Wall clock time and date at job start Tue Mar 31 2020 22:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86802 * 120.00337 * 2 1 4 4 H 1.48496 * 109.47293 * 239.99534 * 3 2 1 5 5 H 1.48501 * 109.46979 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47131 * 119.99555 * 3 2 1 7 7 C 1.40036 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00351 * 179.97438 * 7 2 1 9 9 C 1.41343 * 119.99592 * 0.02562 * 7 2 1 10 10 C 1.40630 * 119.78199 * 179.97438 * 9 7 2 11 11 C 1.38306 * 119.13217 * 180.02562 * 10 9 7 12 12 C 1.38696 * 118.66998 * 359.73223 * 11 10 9 13 13 C 1.39671 * 119.49549 * 0.55537 * 12 11 10 14 14 N 1.39115 * 119.58004 * 179.70371 * 13 12 11 15 15 C 1.34771 * 119.99850 * 176.02587 * 14 13 12 16 16 O 1.21355 * 120.00223 * 4.57974 * 15 14 13 17 17 C 1.49375 * 119.99787 * 184.57936 * 15 14 13 18 18 O 1.21359 * 119.99736 * 353.53516 * 17 15 14 19 19 N 1.34773 * 119.99787 * 173.25854 * 17 15 14 20 20 C 1.46933 * 120.63157 * 353.19000 * 19 17 15 21 21 C 1.53625 * 108.53912 * 126.37009 * 20 19 17 22 22 C 1.53040 * 109.24304 * 54.85705 * 21 20 19 23 23 F 1.39903 * 109.45920 * 178.48782 * 22 21 20 24 24 F 1.39896 * 109.44731 * 58.52500 * 22 21 20 25 25 C 1.53032 * 109.53762 * 298.51025 * 22 21 20 26 26 C 1.46932 * 120.63097 * 173.47200 * 19 17 15 27 27 N 1.31959 * 120.83929 * 359.43350 * 13 12 11 28 28 H 0.97008 * 119.99834 * 0.02562 * 1 2 3 29 29 H 1.07992 * 120.43434 * 359.97438 * 10 9 7 30 30 H 1.07999 * 120.66451 * 180.02562 * 11 10 9 31 31 H 1.08002 * 120.25331 * 180.26450 * 12 11 10 32 32 H 0.96998 * 120.00072 * 356.02856 * 14 13 12 33 33 H 1.08998 * 109.58692 * 246.20122 * 20 19 17 34 34 H 1.08999 * 109.58203 * 6.63118 * 20 19 17 35 35 H 1.09002 * 109.63805 * 294.86347 * 21 20 19 36 36 H 1.09001 * 109.45838 * 174.74421 * 21 20 19 37 37 H 1.09000 * 109.50200 * 301.41150 * 25 22 21 38 38 H 1.09001 * 109.52313 * 181.33594 * 25 22 21 39 39 H 1.08998 * 109.58208 * 353.37644 * 26 19 17 40 40 H 1.09001 * 109.58259 * 113.65616 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6963 -1.2124 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6964 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0001 9 6 1.3008 -2.4368 0.0005 10 6 2.0085 -3.6520 0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0828 -4.7938 0.0052 13 6 -0.7280 -3.5551 -0.0010 14 7 -2.1182 -3.5050 -0.0021 15 6 -2.7497 -2.3167 0.0728 16 8 -2.1083 -1.2866 0.0574 17 6 -4.2392 -2.2676 0.1748 18 8 -4.8883 -3.2879 0.0724 19 7 -4.8617 -1.0911 0.3862 20 6 -4.0874 0.1258 0.6663 21 6 -4.5134 1.2157 -0.3290 22 6 -6.0301 1.4045 -0.2517 23 9 -6.4188 2.4203 -1.1317 24 9 -6.3898 1.7559 1.0538 25 6 -6.7287 0.0992 -0.6392 26 6 -6.3278 -1.0023 0.3470 27 7 -0.0357 -2.4317 -0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 3.0884 -3.6561 0.0001 30 1 1.8217 -5.7893 0.0004 31 1 -0.6588 -5.7074 0.0092 32 1 -2.6331 -4.3252 -0.0568 33 1 -4.2865 0.4592 1.6848 34 1 -3.0240 -0.0827 0.5491 35 1 -4.2349 0.9178 -1.3399 36 1 -4.0168 2.1525 -0.0762 37 1 -6.4295 -0.1884 -1.6471 38 1 -7.8090 0.2408 -0.6070 39 1 -6.7429 -1.9553 0.0191 40 1 -6.7059 -0.7614 1.3406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890247550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:17 Heat of formation + Delta-G solvation = -88.253363 kcal Electronic energy + Delta-G solvation = -30232.467235 eV Core-core repulsion = 25684.809887 eV Total energy + Delta-G solvation = -4547.657349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.08370 -47.07482 -40.66256 -38.89549 -37.44910 -37.10317 -34.47120 -33.22218 -32.10334 -31.50076 -30.46221 -29.32875 -26.29745 -25.57559 -24.15973 -23.52215 -21.89227 -21.33449 -20.42596 -19.44849 -18.13685 -17.53903 -17.14827 -16.89546 -16.43146 -16.38603 -16.01185 -15.48974 -14.98104 -14.78640 -14.66605 -14.55702 -13.96164 -13.86709 -13.70559 -13.48799 -13.38575 -13.00977 -12.97924 -12.77022 -12.67789 -12.42478 -12.12905 -12.08131 -11.64599 -11.50019 -11.24245 -11.08217 -10.96883 -10.77562 -10.59083 -10.51686 -10.06312 -9.90584 -9.17349 -8.96161 -8.69114 -8.11624 -7.39464 -7.16755 -6.31499 -4.52749 1.71321 2.50109 2.74210 3.00108 3.08340 3.11182 3.18469 3.56311 3.74518 3.75851 3.95843 3.98727 4.18603 4.24537 4.62860 4.71672 4.78590 4.92172 5.14816 5.24179 5.38434 5.47554 5.52074 5.64215 5.88529 5.92392 5.98747 6.06631 6.28899 6.38641 6.49666 6.71126 6.72251 7.08305 7.14019 7.34144 7.45028 7.68363 7.71661 7.93185 8.04414 8.28090 8.52419 8.81614 8.92157 10.04358 10.32388 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.004314 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.053207 B = 6489.350765 C = 8626.757926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.666 5.666 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.422 4.422 8 H 0.083 0.917 9 C 0.272 3.728 10 C -0.298 4.298 11 C -0.036 4.036 12 C -0.347 4.347 13 C 0.365 3.635 14 N -0.632 5.632 15 C 0.474 3.526 16 O -0.377 6.377 17 C 0.513 3.487 18 O -0.531 6.531 19 N -0.589 5.589 20 C 0.047 3.953 21 C -0.165 4.165 22 C 0.285 3.715 23 F -0.203 7.203 24 F -0.200 7.200 25 C -0.171 4.171 26 C 0.110 3.890 27 N -0.474 5.474 28 H 0.271 0.729 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.183 0.817 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 1.933 -0.094 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.285 5.285 2 C -0.166 4.166 3 Si 0.722 3.278 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.453 4.453 8 H 0.101 0.899 9 C 0.147 3.853 10 C -0.321 4.321 11 C -0.060 4.060 12 C -0.373 4.373 13 C 0.127 3.873 14 N -0.280 5.280 15 C 0.252 3.748 16 O -0.243 6.243 17 C 0.296 3.704 18 O -0.407 6.407 19 N -0.323 5.323 20 C -0.073 4.073 21 C -0.204 4.204 22 C 0.248 3.752 23 F -0.184 7.184 24 F -0.181 7.181 25 C -0.210 4.210 26 C -0.013 4.013 27 N -0.193 5.193 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.249 0.751 33 H 0.090 0.910 34 H 0.199 0.801 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.959 3.192 -0.132 12.379 hybrid contribution 0.186 -0.245 -0.015 0.308 sum -11.773 2.946 -0.147 12.137 Atomic orbital electron populations 1.70285 1.06022 1.27360 1.24882 1.26122 0.95131 1.00632 0.94736 0.86544 0.80284 0.81158 0.79777 1.19147 1.20283 1.19117 1.19565 0.94159 0.89296 1.42249 0.89863 1.18338 0.86902 0.92031 0.88017 1.21671 0.98746 0.93464 1.18232 1.20593 0.93056 0.96729 0.95624 1.20511 0.94848 0.94926 1.26966 1.18528 0.82464 0.91357 0.94919 1.43004 1.05468 1.08670 1.70840 1.20127 0.87234 0.85994 0.81488 1.90704 1.63943 1.29483 1.40126 1.20703 0.89725 0.83240 0.76725 1.90698 1.67617 1.33004 1.49399 1.47984 1.06407 1.09074 1.68862 1.23549 1.04512 0.81950 0.97308 1.22945 0.91023 1.02449 1.04000 1.21198 0.96301 0.85002 0.72660 1.93008 1.92754 1.63362 1.69304 1.92991 1.93405 1.93227 1.38448 1.22902 1.02332 0.93206 1.02540 1.21602 0.80481 0.99739 0.99448 1.68604 1.07330 1.23051 1.20286 0.91708 0.88319 0.88306 0.88675 0.75083 0.91037 0.80132 0.88214 0.88173 0.88244 0.88316 0.87628 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -16.36 8.98 55.55 0.50 -15.86 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 3 Si 0.90 17.86 29.56 -169.99 -5.02 12.83 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.42 -10.80 9.14 -37.73 -0.34 -11.15 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 9 C 0.27 7.14 6.55 -85.00 -0.56 6.58 16 10 C -0.30 -7.06 9.83 -38.65 -0.38 -7.44 16 11 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.35 -7.42 9.95 -38.88 -0.39 -7.81 16 13 C 0.36 8.40 7.43 -155.08 -1.15 7.25 16 14 N -0.63 -12.26 5.37 -11.83 -0.06 -12.32 16 15 C 0.47 9.03 7.73 -11.62 -0.09 8.94 16 16 O -0.38 -8.02 8.84 5.49 0.05 -7.97 16 17 C 0.51 8.35 7.74 -11.62 -0.09 8.26 16 18 O -0.53 -9.09 15.94 5.49 0.09 -9.00 16 19 N -0.59 -8.12 2.97 -173.03 -0.51 -8.63 16 20 C 0.05 0.65 6.09 -3.48 -0.02 0.63 16 21 C -0.17 -2.00 5.63 -26.39 -0.15 -2.15 16 22 C 0.28 3.30 2.10 -26.69 -0.06 3.24 16 23 F -0.20 -2.56 17.06 2.25 0.04 -2.53 16 24 F -0.20 -2.51 16.10 2.25 0.04 -2.47 16 25 C -0.17 -1.66 5.62 -26.62 -0.15 -1.81 16 26 C 0.11 1.21 6.20 -3.71 -0.02 1.18 16 27 N -0.47 -12.26 5.73 -10.28 -0.06 -12.32 16 28 H 0.27 6.10 8.29 -40.82 -0.34 5.76 16 29 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.41 6.85 8.18 -40.82 -0.33 6.51 16 33 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 34 H 0.18 3.05 3.78 -56.77 -0.21 2.84 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 1.15 7.05 -51.93 -0.37 0.78 16 40 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -28.77 339.27 -7.97 -36.75 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.24 Total: 10.47 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -3.89 Total: 5.95 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.14 Total: -49.14 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.14 Total: -16.97 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.07 Total: -5.00 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.02 Total: 12.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.77 -7.97 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890247550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.506 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds