.225 23 F -0.209 7.209 24 C 0.019 3.981 25 C -0.156 4.156 26 C -0.177 4.177 27 N -0.611 5.611 28 H 0.283 0.717 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.168 0.832 32 H 0.419 0.581 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.171 0.829 36 H 0.149 0.851 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.794 7.531 8.674 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.195 4.195 3 Si 1.000 3.000 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.252 1.252 7 C -0.543 4.543 8 H 0.091 0.909 9 C 0.133 3.867 10 C -0.307 4.307 11 C -0.052 4.052 12 C -0.329 4.329 13 C 0.131 3.869 14 N -0.272 5.272 15 C 0.296 3.704 16 O -0.362 6.362 17 C 0.302 3.698 18 O -0.399 6.399 19 N -0.280 5.280 20 C -0.070 4.070 21 C 0.180 3.820 22 F -0.207 7.207 23 F -0.191 7.191 24 C -0.083 4.083 25 C -0.194 4.194 26 C -0.215 4.215 27 N -0.336 5.336 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.168 0.832 31 H 0.185 0.815 32 H 0.257 0.743 33 H 0.171 0.829 34 H 0.143 0.857 35 H 0.188 0.812 36 H 0.166 0.834 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 25.083 9.600 8.941 28.307 hybrid contribution -0.718 -2.535 -0.247 2.646 sum 24.365 7.065 8.694 26.817 Atomic orbital electron populations 1.70633 1.08519 1.33035 1.32591 1.28316 0.95485 1.07568 0.88102 0.81785 0.72090 0.68566 0.77517 1.21578 1.20734 1.25174 1.20689 0.93970 0.96729 1.42918 0.90866 1.18385 0.93020 0.87135 0.88192 1.21861 0.95940 0.98951 1.13901 1.21404 0.93751 0.97844 0.92164 1.22275 1.02840 0.92565 1.15218 1.18420 0.89044 0.86053 0.93374 1.42986 1.21684 1.09748 1.52804 1.20272 0.81015 0.90313 0.78758 1.90419 1.59170 1.31137 1.55475 1.19619 0.82733 0.87684 0.79753 1.90790 1.59983 1.32073 1.57071 1.47110 1.14750 1.12751 1.53354 1.23195 1.04143 0.88949 0.90740 1.23071 0.74965 0.89412 0.94592 1.93002 1.33420 1.97164 1.97119 1.92990 1.86429 1.56222 1.83424 1.22942 0.88350 0.88127 1.08914 1.23489 0.95549 1.05391 0.94936 1.23463 0.98902 1.04673 0.94454 1.66103 1.10198 1.30819 1.26503 0.90552 0.86382 0.83179 0.81540 0.74341 0.82856 0.85740 0.81244 0.83424 0.86519 0.86844 0.87440 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.39 13.65 21.84 0.30 -46.09 16 2 C 0.02 1.31 5.51 85.29 0.47 1.78 16 3 Si 1.17 57.99 25.96 68.60 1.78 59.77 16 4 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 5 H -0.28 -13.70 6.45 99.48 0.64 -13.06 16 6 H -0.32 -15.28 7.11 99.48 0.71 -14.58 16 7 C -0.51 -28.62 9.51 23.47 0.22 -28.39 16 8 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 9 C 0.26 13.64 6.31 40.21 0.25 13.89 16 10 C -0.28 -13.09 9.83 22.87 0.22 -12.86 16 11 C -0.03 -1.10 10.15 22.40 0.23 -0.87 16 12 C -0.31 -12.61 8.94 22.72 0.20 -12.41 16 13 C 0.36 16.40 7.53 133.28 1.00 17.40 16 14 N -0.63 -24.52 5.39 -309.72 -1.67 -26.19 16 15 C 0.51 17.33 7.69 87.24 0.67 18.00 16 16 O -0.49 -16.30 9.67 -3.27 -0.03 -16.33 16 17 C 0.52 15.07 7.27 87.24 0.63 15.70 16 18 O -0.52 -16.92 15.67 -3.26 -0.05 -16.97 16 19 N -0.55 -11.45 2.72 -799.50 -2.17 -13.63 16 20 C 0.05 0.64 5.26 86.38 0.45 1.10 16 21 C 0.23 3.18 5.60 71.98 0.40 3.58 16 22 F -0.23 -5.56 16.44 44.97 0.74 -4.82 16 23 F -0.21 -3.56 15.34 44.97 0.69 -2.87 16 24 C 0.02 0.37 5.24 44.99 0.24 0.60 16 25 C -0.16 -1.79 8.64 30.60 0.26 -1.52 16 26 C -0.18 -2.33 10.39 30.60 0.32 -2.01 16 27 N -0.61 -31.39 4.90 -186.44 -0.91 -32.30 16 28 H 0.28 15.36 8.73 -92.71 -0.81 14.55 16 29 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 30 H 0.15 4.68 8.06 -2.91 -0.02 4.65 16 31 H 0.17 6.31 4.99 -23.88 -0.12 6.19 16 32 H 0.42 16.04 8.31 -92.71 -0.77 15.27 16 33 H 0.15 0.66 6.14 -2.38 -0.01 0.64 16 34 H 0.12 1.52 7.37 -2.39 -0.02 1.50 16 35 H 0.17 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.15 3.63 5.21 -4.43 -0.02 3.61 16 37 H 0.12 0.86 5.70 -2.39 -0.01 0.84 16 38 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -70.40 341.49 4.39 -66.01 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.14 Total: 19.43 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 5.59 Total: 13.99 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.46 Total: -118.21 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.08 Total: -33.30 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 1.43 Total: -7.69 kcal Atomic # 14 Polarization: 57.99 SS G_CDS: 1.78 Total: 59.77 kcal Total: -70.40 4.39 -66.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889905298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.742 kcal (2) G-P(sol) polarization free energy of solvation -70.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds